View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14413_low_12 (Length: 423)
Name: NF14413_low_12
Description: NF14413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14413_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 8455648 - 8455976
Alignment:
| Q |
14 |
aatatttaaagtacctgttagcatttttcttaaatttaaaggaaagacagtgaaaaatgttttttacaaatctttcccttattgtgggagtggttatttt |
113 |
Q |
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| T |
8455648 |
aatatttaaagtacttgttagtatttttcttaaatttaaaggaaagacagtgaaaaatgttttttacaaatctttcccttattgtgggagtggttatttt |
8455747 |
T |
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| Q |
114 |
gaagcatacatgactcttttttatgttacctgttgatctaatttaattgagtgaaatttnnnnnnnnnnntattaaagagtgttctagagaattggtcat |
213 |
Q |
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| T |
8455748 |
gaagcatgcatgactcttttttatgttacttgttgatctaatttaattgagtgaaattt--aaaaaaaaatattaaagagtgttctagagaattggt--- |
8455842 |
T |
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| Q |
214 |
ttgaataaaagaagccaggtgtaatttgaaaatagacacgatttgaaaagagacaaaaatgagaagtaactatagggcgcttactattgaagctttgcaa |
313 |
Q |
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| T |
8455843 |
------------agccaggtgtaatttgaaaatagacacgatttgaaaagagacaaaaatgagaagtaactatcgggcgcttactattgaagctttgcaa |
8455930 |
T |
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| Q |
314 |
ttctaagctaac---agaagaagaagagaatatgaatcaaatgcct |
356 |
Q |
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| T |
8455931 |
ttctaagctaacagaagaagaagaagagaatatgaatcaaatgcct |
8455976 |
T |
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