View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14413_low_13 (Length: 394)
Name: NF14413_low_13
Description: NF14413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14413_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 44843526 - 44843168
Alignment:
| Q |
17 |
attctcacatgagtatcgactattgagagttatgtgtctcgttggcaatttagttgggaataacaatatgcagctctatctttaagaattcggtatagtc |
116 |
Q |
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| T |
44843526 |
attctcacatgagtattgactattgagagttatgtgtgtcgttggcaatttagttgggagtaacaatatgcagctctatctttaagaattcggtatagtc |
44843427 |
T |
|
| Q |
117 |
ttcgagagattttagcgctttgagttcaatataaatgctttatctctaagtctaaccctataaccattaaccacactctctctaaccctaagccctaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44843426 |
ttcgagagattttagcgctttgagttcaatataaatgctttatctctaagtctaaccctataaccattaaccacactctctctaaccctaagccct-aat |
44843328 |
T |
|
| Q |
217 |
acctctgctcccctctgcgtggaattcaaccaatggcttgtagctaccaccacgataatgaagttgacctgaagaacttctccccaaaacttcgacaaca |
316 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44843327 |
acctctgctcccctctgcgtggaattcaatcaatggcttgtagctaccaccacgataatgaagctgacctgaagaacttctccccaaaacttcgacaaca |
44843228 |
T |
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| Q |
317 |
aatgcacgattacagaataaacatgctagctttcactgctgaaaaggctgagactatcgc |
376 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44843227 |
aatgcatgattacagaataaacatgctagctttcactgctgaaaaggctgagactatcgc |
44843168 |
T |
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