View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14412_low_7 (Length: 392)
Name: NF14412_low_7
Description: NF14412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14412_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 44907177 - 44907556
Alignment:
| Q |
13 |
aaaaccatcattagaaagcctagatagctcctttagatctaccctagatgcatatgatgaagcttccttcattgagatggatccaagaatgccaccttct |
112 |
Q |
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| T |
44907177 |
aaaaccatcattagaaagcctagatagctcctttagatctaccctagatgcatatgatgaaacttccttcattgagatggatccaagaatgccaccttct |
44907276 |
T |
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| Q |
113 |
aaaagattcttcatgaattcacatgattccaacaaatttgattttccaacctcacaatcccctcttactcttgttcatgcagatgaactcttttctgatg |
212 |
Q |
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| T |
44907277 |
aaaagattcttcatgaattcacatgattccaacaaatttgattttccaacctcacaatcccctcttactcttgttcatgcagatgaactcttttctgatg |
44907376 |
T |
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| Q |
213 |
gttaccttatgccnnnnnnngttgaatctttgaaaatggaagaatatgaagcattagactccaataatacaagtcctaattcatcttcacatgcaccaaa |
312 |
Q |
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| T |
44907377 |
gttaccttatgccttttgttgttgaatctttgaaaatggaagaatatgaagcattagactccaataatacaagtcctaattcatcttcacatgcaccaaa |
44907476 |
T |
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| Q |
313 |
aggtgttgttcctagatgccattccttaaaaagatgcagaacattatcaagaagaatatttttgaagtatttaaatttct |
392 |
Q |
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| T |
44907477 |
aggtgttgttcctagatgccattccttaaaaagatgcagaacattatcaagaagaatatttttgaagtatttaaatttct |
44907556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 11423461 - 11423260
Alignment:
| Q |
24 |
tagaaagcctagatagctcctttagatctaccctagatgcatatgatgaagcttcct---tcattgagatggatccaagaatgccaccttctaaaagatt |
120 |
Q |
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| T |
11423461 |
tagaaagccttgatgactcctttagaacttctcttgatgcttatgatgaagcttcttctttcattgaaatgaatccaaaaatgccaccttctaaaagatt |
11423362 |
T |
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| Q |
121 |
cttcatgaattcacatgattccaacaaatttgattttccaacctcacaatcccctcttactcttgttcatgcagatgaactcttttctgatggttacctt |
220 |
Q |
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||| || || ||||| |||| |||||| |||||||||||||||| || |||| | ||||||| ||||||| |||||||||| |||||||| || |
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| T |
11423361 |
ctttataaactcacaagatt---ttaaatttcattttccaacctcacattcttctctcaatcttgttgatgcagaccaactcttttccaatggttacttt |
11423265 |
T |
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| Q |
221 |
atgcc |
225 |
Q |
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||||| |
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| T |
11423264 |
atgcc |
11423260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 217
Target Start/End: Complemental strand, 11430582 - 11430437
Alignment:
| Q |
75 |
cttccttcattgagatggatccaagaatgccaccttctaaaagattcttcatgaattcacatgattccaacaaatttgattttccaacctcacaa---tc |
171 |
Q |
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| T |
11430582 |
cttccttcattgaaatggatccaagaatgccaccttctagaagatttttcataaactcacaagatt---taaaatttgattttccaacttcacaacattc |
11430486 |
T |
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| Q |
172 |
ccctct---tactcttgttcatgcagatgaactcttttctgatggttac |
217 |
Q |
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||| || ||||||||| |||||||| |||||||||| |||||||| |
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| T |
11430485 |
ccccctcacaactcttgttgatgcagatcaactcttttcaaatggttac |
11430437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 217
Target Start/End: Complemental strand, 11437929 - 11437784
Alignment:
| Q |
75 |
cttccttcattgagatggatccaagaatgccaccttctaaaagattcttcatgaattcacatgattccaacaaatttgattttccaacctcac---aatc |
171 |
Q |
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||||||||||||| |||||||||||||||||| |||| | ||||||||| || || ||||| |||| |||||||||||||||||||| || |||| |
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| T |
11437929 |
cttccttcattgaaatggatccaagaatgccatcttcaagaagattctttataaactcacaagatt---tcaaatttgattttccaaccttacaagaatc |
11437833 |
T |
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| Q |
172 |
ccctct---tactcttgttcatgcagatgaactcttttctgatggttac |
217 |
Q |
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|||||| ||||||||| |||||||| |||||||||| |||||||| |
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| T |
11437832 |
ccctctcaccactcttgttgatgcagatcaactcttttccaatggttac |
11437784 |
T |
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