View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14413_low_23 (Length: 216)
Name: NF14413_low_23
Description: NF14413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14413_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 5329434 - 5329633
Alignment:
| Q |
1 |
ctgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaaccagagtcagtactcttgaacaggagttgggtgcaac |
100 |
Q |
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| T |
5329434 |
ctgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaaccagagtcagtactcttgaacaggagttgggtgcaac |
5329533 |
T |
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| Q |
101 |
caaaaaggtactggtaatgcttctttagtttattttgggaaataaacgaataaactatcaatttagtcttcaaattgtcaatgtctctccaatttattct |
200 |
Q |
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| T |
5329534 |
caaaaaggtactggtaatgcttctttagtttattttgggaaataaacgaataaaccatcaatttagtcttcaaattgtcaatgtctctccaatttattct |
5329633 |
T |
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Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 54775597 - 54775796
Alignment:
| Q |
1 |
ctgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaaccagagtcagtactcttgaacaggagttgggtgcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775597 |
ctgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaaccagagtcagtactcttgaacaggagttgggtgcaac |
54775696 |
T |
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| Q |
101 |
caaaaaggtactggtaatgcttctttagtttattttgggaaataaacgaataaactatcaatttagtcttcaaattgtcaatgtctctccaatttattct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775697 |
caaaaaggtactggtaatgcttctttagtttattttgggaaataaacgaataaaccatcaatttagtcttcaaattgtcaatgtctctccaatttattct |
54775796 |
T |
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