View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14413_low_11 (Length: 423)
Name: NF14413_low_11
Description: NF14413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14413_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 2708784 - 2708531
Alignment:
| Q |
18 |
gttggttactttgcagaaaatcaaatgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatctt |
117 |
Q |
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| T |
2708784 |
gttggttactttgcagaaaatcaaatgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatctc |
2708685 |
T |
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| Q |
118 |
gccgttcaagatatgcctcctatgaggttgggtttgtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggtatatattctgttgattg |
217 |
Q |
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| T |
2708684 |
gccgttcaagatatgcctccgatgaggttgggtttgtctggtagcctatcaatatacaagttgaagcatagtgcagacaaggtatatattctgttgattg |
2708585 |
T |
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| Q |
218 |
tgtgaacagacaatagttaatgtttagcactaatgcaaatgtttgtatattgtt |
271 |
Q |
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| T |
2708584 |
tgtgaacagacaatagttaatgttaagcactaatgcaaatgtttgtatattgtt |
2708531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 2702835 - 2702663
Alignment:
| Q |
28 |
ttgcagaaaatcaaatgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatcttgccgttcaag |
127 |
Q |
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| T |
2702835 |
ttgcagaaaatcgactgtgttcacagcaatgctgttatggagataatgcgaggtattcgatatcagttgacggaactcataactggcctcgctgttcaag |
2702736 |
T |
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| Q |
128 |
atatgcctcctatgaggttgggtttgtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggt |
200 |
Q |
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| T |
2702735 |
acatggctccgatgagcttgggtttgtctcatagcctatcaagatacaagttgaagttcagtgcagacaaggt |
2702663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 26713695 - 26713866
Alignment:
| Q |
31 |
cagaaaatcaaatgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatcttgccgttcaagata |
130 |
Q |
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||||||||| ||||| |||||||||| |||||||||||| | ||| ||||| | ||||||| |||| ||||| || | | ||| || |||||||| | |
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| T |
26713695 |
cagaaaatcgaatgtgttcacaacaatgctgttatggagttgatgagaggtgtcagatatcaattgaatgaactcatagcaggtctagctgttcaagaca |
26713794 |
T |
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| Q |
131 |
tgcctcctatgaggttgggtttgtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggtat |
202 |
Q |
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| T |
26713795 |
tggcccctatgagcttgggtttgtctcatagcttatccagatacaggctgaagtttagcgccgacaaggtat |
26713866 |
T |
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