View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14412_low_4 (Length: 419)
Name: NF14412_low_4
Description: NF14412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14412_low_4 |
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| [»] scaffold0077 (2 HSPs) |
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Alignment Details
Target: scaffold0077 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 53474 - 53694
Alignment:
| Q |
1 |
gactcagcaaaaccgaaagaaatcacagtaaagatcaatggcggccacttctgaacaatctccctctaaaatcttagaaacaacaatcaatgctcacgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
53474 |
gactcagcaaaaccgaaagaaatcacagtaaagatcaatggcggccacttctgaactatctccctctaaaatcttagaaacaacaatcaacgctcacgat |
53573 |
T |
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| Q |
101 |
tccacttcagaatcacatccaacacctccaaaaccccaccaaatcaacgaaccaatcaacggcgtcgcaaccatcgagaaatggaagagagacgacggtg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
53574 |
tccacttcagaatcacatccaacgcctccaaaaccccaccaaatcaacaaaccaatcaacggcgtcgcaaccatcgagaaacggaagagagacgacggcg |
53673 |
T |
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| Q |
201 |
acgacaacgccgatgtcgaac |
221 |
Q |
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||| ||||||||||||||||| |
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| T |
53674 |
acggcaacgccgatgtcgaac |
53694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 53847 - 53940
Alignment:
| Q |
307 |
ggaaaggggttttgtttatgctactgttgtttgtgtcgtttttaacaaggagaaacaattgttggtttttaatttaatttttctagggttgttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53847 |
ggaaaggggttttgtttatgctactgttgtttgtgttgtttttaacgaggagaaacaattgttggtttttaatttaatttttctagggttgttt |
53940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 21946783 - 21946606
Alignment:
| Q |
36 |
caatggcggccacttctgaacaatctccctctaaaatcttagaaacaacaatcaatgctcacgattccacttcagaatcacatccaacacctccaaaacc |
135 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||| || ||| | |||||||| ||||||||| | |
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| T |
21946783 |
caatggcggccacttccgaactatctccctctaaaatcttagaaacaccaatcaatgctcacgattccacctccgaacctcatccaacgcctccaaaatc |
21946684 |
T |
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| Q |
136 |
ccaccaaatcaacgaaccaatcaacggcgtcgcaaccatcgagaaatggaagagagacgacggtgacgacaacgccga |
213 |
Q |
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|| ||||||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||| |||| ||||||||| |
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| T |
21946683 |
cccccaaatcaacgaaccaatcaacgacgtcgtaaccaccgagaaacggaagagagacgacggcgacggcaacgccga |
21946606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 40793651 - 40793752
Alignment:
| Q |
1 |
gactcagcaaaaccgaaagaaatcacagtaaagatcaatggcggccacttctgaacaatctccctctaaaatcttagaaacaacaatcaatgctcacgat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40793651 |
gactcagcaaaaccgaaagaaatcacagtaaagatcaatggcgacca-----------tctccctctaaaatcttagaaacaacaatcaacgctcacgat |
40793739 |
T |
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| Q |
101 |
tccacttcagaat |
113 |
Q |
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||||||||||||| |
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| T |
40793740 |
tccacttcagaat |
40793752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39604694 - 39604484
Alignment:
| Q |
1 |
gactcagcaaaaccgaaagaaatcacagtaaagatcaatggcggccacttctgaacaatctccctctaaaatcttagaaacaacaatcaatgctcacgat |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | |||| || |
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| T |
39604694 |
gactcagcaaaaccgaaataaatcacagtaaagatcaatggcggccacttctgaactatctccctct--------------aacaatcaacgttcactat |
39604609 |
T |
|
| Q |
101 |
tccacttcagaatcacatccaacacctccaaaaccccaccaaatcaacgaacc----aatcaacggcgtcgcaaccatcgagaaatggaagagagacgac |
196 |
Q |
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||||| ||||||||||||||||| ||||||| |||| || | | || |||||||||||||||||| ||| ||||| |||||||||||||| |
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| T |
39604608 |
tccacatcagaatcacatccaacgcctccaacccccccccccccccccccccccccaaatcaacggcgtcgcaacaatcaagaaacggaagagagacgac |
39604509 |
T |
|
| Q |
197 |
ggtgacgacaacgccgatgtcgaac |
221 |
Q |
| |
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|| |||||||||| ||||||||||| |
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| T |
39604508 |
ggcgacgacaacgtcgatgtcgaac |
39604484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 388
Target Start/End: Original strand, 30858845 - 30858923
Alignment:
| Q |
314 |
ggttttgtttatgctactgttgtttgtgtcgttttta---acaaggagaaacaatt-gttggtttttaatttaattttt |
388 |
Q |
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|||||| ||||||||||||||||| ||| ||||||| | |||||||||||||| |||||||||||||||||||||| |
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| T |
30858845 |
ggttttctttatgctactgttgttgttgttgtttttactgagaaggagaaacaatttgttggtttttaatttaattttt |
30858923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 400
Target Start/End: Complemental strand, 39604304 - 39604223
Alignment:
| Q |
307 |
ggaaaggggttttgtttatgctactgttgtttgtgtcgtttttaacaaggagaaacaa-ttgttggtttttaatttaatttttctagggttgttt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||| |
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| T |
39604304 |
ggaaaggggttttgtttatgctactgttgtttgt-------------aggagaaacaatttgttggtttttaatttaatttttttggggttgttt |
39604223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 32694943 - 32695040
Alignment:
| Q |
307 |
ggaaaggggttttgtttatgctactgttgtttgtgtcgttttta---acaaggagaaacaatt-gttggtttttaatttaatttttctagggttgttt |
400 |
Q |
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|||||| |||||| ||||||||||||||||| ||| |||| || | |||||||||||||| |||||||||||||||||||||||| || |||||| |
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| T |
32694943 |
ggaaagtggttttctttatgctactgttgttgttgttgtttgtactgagaaggagaaacaatttgttggtttttaatttaatttttctgggattgttt |
32695040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 35371630 - 35371577
Alignment:
| Q |
167 |
gcaaccatcgagaaatggaagagagacgacggtgacgacaacgccgatgtcgaa |
220 |
Q |
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||||||| |||||| ||||||||||||||| ||| | |||||||||||||||| |
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| T |
35371630 |
gcaaccactgagaaacggaagagagacgacgatgaaggcaacgccgatgtcgaa |
35371577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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