View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14413_low_16 (Length: 331)

Name: NF14413_low_16
Description: NF14413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14413_low_16
NF14413_low_16
[»] chr4 (3 HSPs)
chr4 (20-314)||(52710745-52711039)
chr4 (116-314)||(52716149-52716347)
chr4 (204-298)||(33101954-33102048)
[»] chr1 (1 HSPs)
chr1 (193-289)||(10839043-10839139)
[»] chr7 (1 HSPs)
chr7 (230-313)||(34970772-34970855)
[»] chr2 (1 HSPs)
chr2 (230-280)||(16761382-16761432)
[»] chr6 (1 HSPs)
chr6 (186-314)||(25038561-25038689)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 52710745 - 52711039
Alignment:
Q  20 gaacgtttacaatgcgcggcgttagccttataatcaatcaattatattcaatattcatacgcagatatttacgaactctcatataatttccgtgtctcta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  52710745 gaacgtttacaatgcgcggcgttagccttataatcaatcaattatattcaatatttatacgcagatatttacgaactctcatataatttccgtgtctcta 52710844  T
Q  120 acctaccttgacatatctataaccatgattaccggcaaggacatttacaatgttttagcggcgattgtgccactatatgtcgctatgatattagcatatg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52710845 acctaccttgacatatctataaccatgattaccggcaaggacatatacaatgttttagcggcgattgtgccactatatgtcgctatgatattagcatatg 52710944  T
Q  220 gttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcggtttttgcagttccattactatcattccat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52710945 gttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcggtttttgcagttccgttactatcattccat 52711039  T

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Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 116 - 314
Target Start/End: Original strand, 52716149 - 52716347
Alignment:
Q  116 tctaacctaccttgacatatctataaccatgattaccggcaaggacatttacaatgttttagcggcgattgtgccactatatgtcgctatgatattagca 215  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||| || ||| ||||||| || || |||||||| |||||||| |||||||||||||||    
T  52716149 tctaatctaccttgacctatctataaccatgattaccggtaaggatatatacgatgttttcgcagcaattgtgccgctatatgttgctatgatattagca 52716248  T
Q  216 tatggttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcggtttttgcagttccattactatcattccat 314  Q
    || ||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| ||||||    
T  52716249 tacggttcagttcgttggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgcagttccattactatctttccat 52716347  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 298
Target Start/End: Original strand, 33101954 - 33102048
Alignment:
Q  204 atgatattagcatatggttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcggtttttgcagttcc 298  Q
    ||||| ||||| ||||| || || || ||||||||||| ||| |||| || |||||||| || ||||||||||| ||| || |||| ||||||||    
T  33101954 atgatcttagcctatggctccgtacggtggtggaaaatattctcaccggaccaatgttccggcataaaccgtttcgtcgcgattttcgcagttcc 33102048  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 193 - 289
Target Start/End: Complemental strand, 10839139 - 10839043
Alignment:
Q  193 tatatgtcgctatgatattagcatatggttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcggtttt 289  Q
    ||||||| |||||||| ||||| || ||||||||||| |||||||| || ||| |||| ||||||||||| || ||||||||||||||| |||||||    
T  10839139 tatatgttgctatgatcttagcctacggttcggtccgttggtggaagattttctcaccggatcaatgttccggtataaaccgttttgtcgcggtttt 10839043  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 34970772 - 34970855
Alignment:
Q  230 atggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcggtttttgcagttccattactatcattcca 313  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||  |  |||||||||||||| | || ||||||||    
T  34970772 atggtggaaaatcttcacaccagatcaatgttcaggcataaaccgttttgtagcactttttgcagttccacttctctcattcca 34970855  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 16761432 - 16761382
Alignment:
Q  230 atggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgt 280  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||||||||||    
T  16761432 atggtggaaaatctttacaccagatcaatgtgctggtataaaccgttttgt 16761382  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 314
Target Start/End: Original strand, 25038561 - 25038689
Alignment:
Q  186 gtgccactatatgtcgctatgatattagcatatggttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcgg 285  Q
    |||||||| ||||| |||||||| ||||| ||||| || ||   |||||||||||| ||  |||| ||||||||||| ||||| |||||||||||  |      
T  25038561 gtgccactttatgtagctatgatcttagcttatggatcagtaaaatggtggaaaatattttcacctgatcaatgttcaggaatcaaccgttttgttgcac 25038660  T
Q  286 tttttgcagttccattactatcattccat 314  Q
    | |||||||||||| | || |||||||||    
T  25038661 tctttgcagttccacttctttcattccat 25038689  T

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