View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14413_high_14 (Length: 287)
Name: NF14413_high_14
Description: NF14413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14413_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 4 - 273
Target Start/End: Original strand, 52711025 - 52711294
Alignment:
| Q |
4 |
ttactatcattccattttatttcatccaatgatccttatgctatgaattaccatttcttaccagctgattcacttcaaaaagtagttatacttggtgctc |
103 |
Q |
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| T |
52711025 |
ttactatcattccattttatttcatccaatgatccttatgctatgaattaccatttcttagcagccgattcacttcaaaaagtagttatccttggtgctc |
52711124 |
T |
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| Q |
104 |
tttttatatggaacacattcttaaaaaaccaagatagtcttgattggaccattacacttttctccatttcaactcttcctaacacacttatcatgggaat |
203 |
Q |
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| T |
52711125 |
tttttatatggaacacattctcaaaaaaccaagatagtcttgattggaccattacacttttctccatttcaactcttcctaacacacttatcatgggaat |
52711224 |
T |
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| Q |
204 |
ccctcttttaaaagccatgtatggtgatttctcaggaaatcttatggtacaaattgttgttctgcaaagt |
273 |
Q |
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| T |
52711225 |
ccctcttttaaaagccatgtatggtgatttctcaggaaatcttatggtacaaattgttgttctgcaaagt |
52711294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 52716330 - 52716602
Alignment:
| Q |
1 |
ccattactatcattccattttatttcatccaatgatccttatgctatgaattaccatttcttaccagctgattcacttcaaaaagtagttatacttggtg |
100 |
Q |
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| T |
52716330 |
ccattactatctttccattttatatcttccaatgatccttatgctatgaattaccatttcttagcagctgattcacttcaaaaagtagttatccttggtg |
52716429 |
T |
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| Q |
101 |
ctctttttatatggaacacattcttaaaaaaccaagatagtcttgattggaccattacacttttctccatttcaactcttcctaacacacttatcatggg |
200 |
Q |
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| T |
52716430 |
ctctttttatatggaacacattctcaaaaaaccaagatagtcttgattggactattacacttttctccctttcaactcttcctaacacacttgttatggg |
52716529 |
T |
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| Q |
201 |
aatccctcttttaaaagccatgtatggtgatttctcaggaaatcttatggtacaaattgttgttctgcaaagt |
273 |
Q |
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| T |
52716530 |
aatccctcttttaagagctatgtatggtgatttctcaggaaatcttatggtacaaattgttgttcttcaaagt |
52716602 |
T |
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