View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14413_low_22 (Length: 226)
Name: NF14413_low_22
Description: NF14413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14413_low_22 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 29964836 - 29965050
Alignment:
| Q |
12 |
atgaacaaagtggtgttattgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggc |
111 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29964836 |
atgaacaaagtggtgttattgacagaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggc |
29964935 |
T |
|
| Q |
112 |
tttatctgaacttttcagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29964936 |
tttatctgaacttttcagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttg |
29965035 |
T |
|
| Q |
212 |
aagaagttgaattac |
226 |
Q |
| |
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||||||||||||||| |
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| T |
29965036 |
aagaagttgaattac |
29965050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 30009962 - 30009748
Alignment:
| Q |
12 |
atgaacaaagtggtgttattgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggc |
111 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30009962 |
atgaacaaagtggtgttattgacagaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggc |
30009863 |
T |
|
| Q |
112 |
tttatctgaacttttcagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30009862 |
tttatctgaacttttcagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttg |
30009763 |
T |
|
| Q |
212 |
aagaagttgaattac |
226 |
Q |
| |
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||||||||||||||| |
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| T |
30009762 |
aagaagttgaattac |
30009748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 30043865 - 30043669
Alignment:
| Q |
29 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttca |
128 |
Q |
| |
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||||||||||||||||||||||| ||||| || |||||||| ||||||| |||||||||| | ||||| ||||||| |||||||||||||||||||| | |
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| T |
30043865 |
attgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgattgaatgggctttatctgaacttttaa |
30043766 |
T |
|
| Q |
129 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaatta |
225 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| | |||||||||||||| |
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| T |
30043765 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaatta |
30043669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 29995344 - 29995540
Alignment:
| Q |
29 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttca |
128 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| ||||||| ||| |||||| | ||||| ||||||| |||||||||||||||||||| | |
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| T |
29995344 |
attgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaatcgatacatctgctacctcgattgaatgggctttatctgaacttttaa |
29995443 |
T |
|
| Q |
129 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaatta |
225 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| ||| |||||||||||||||| |
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| T |
29995444 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaatta |
29995540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 29 - 226
Target Start/End: Complemental strand, 30068383 - 30068185
Alignment:
| Q |
29 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattg-agtgggctttatctgaacttttc |
127 |
Q |
| |
|
||||||||| |||||||||| || ||||| || |||||||| ||||||| |||||||||| | ||||| ||||| | ||||||||||||| |||||| |
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| T |
30068383 |
attgatcgatctaacatcaaagctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgattttaatgggctttatctgcactttta |
30068284 |
T |
|
| Q |
128 |
agacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattac |
226 |
Q |
| |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
30068283 |
aggcatccaagagtgatgaaaattcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttgaagagaaggatttgaagaagttgaattac |
30068185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 30007133 - 30007330
Alignment:
| Q |
29 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttca |
128 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| | |||| | || ||||| | |||||||||||||||||||||||||||||||| | | |
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| T |
30007133 |
attgatcgaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattgagtgggctttatctgaacttctaa |
30007232 |
T |
|
| Q |
129 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattac |
226 |
Q |
| |
|
| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||||| |
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|
| T |
30007233 |
ggcattcaagagtgatgaaaattcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttgaagagaaggatctgaagaagtttaattac |
30007330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 29944652 - 29944849
Alignment:
| Q |
29 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttca |
128 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| |||||||| | || |||| | ||||||| ||||||||||||||||| |||||||| | |
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|
| T |
29944652 |
attgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctttatccgaacttttaa |
29944751 |
T |
|
| Q |
129 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattac |
226 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||| || ||||||||||| || |||||| |
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|
| T |
29944752 |
ggcatccaagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagaaaaggatttgaagaattttaattac |
29944849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 29953585 - 29953766
Alignment:
| Q |
29 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| | ||||| |||||| ||||||||||| |||||| | | |
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|
| T |
29953585 |
attgatcgaactaacatcaaggcaattttactagacttgactgtggcagcaattgatacatctgctaccgtgattgaatgggctttatccgaacttctaa |
29953684 |
T |
|
| Q |
129 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgattt |
210 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||| |
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|
| T |
29953685 |
gacatccaagggtaatgaaaatccttcaagatgagatacaaaatgaagtaggaaatgaaagaatgattgaagagaaagattt |
29953766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 29946620 - 29946814
Alignment:
| Q |
25 |
tgttattgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggcttt-atctgaact |
123 |
Q |
| |
|
||||||||||||| | ||||| |||||| | |||||||||| | || |||||| |||||| ||| | ||||| ||||||| |||||||| ||||||||| |
|
|
| T |
29946620 |
tgttattgatcgaccaaacattaaggca-tattactagacacggttatggcagcaattgaaacatctgctaccgcgattgaatgggcttttatctgaact |
29946718 |
T |
|
| Q |
124 |
tttcagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagtt |
219 |
Q |
| |
|
||| || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
29946719 |
tttaaggaatccaagagtgatgaaaacccttcaagatgatatacaaaatgaagtaggaaataaaagaatggtcgaagagaaagatttagagaagtt |
29946814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 30001017 - 30001214
Alignment:
| Q |
29 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttca |
128 |
Q |
| |
|
||||||||||| | ||||||||| ||||| || |||||||| | |||| |||||||||| | | | | ||| ||||||||||||||||||||||| | |
|
|
| T |
30001017 |
attgatcgaacgatcatcaaggctattttgctcgacatgataggggcatcaattgatacatcttcaaacgtgatagagtgggctttatctgaacttttaa |
30001116 |
T |
|
| Q |
129 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattac |
226 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||| || ||||||||||| || |||||| |
|
|
| T |
30001117 |
ggcatccaagagtgatgaaaattcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagaaaaggatttgaagaattttaattac |
30001214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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