View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14412_low_9 (Length: 352)
Name: NF14412_low_9
Description: NF14412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14412_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 41 - 342
Target Start/End: Original strand, 33723233 - 33723534
Alignment:
| Q |
41 |
agggtagaggaatttaaggttaaaaatcaaattgatgatgtagtgttatgggaaggagatataagttgctagtgtaaagggataatggggattttaattg |
140 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33723233 |
agggtagaggaatttgaggttaaaaatcaaattgatgatgtagtgttatgggaaggagatataagttgctagtgtaaagggataatggggattttaattg |
33723332 |
T |
|
| Q |
141 |
cttgcggtttaagtttaatttgcgggtatggttagagcaaaaggaaaagtagttgtagagaagactgaagatgcattgttagtgtaaaatagttttatac |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33723333 |
cttgcggtttaagtttaatttgcgggtatggttagagcgaaaggaaaagtagttgtagagaagactgaagatgcattgttagtgtaaaatagttttatac |
33723432 |
T |
|
| Q |
241 |
tgactgacatccattgaacatcttttagtctgtcaaatcacataatattttgaaagagtttaatttatatacacggtcagtgtacaaaagttttaattga |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33723433 |
tgactgacatccattgaacatcttttagtctgtcaaatcacataatattttgaaagagtttaatttatatacatcgtcagtgtacaaaagttttaattga |
33723532 |
T |
|
| Q |
341 |
tg |
342 |
Q |
| |
|
|| |
|
|
| T |
33723533 |
tg |
33723534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 29448059 - 29448099
Alignment:
| Q |
295 |
agagtttaatttatatacacggtcagtgtacaaaagtttta |
335 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
29448059 |
agagtttaatttatatacagggtcagtgtataaaagtttta |
29448099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 1018649 - 1018611
Alignment:
| Q |
297 |
agtttaatttatatacacggtcagtgtacaaaagtttta |
335 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
1018649 |
agtttaatttatatacactgtcagtgtacaaatgtttta |
1018611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 9477572 - 9477613
Alignment:
| Q |
294 |
aagagtttaatttatatacacggtcagtgtacaaaagtttta |
335 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
9477572 |
aagagtttaatttatatacattgtcaatgtacaaaagtttta |
9477613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University