View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14413_low_2 (Length: 662)

Name: NF14413_low_2
Description: NF14413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14413_low_2
NF14413_low_2
[»] chr7 (4 HSPs)
chr7 (35-116)||(3929268-3929349)
chr7 (297-359)||(3929557-3929619)
chr7 (249-304)||(40234656-40234711)
chr7 (255-302)||(30703822-30703869)
[»] chr5 (3 HSPs)
chr5 (193-268)||(18259745-18259820)
chr5 (256-300)||(36603640-36603684)
chr5 (259-295)||(5411913-5411949)
[»] chr3 (5 HSPs)
chr3 (191-295)||(50384589-50384692)
chr3 (209-296)||(23670422-23670509)
chr3 (209-296)||(24042698-24042785)
chr3 (191-263)||(40397451-40397520)
chr3 (255-291)||(50121164-50121200)
[»] chr2 (4 HSPs)
chr2 (191-263)||(38204679-38204753)
chr2 (191-252)||(6621469-6621530)
chr2 (249-297)||(25833-25881)
chr2 (249-298)||(21348913-21348962)
[»] chr8 (2 HSPs)
chr8 (191-243)||(8108007-8108059)
chr8 (256-297)||(9799198-9799239)
[»] chr1 (6 HSPs)
chr1 (256-298)||(26127373-26127415)
chr1 (191-264)||(15892146-15892222)
chr1 (191-264)||(17872534-17872606)
chr1 (240-295)||(25113901-25113956)
chr1 (256-309)||(36781826-36781879)
chr1 (256-296)||(19940548-19940588)
[»] chr4 (4 HSPs)
chr4 (211-273)||(31938218-31938282)
chr4 (259-307)||(38068825-38068873)
chr4 (259-295)||(47089324-47089360)
chr4 (249-296)||(26784689-26784736)
[»] scaffold0227 (1 HSPs)
scaffold0227 (191-238)||(4786-4833)
[»] chr6 (1 HSPs)
chr6 (254-298)||(14158276-14158320)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 3929268 - 3929349
Alignment:
Q  35 tgatttactcaaccattatgtcttgagaattgcctctacactatacaaaagctatcgagaatcaaaatacattagatactct 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3929268 tgatttactcaacaattatgtcttgagaattgcctctacactatacaaaagctattgagaatcaaaatacattagatactct 3929349  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 3929557 - 3929619
Alignment:
Q  297 atttttatttagtctggtgctaataattttactgatatattgcagatcagcattagtatggac 359  Q
    ||||| ||||||||||||||  ||| ||||||||||||| |||||||||||||| ||||||||    
T  3929557 attttgatttagtctggtgcctatacttttactgatatactgcagatcagcattggtatggac 3929619  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 40234656 - 40234711
Alignment:
Q  249 ttttaacttccttaactagttccccgggggcactggttaacatgacccatttttat 304  Q
    |||||| ||||||||| ||| ||||||| |||| ||||||||||||||||||||||    
T  40234656 ttttaaattccttaaccagtgccccgggagcaccggttaacatgacccatttttat 40234711  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 30703822 - 30703869
Alignment:
Q  255 cttccttaactagttccccgggggcactggttaacatgacccattttt 302  Q
    |||||||||| ||| ||||||||||| ||||||||||||||| |||||    
T  30703822 cttccttaaccagtgccccgggggcattggttaacatgaccctttttt 30703869  T

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Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 18259820 - 18259745
Alignment:
Q  193 ttgtgcattcaaggtcttaaaactataaaaagtgacatttttaattcaaaactctcttttaacttccttaactagt 268  Q
    ||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  18259820 ttgtgcattcaaggtctaaaaagtataaaaaatgacatttttaattcaaaactctcttttaacttctttaactagt 18259745  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 36603684 - 36603640
Alignment:
Q  256 ttccttaactagttccccgggggcactggttaacatgacccattt 300  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||    
T  36603684 ttccttaactagtgcccccggggtactggttaacatgacccattt 36603640  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 5411949 - 5411913
Alignment:
Q  259 cttaactagttccccgggggcactggttaacatgacc 295  Q
    ||||||||||||||||  |||||||||||||||||||    
T  5411949 cttaactagttccccgaaggcactggttaacatgacc 5411913  T

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Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 50384692 - 50384589
Alignment:
Q  191 acttgtgcattcaaggtcttaaaactataaaaagtgacatttttaattcaaaac--tctcttttaacttccttaactagttccccgggggcactggttaa 288  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||||||| |||  ||   |||||| ||||||    
T  50384692 acttgtgcattcaaggtcttaaaagtataaaaagtgacatttttaatttaaaactttctcttttaacttccttaaccagtgtcc---gggcaccggttaa 50384596  T
Q  289 catgacc 295  Q
    |||||||    
T  50384595 catgacc 50384589  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 23670509 - 23670422
Alignment:
Q  209 ttaaaactataaaaagtgacatttttaattcaaaac--tctcttttaacttccttaactagttccccgggggcactggttaacatgaccc 296  Q
    |||||| |||||||||||||||||  |||| |||||  |||||||||||||||||||||||| ||||||  ||| ||||||| |||||||    
T  23670509 ttaaaagtataaaaagtgacattt--aatttaaaaccttctcttttaacttccttaactagtgccccggacgcattggttaaaatgaccc 23670422  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 24042785 - 24042698
Alignment:
Q  209 ttaaaactataaaaagtgacatttttaattcaaaac--tctcttttaacttccttaactagttccccgggggcactggttaacatgaccc 296  Q
    |||||| |||||||||||||||||  |||| |||||  |||||||||||||||||||||||| ||||||  ||| ||||||| |||||||    
T  24042785 ttaaaagtataaaaagtgacattt--aatttaaaaccttctcttttaacttccttaactagtgccccggacgcattggttaaaatgaccc 24042698  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 40397520 - 40397451
Alignment:
Q  191 acttgtgcattcaaggtcttaaaactataaaaagtgacatttttaattcaaaac--tctcttttaacttccttaa 263  Q
    ||||||||||||||||| ||||     |||||||||||||||| |||| |||||  |||||||||||||||||||    
T  40397520 acttgtgcattcaaggttttaa-----taaaaagtgacattttaaatttaaaactttctcttttaacttccttaa 40397451  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 50121164 - 50121200
Alignment:
Q  255 cttccttaactagttccccgggggcactggttaacat 291  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  50121164 cttccttaactagtgccccgggggcattggttaacat 50121200  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 38204679 - 38204753
Alignment:
Q  191 acttgtgcattcaaggtcttaaaactataaaaagtgacatttttaattcaaaac--tctcttttaacttccttaa 263  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||    
T  38204679 acttgtgcattcaaaatcttaaaagtataaaaagtgacatttttaattcaaaactttctcttttaacttccttaa 38204753  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 6621530 - 6621469
Alignment:
Q  191 acttgtgcattcaaggtcttaaaactataaaaagtgacatttttaattcaaaactctctttt 252  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||  |||||| ||||||    
T  6621530 acttgtgcattcaaagtcttaaaaatataaagagtgacatttttaatataaaactttctttt 6621469  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 25881 - 25833
Alignment:
Q  249 ttttaacttccttaactagttccccgggggcactggttaacatgaccca 297  Q
    ||||| ||||||||||||||||||| |||||||| |||| |||||||||    
T  25881 ttttagcttccttaactagttccccaggggcacttgttagcatgaccca 25833  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 21348962 - 21348913
Alignment:
Q  249 ttttaacttccttaactagttccccgggggcactggttaacatgacccat 298  Q
    ||||| ||||||||||||||||||  |||||||| |||| ||||||||||    
T  21348962 ttttagcttccttaactagttccctaggggcacttgttagcatgacccat 21348913  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 8108007 - 8108059
Alignment:
Q  191 acttgtgcattcaaggtcttaaaactataaaaagtgacatttttaattcaaaa 243  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  8108007 acttatgcattcaaggtcttaaaagtataaaatgtgacatttttaatttaaaa 8108059  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 9799239 - 9799198
Alignment:
Q  256 ttccttaactagttccccgggggcactggttaacatgaccca 297  Q
    ||||||||| ||| || |||||||||||||||||||||||||    
T  9799239 ttccttaaccagtgccacgggggcactggttaacatgaccca 9799198  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 26127373 - 26127415
Alignment:
Q  256 ttccttaactagttccccgggggcactggttaacatgacccat 298  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  26127373 ttccttaactagtgccccgggggcactggttaacaagacccat 26127415  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 15892222 - 15892146
Alignment:
Q  191 acttgtgcattcaaggtcttaaaactataaaaagtgacatttttaattcaaaact--ctc-ttttaacttccttaac 264  Q
    |||||| |||| |||||||| ||| |||||||||||| |||||||||| ||||||  ||| ||||||||||||||||    
T  15892222 acttgtacatttaaggtcttgaaagtataaaaagtgatatttttaatttaaaacttcctctttttaacttccttaac 15892146  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 17872534 - 17872606
Alignment:
Q  191 acttgtgcattcaaggtcttaaaactataaaaagtgacatttttaattcaaaactctcttttaacttccttaac 264  Q
    ||||||||||||||||| |||||| |||||| | |||| ||||||||| |||| | ||| ||||||||||||||    
T  17872534 acttgtgcattcaaggt-ttaaaagtataaatattgacttttttaatttaaaattttctcttaacttccttaac 17872606  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 25113901 - 25113956
Alignment:
Q  240 aaaactctcttttaacttccttaactagttccccgggggcactggttaacatgacc 295  Q
    |||| ||| |||| |||||||||||||||  ||||| |||||||||||||||||||    
T  25113901 aaaattctatttttacttccttaactagtgtcccggaggcactggttaacatgacc 25113956  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 36781879 - 36781826
Alignment:
Q  256 ttccttaactagttccccgggggcactggttaacatgacccatttttatttagt 309  Q
    ||||||||||||| || ||||||||| |||||||| ||||||| |||| |||||    
T  36781879 ttccttaactagtgcctcgggggcaccggttaacaggacccatatttaattagt 36781826  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 19940588 - 19940548
Alignment:
Q  256 ttccttaactagttccccgggggcactggttaacatgaccc 296  Q
    ||||||||| ||| |||||||||||| ||||||||||||||    
T  19940588 ttccttaaccagtgccccgggggcaccggttaacatgaccc 19940548  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 31938218 - 31938282
Alignment:
Q  211 aaaactataaaaagtgacatttttaattcaaaac--tctcttttaacttccttaactagttcccc 273  Q
    |||| ||||||||||||||||||||||| |||||  ||||||||||||| |||||| ||| ||||    
T  31938218 aaaagtataaaaagtgacatttttaatttaaaactttctcttttaactttcttaaccagtgcccc 31938282  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 38068873 - 38068825
Alignment:
Q  259 cttaactagttccccgggggcactggttaacatgacccatttttattta 307  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||| ||||    
T  38068873 cttaactagtgccccgggggcactagttaacatgaccctttttttttta 38068825  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 47089324 - 47089360
Alignment:
Q  259 cttaactagttccccgggggcactggttaacatgacc 295  Q
    |||||||||| ||||||||||||||||||||||||||    
T  47089324 cttaactagtgccccgggggcactggttaacatgacc 47089360  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 26784736 - 26784689
Alignment:
Q  249 ttttaacttccttaactagttccccgggggcactggttaacatgaccc 296  Q
    |||| |||| |||||||||| ||||||||||||| |||||||||||||    
T  26784736 tttttactttcttaactagtgccccgggggcactagttaacatgaccc 26784689  T

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Target: scaffold0227 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 4786 - 4833
Alignment:
Q  191 acttgtgcattcaaggtcttaaaactataaaaagtgacatttttaatt 238  Q
    ||||||||||||||| | |||||| |||||||| ||||||||||||||    
T  4786 acttgtgcattcaagattttaaaagtataaaaattgacatttttaatt 4833  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 14158320 - 14158276
Alignment:
Q  254 acttccttaactagttccccgggggcactggttaacatgacccat 298  Q
    |||| ||||||||||  ||||||||||| ||||||||||||||||    
T  14158320 actttcttaactagtgtcccgggggcacaggttaacatgacccat 14158276  T

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