View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14413_low_10 (Length: 435)
Name: NF14413_low_10
Description: NF14413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14413_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 139 - 392
Target Start/End: Original strand, 31901017 - 31901274
Alignment:
| Q |
139 |
ctaacagaacatgcatcatcttaaattcaactaagatttgccatataggatgcattagtgttcatgatttatccttattcttctctactaataaaatcaa |
238 |
Q |
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| T |
31901017 |
ctaacagaacatgcatcatcttaaattcaactaagatttgccatataggatgcattagtgttgatgatttatcctgattattctctactaacataatcaa |
31901116 |
T |
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| Q |
239 |
attgtgtatgttattagtatttacat-gaaaacatttaatggccataaagc---nnnnnnnnaacaaccaaaagttattgagataacacaaaactggctg |
334 |
Q |
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| T |
31901117 |
actatgtatgttattagtatttacatagaaaacatttaatggccacaaagctttttttttttaacaaccaaaagttattgagataacacagatctggctg |
31901216 |
T |
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| Q |
335 |
tcaaaacaaaacagcagcaccacatcataatatttgtgttcaagacaacaaaataaca |
392 |
Q |
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| T |
31901217 |
tcaaaacataacagcagcaccacatcataatagttgtgttcaagacaacaaaataaca |
31901274 |
T |
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Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 19919711 - 19919798
Alignment:
| Q |
26 |
attcaacacataaaaaacatacaattttaagtgtaaatattaaaattgagggggttcacgtgcacgccctcagcgcaacgttgctccg |
113 |
Q |
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| T |
19919711 |
attcaacgcataaaaaacatacaattttaagtgtaaatattaaaattgaaggggttcacgtgcacaccctcaatgcaacgtggctccg |
19919798 |
T |
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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 287
Target Start/End: Original strand, 8398862 - 8399026
Alignment:
| Q |
124 |
taacataagttataactaacagaacatgcatcatcttaaattcaactaagatttgccatataggatgcattagtgttcatgatttatccttattcttctc |
223 |
Q |
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||||||||||||||| || || |||||| ||||||||||||||||||||||| | || || |||||| ||||| |||||||| ||||||||||||| |
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| T |
8398862 |
taacataagttataaggaagaggccatgcaacatcttaaattcaactaagattttcaatggagaatgcatctgtgttaatgatttacccttattcttctc |
8398961 |
T |
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| Q |
224 |
tactaataaaatcaaattgtgtatgttattagtatttacat-gaaaacatttaatggccataaag |
287 |
Q |
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| T |
8398962 |
taccaaaagaatcaaatgaagcatgttattagtatttgcatggaaaacaattaatggccacaaag |
8399026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 29221132 - 29221050
Alignment:
| Q |
15 |
atattgagggaattcaacacataaaaaacatacaa-ttttaagtgtaaatattaaaattgagggggttcacgtgcacgccctca |
97 |
Q |
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| T |
29221132 |
atattgaggggattcaacacataaaacacataaaaattttaagtgtaaatattaaaattga-ggggttcacgtgcacaccctca |
29221050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 37036335 - 37036415
Alignment:
| Q |
15 |
atattgagggaattcaacacataaaaaacatacaattttaagtgtaaatattaaaattgagggggttcacgtgcacgccctca |
97 |
Q |
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||||| |||| |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| ||||| |||||| |
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| T |
37036335 |
atattaaggggattcaacacataaaaa-catataattttaagtgtaaatattaaaattga-ggggttcacatgcacaccctca |
37036415 |
T |
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