View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14412_low_19 (Length: 232)

Name: NF14412_low_19
Description: NF14412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14412_low_19
NF14412_low_19
[»] chr5 (2 HSPs)
chr5 (22-151)||(14233254-14233383)
chr5 (167-232)||(14233432-14233497)
[»] chr4 (4 HSPs)
chr4 (41-137)||(26904480-26904576)
chr4 (41-138)||(5722281-5722378)
chr4 (170-232)||(26904642-26904704)
chr4 (183-232)||(9880603-9880652)
[»] chr2 (4 HSPs)
chr2 (30-151)||(38100042-38100161)
chr2 (26-138)||(301464-301576)
chr2 (26-140)||(3460933-3461047)
chr2 (176-217)||(3461094-3461135)
[»] chr7 (3 HSPs)
chr7 (26-140)||(35897781-35897895)
chr7 (167-224)||(30379953-30380010)
chr7 (44-138)||(30379798-30379891)
[»] scaffold0038 (1 HSPs)
scaffold0038 (26-133)||(48448-48555)
[»] chr6 (1 HSPs)
chr6 (26-133)||(28248286-28248393)
[»] chr3 (3 HSPs)
chr3 (22-139)||(1662911-1663028)
chr3 (167-224)||(34982650-34982707)
chr3 (41-138)||(18646051-18646148)
[»] chr1 (2 HSPs)
chr1 (26-135)||(50778933-50779042)
chr1 (26-138)||(44536827-44536939)
[»] chr8 (1 HSPs)
chr8 (42-110)||(37787536-37787604)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 14233254 - 14233383
Alignment:
Q  22 gtatattggtgaattgctagataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaa 121  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14233254 gtatattggtgaattgctagataaatttgagataaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaa 14233353  T
Q  122 gagaaagtggattcaacaaactttaaacaa 151  Q
    ||||||||||||||||||||||||| ||||    
T  14233354 gagaaagtggattcaacaaactttagacaa 14233383  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 14233432 - 14233497
Alignment:
Q  167 tattcagttagtgtaattagaaaatttatgcatgatccaaggaaatctcattttatagttgctaag 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14233432 tattcagttagtgtaattagaaaatttatgcatgatccaaggaaatctcattttatagttgctaag 14233497  T

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Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 26904480 - 26904576
Alignment:
Q  41 gataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaagagaaagtggattcaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| |||||||||||||||||| |||||||    
T  26904480 gataaatttgagatgaaaagctgcaattcagtctcaaatccatcagaaacatacccaaagctagatgagtgcagtgaagaagagaaagttgattcaa 26904576  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 5722378 - 5722281
Alignment:
Q  41 gataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaagagaaagtggattcaac 138  Q
    ||||||||||| ||||| |  ||||||||||| | |||||||||| |||| ||||||||||||||||||| ||   ||||||| ||||| ||||||||    
T  5722378 gataaatttgaaatgaagaattgcaattcagttttaaatccatcagaaactaactcaaagctagatgagtgcaacaaagaagaaaaagtagattcaac 5722281  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 26904642 - 26904704
Alignment:
Q  170 tcagttagtgtaattagaaaatttatgcatgatccaaggaaatctcattttatagttgctaag 232  Q
    ||||||||||| ||||| ||||| ||||||||||| |||||| ||||| | ||||||||||||    
T  26904642 tcagttagtgtgattagcaaattcatgcatgatcctaggaaacctcatgtgatagttgctaag 26904704  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 9880603 - 9880652
Alignment:
Q  183 ttagaaaatttatgcatgatccaaggaaatctcattttatagttgctaag 232  Q
    |||| |||||||||||||||||| ||||||||||||| |||| |||||||    
T  9880603 ttagcaaatttatgcatgatccatggaaatctcatttgatagctgctaag 9880652  T

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Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 38100161 - 38100042
Alignment:
Q  30 gtgaattgctagataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaagagaaagt 129  Q
    ||||||| || |||||| ||||||||||||| |||||||||||||||||||||||| |||||||||  ||| ||||||||| |||||||||||||||| |    
T  38100161 gtgaattactggataaaattgagatgaaaagttgcaattcagtctcaaatccatcagaaacaaact--aagttagatgagtgcagtgaagaagagaaatt 38100064  T
Q  130 ggattcaacaaactttaaacaa 151  Q
    ||||||||| | ||| ||||||    
T  38100063 ggattcaactagcttcaaacaa 38100042  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 301464 - 301576
Alignment:
Q  26 attggtgaattgctagataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaagaga 125  Q
    |||||||||||| | ||||||||||| ||||| |  ||||||||||| |||||||||||| |||| ||||||||||||||||||| |||  ||||||| |    
T  301464 attggtgaattgttggataaatttgaaatgaagaattgcaattcagtttcaaatccatcagaaactaactcaaagctagatgagtgcagcaaagaagaaa 301563  T
Q  126 aagtggattcaac 138  Q
    |||| | ||||||    
T  301564 aagtagcttcaac 301576  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 3460933 - 3461047
Alignment:
Q  26 attggtgaattgctagataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaagaga 125  Q
    |||||||||||||| ||||||||||| ||||| || |||||| |||| |||||||  ||| | |||||||||||| | |||||||  | ||||||||| |    
T  3460933 attggtgaattgcttgataaatttgaaatgaagagttgcaatacagtttcaaatctttcagagacaaactcaaagttggatgagtgtattgaagaagaaa 3461032  T
Q  126 aagtggattcaacaa 140  Q
    |||||||||| ||||    
T  3461033 aagtggattccacaa 3461047  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 3461094 - 3461135
Alignment:
Q  176 agtgtaattagaaaatttatgcatgatccaaggaaatctcat 217  Q
    ||||||||||| || || ||||||||||||||||||||||||    
T  3461094 agtgtaattagcaagttcatgcatgatccaaggaaatctcat 3461135  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 35897781 - 35897895
Alignment:
Q  26 attggtgaattgctagataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaagaga 125  Q
    |||||||||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||| | |||||||||||||| |||||||  | ||||||||| |    
T  35897781 attggtgaattgcttgataaatttgaaatgaagagctgcaatacagtttcaaatccatcagagacaaactcaaagctggatgagtgtattgaagaagaaa 35897880  T
Q  126 aagtggattcaacaa 140  Q
    |||||||||| ||||    
T  35897881 aagtggattccacaa 35897895  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 30379953 - 30380010
Alignment:
Q  167 tattcagttagtgtaattagaaaatttatgcatgatccaaggaaatctcattttatag 224  Q
    ||||||||||||||||| || || |||||||||||||||| |||||||||||| ||||    
T  30379953 tattcagttagtgtaataagcaagtttatgcatgatccaaagaaatctcatttgatag 30380010  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 30379798 - 30379891
Alignment:
Q  44 aaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaagagaaagtggattcaac 138  Q
    |||||||| ||||||   ||||||||| |||| ||||||||| |||||||||| ||||| | ||| | |||||||||||| |||||||| |||||    
T  30379798 aaatttgaaatgaaagattgcaattcaatctctaatccatcagaaacaaactcgaagcttgttgaatgcagtgaagaaga-aaagtggaatcaac 30379891  T

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Target: scaffold0038 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 48448 - 48555
Alignment:
Q  26 attggtgaattgctagataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaagaga 125  Q
    |||||||||||||| ||||||||||| ||||| ||||||||| |||| |||||||| ||| | ||||||||||| || ||||||| || ||||||||| |    
T  48448 attggtgaattgcttgataaatttgaaatgaagagctgcaatacagtttcaaatccttcagagacaaactcaaatctggatgagtgcattgaagaagaaa 48547  T
Q  126 aagtggat 133  Q
    ||||||||    
T  48548 aagtggat 48555  T

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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 28248286 - 28248393
Alignment:
Q  26 attggtgaattgctagataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaagaga 125  Q
    |||||||||||||| ||||||||||| ||||| ||||||||| |||| |||||||| ||| | ||||||||||| || ||||||| || ||||||||| |    
T  28248286 attggtgaattgcttgataaatttgaaatgaagagctgcaatacagtttcaaatccttcagagacaaactcaaatctggatgagtgcattgaagaagaaa 28248385  T
Q  126 aagtggat 133  Q
    ||||||||    
T  28248386 aagtggat 28248393  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 1662911 - 1663028
Alignment:
Q  22 gtatattggtgaattgctagataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaa 121  Q
    ||||||||||||||||||||| |||||| | ||| |||| || |||||| |||||||||||||| | || |||| |||| ||||||| | || |||| ||    
T  1662911 gtatattggtgaattgctagagaaatttaatatggaaagttgtaattcaatctcaaatccatcagagactaactaaaagttagatgaatgcaatgaataa 1663010  T
Q  122 gagaaagtggattcaaca 139  Q
    ||||||||||||||||||    
T  1663011 gagaaagtggattcaaca 1663028  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 34982650 - 34982707
Alignment:
Q  167 tattcagttagtgtaattagaaaatttatgcatgatccaaggaaatctcattttatag 224  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  34982650 tattcagttagtgtaattagcaagtttatgcatgatccaaggaaatctcatttgatag 34982707  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 18646148 - 18646051
Alignment:
Q  41 gataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaagagaaagtggattcaac 138  Q
    ||||||||||| ||||| |  ||||||||||| | |||||||||| |||| ||||||||||||||||||| ||   ||||||| ||||| ||||||||    
T  18646148 gataaatttgaaatgaagaattgcaattcagttttaaatccatcagaaactaactcaaagctagatgagtgcaacaaagaagaaaaagtagattcaac 18646051  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 50779042 - 50778933
Alignment:
Q  26 attggtgaattgctagataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaagaga 125  Q
    |||||||||||||| || |||||||| ||||| ||||||||| |||| |||||||||||| | |||||||||||| | ||||||| || ||| ||||| |    
T  50779042 attggtgaattgcttgaaaaatttgaaatgaagagctgcaatacagtttcaaatccatcagagacaaactcaaagttggatgagtgcactgatgaagaaa 50778943  T
Q  126 aagtggattc 135  Q
    ||||||||||    
T  50778942 aagtggattc 50778933  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 44536939 - 44536827
Alignment:
Q  26 attggtgaattgctagataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagtacagtgaagaagaga 125  Q
    |||||||| ||| | || |||||||| ||||| |  ||||||| ||| |||||||||||| |||| |||||||| |||||||||| |||  || |||| |    
T  44536939 attggtgagttgttggagaaatttgaaatgaagaattgcaattaagtttcaaatccatcagaaactaactcaaatctagatgagtgcagcaaacaagaaa 44536840  T
Q  126 aagtggattcaac 138  Q
    |||| ||||||||    
T  44536839 aagtagattcaac 44536827  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 37787604 - 37787536
Alignment:
Q  42 ataaatttgagatgaaaagctgcaattcagtctcaaatccatcataaacaaactcaaagctagatgagt 110  Q
    |||||||||| ||||| |  ||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  37787604 ataaatttgaaatgaagaattgcaattcagtttcaaatccatcataaactaactcaaagctagctgagt 37787536  T

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