View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14413_low_3 (Length: 624)
Name: NF14413_low_3
Description: NF14413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14413_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 15 - 605
Target Start/End: Original strand, 35563647 - 35564242
Alignment:
| Q |
15 |
cagagactattctttgatcaacattctaactaattttgtccaaaataaaaatctaaccaatatgtttgcaaaataaatttaaacaacaaatgttagtatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35563647 |
cagagactattctttgatcaacattctaactaattttgtccaaaataaaaatctaaccaatatgtttgcaaaataaatttaaacaacaaatgttagtatt |
35563746 |
T |
|
| Q |
115 |
atttgcaaagaaattattaaatttgtctaaaaattggagatgggtttatttttcaaattctcattttgatagctaattattcttttaaaggaataattct |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35563747 |
gtttgcaaagaaattatgaaatttgtctaaaaattagagacggatttatttttcaaattctcattttgatagctaattattcttttaaaggaattattct |
35563846 |
T |
|
| Q |
215 |
attattttaggtgtaacctactttaagaaaaaagggtgtgttagttcttctataactattgtttttactatttgtttcgtaatgttttggaactatgtca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35563847 |
attattttaggtgtaacctactttaagaaaaaagggtgtgttagttcttctataactattgtttttactatttgtttcgtaatgttttggaactatgtca |
35563946 |
T |
|
| Q |
315 |
cagtataaattgaaaatgacattttcttttatagaaatgaaagtgacgtattcataatatgaatggaatcatatcaatataatattg-----aaactttg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
35563947 |
cagtataaattgaaaatgacattttcttttatagaaatgaaagtgacgtattcataatatgaatggaatcatatcaatataaaattgaaattaaactttg |
35564046 |
T |
|
| Q |
410 |
cacataaaatattgtcattaatatatattttattccatgttgatgttgcagnnnnnnntgagcattccggtaacaatttcacgtgtcttaaaatacatcc |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35564047 |
cacataaaatattgtcattaatatatattttattccatgttgatgttgcagaaaaaaatgagcattccggtaacaatttcacgtgtcttaaaatacatcc |
35564146 |
T |
|
| Q |
510 |
ctgatttacaaaagcaggtgcaaggacttactaagaaaaaagaagagcttctatcaagaatttctcatcgacaagaatatgcagttaacaaagaat |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35564147 |
ctgatttacaaaagcaggtgcaaggacttaccaagaaaaaagaagagcttctatcaagaatttctcatcgacaagaatatgcagttaacaaagaat |
35564242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University