View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14413_low_4 (Length: 614)

Name: NF14413_low_4
Description: NF14413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14413_low_4
NF14413_low_4
[»] chr2 (17 HSPs)
chr2 (17-511)||(5816279-5816792)
chr2 (21-353)||(5813299-5813642)
chr2 (509-605)||(5816867-5816963)
chr2 (219-401)||(29171310-29171502)
chr2 (172-370)||(14389771-14389982)
chr2 (280-392)||(14391678-14391787)
chr2 (280-370)||(9924413-9924504)
chr2 (62-209)||(35549742-35549886)
chr2 (38-115)||(14389686-14389763)
chr2 (418-505)||(17323219-17323306)
chr2 (336-393)||(5813234-5813288)
chr2 (430-501)||(35549559-35549630)
chr2 (289-369)||(41973809-41973889)
chr2 (535-573)||(14392159-14392197)
chr2 (349-404)||(17323298-17323350)
chr2 (512-576)||(35549372-35549436)
chr2 (457-505)||(38411875-38411923)
[»] chr3 (6 HSPs)
chr3 (52-403)||(49089479-49089840)
chr3 (46-370)||(34618726-34619057)
chr3 (182-391)||(3964743-3964960)
chr3 (55-209)||(52655449-52655603)
chr3 (302-398)||(3956680-3956773)
chr3 (224-284)||(3956776-3956835)
[»] chr5 (12 HSPs)
chr5 (46-404)||(13858033-13858405)
chr5 (56-284)||(6454331-6454559)
chr5 (280-402)||(90636-90755)
chr5 (78-390)||(11664517-11664845)
chr5 (89-370)||(13860043-13860341)
chr5 (282-398)||(40880389-40880502)
chr5 (282-370)||(27366121-27366209)
chr5 (416-505)||(36070532-36070621)
chr5 (512-582)||(33623007-33623076)
chr5 (512-582)||(33625294-33625363)
chr5 (341-401)||(36070650-36070707)
chr5 (237-284)||(90764-90811)
[»] chr1 (36 HSPs)
chr1 (19-402)||(3448802-3449195)
chr1 (78-393)||(11670800-11671126)
chr1 (52-209)||(46135719-46135876)
chr1 (218-399)||(10833513-10833704)
chr1 (141-389)||(29292626-29292883)
chr1 (21-210)||(3447248-3447435)
chr1 (280-505)||(10162980-10163188)
chr1 (75-278)||(12180789-12180993)
chr1 (172-397)||(36814105-36814340)
chr1 (280-402)||(4032930-4033047)
chr1 (17-284)||(4033064-4033320)
chr1 (280-392)||(11672410-11672519)
chr1 (296-370)||(19985653-19985726)
chr1 (162-284)||(21087712-21087834)
chr1 (220-284)||(36817298-36817362)
chr1 (21-140)||(12181479-12181597)
chr1 (182-391)||(13993527-13993744)
chr1 (280-350)||(12180992-12181062)
chr1 (290-367)||(35238785-35238862)
chr1 (224-284)||(20771178-20771237)
chr1 (512-575)||(11672084-11672147)
chr1 (230-284)||(11672528-11672582)
chr1 (301-394)||(19983409-19983500)
chr1 (300-370)||(19984903-19984972)
chr1 (417-505)||(11672265-11672351)
chr1 (422-505)||(3448706-3448789)
chr1 (156-284)||(12181353-12181481)
chr1 (512-579)||(35238543-35238610)
chr1 (419-501)||(10833706-10833788)
chr1 (58-124)||(13995591-13995656)
chr1 (58-124)||(14003705-14003770)
chr1 (283-395)||(19984145-19984253)
chr1 (155-209)||(29263490-29263544)
chr1 (287-367)||(36817378-36817459)
chr1 (286-370)||(11673923-11674006)
chr1 (52-112)||(31037646-31037706)
[»] chr7 (14 HSPs)
chr7 (52-389)||(41397530-41397882)
chr7 (52-284)||(48572655-48572888)
chr7 (21-402)||(22130323-22130714)
chr7 (21-402)||(40500392-40500783)
chr7 (280-370)||(26199072-26199162)
chr7 (146-370)||(30879306-30879542)
chr7 (156-326)||(22112125-22112308)
chr7 (156-326)||(40494143-40494326)
chr7 (316-405)||(48015142-48015228)
chr7 (53-114)||(26198901-26198962)
chr7 (509-582)||(33541966-33542038)
chr7 (340-392)||(48013444-48013493)
chr7 (349-391)||(3042882-3042923)
chr7 (524-573)||(17868469-17868518)
[»] chr4 (19 HSPs)
chr4 (46-370)||(4897422-4897757)
chr4 (37-370)||(40603835-40604182)
chr4 (78-392)||(42430749-42431077)
chr4 (46-284)||(36761719-36761958)
chr4 (78-393)||(22497712-22498037)
chr4 (52-200)||(49408661-49408809)
chr4 (296-405)||(4044684-4044790)
chr4 (155-280)||(49058293-49058418)
chr4 (423-505)||(22497578-22497660)
chr4 (224-284)||(3071593-3071653)
chr4 (229-326)||(49408835-49408945)
chr4 (281-326)||(32011134-32011179)
chr4 (429-505)||(3071052-3071128)
chr4 (297-391)||(42181072-42181163)
chr4 (17-73)||(49058174-49058230)
chr4 (288-326)||(36761975-36762013)
chr4 (155-209)||(38705650-38705704)
chr4 (343-393)||(32011223-32011270)
chr4 (422-502)||(49058452-49058532)
[»] chr6 (7 HSPs)
chr6 (60-370)||(1520268-1520591)
chr6 (229-364)||(35026018-35026166)
chr6 (280-402)||(2512527-2512646)
chr6 (218-284)||(7300268-7300334)
chr6 (298-405)||(7300526-7300630)
chr6 (434-505)||(7295445-7295516)
chr6 (346-394)||(7295538-7295584)
[»] chr8 (13 HSPs)
chr8 (20-392)||(7305348-7305726)
chr8 (60-370)||(13014591-13014912)
chr8 (224-370)||(7302832-7302991)
chr8 (220-370)||(26228627-26228790)
chr8 (224-403)||(38064195-38064384)
chr8 (161-274)||(13013440-13013553)
chr8 (291-405)||(39546799-39546910)
chr8 (340-402)||(13012867-13012926)
chr8 (181-280)||(39544793-39544892)
chr8 (280-325)||(13012925-13012970)
chr8 (53-118)||(7303097-7303161)
chr8 (47-104)||(11361958-11362014)
chr8 (535-582)||(38063749-38063796)


Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 5816279 - 5816792
Alignment:
Q  17 aggttttaggtccccaagttttttaagcaccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5816279 aggttttaggtccccaagttttttaagcaccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcg 5816378  T
Q  117 aaactcaaacggtatgtaaatttggagttatagtataggttgcaagttcgattttaatgc-aagttattttattggttatttgaatcttaaattannnnn 215  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||         
T  5816379 aaactcaaatggtatgtaaatttggagttgtagtataggttgcaagttcgattttaatgccaagctattttattggttatttgaatcttaaattattatt 5816478  T
Q  216 nn-cctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtg-------------tgtaaaagtaaaaaattaattt 301  Q
       ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||             ||||||||||||||||||||||    
T  5816479 tttcctcaaatttctatcaatataattcgatgtcggttgttctaaatatatcaagataagtagtgtgtaatcaaagtgtgtaaaagtaaaaaattaattt 5816578  T
Q  302 atattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacgcacg 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5816579 atattagtatcatttcaatattattcagttatataaaaatctctaacaattgataaataatgtctatatattaaaatattattttcaacacacacgcacg 5816678  T
Q  402 ----cacgggtatgtgcctgcgcgcacacacatatatattacaaaggccatgcactaagggagttgactatatcaaaagaggacatactctcacaatgtg 497  Q
        |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  5816679 cacccacgggtatgtgtctgcgcgcacacacatatatattacaaaggccatgcactaagggagttgactatagcaaaagaggatatactctcacaatgtg 5816778  T
Q  498 acaaaccatattta 511  Q
    ||||||||||||||    
T  5816779 acaaaccatattta 5816792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 21 - 353
Target Start/End: Complemental strand, 5813642 - 5813299
Alignment:
Q  21 tttaggtccccaagttttttaagcaccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaac 120  Q
    |||||| ||||||||||||||  | ||||| || ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  5813642 tttaggcccccaagttttttagtctccgtattaagcctcgtattttt-tctttgaaaatatttttgtatgtcaaattttgtaaacatgttgacgcgaaac 5813544  T
Q  121 tcaaacggtatgtaaatttggagttatagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncct 220  Q
    | ||  | ||||||||| |||||||||||| || ||||||||||| |||||||||| |  |||||||||||||||||||||||||||||        |||    
T  5813543 taaagtgatatgtaaatgtggagttatagtttatgttgcaagttcaattttaatgctatctattttattggttatttgaatcttaaattcttttttccct 5813444  T
Q  221 caaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtg-------------tgtaaaagtaaaaaattaatttatatta 307  Q
    ||||||||||||||| |||||||| |||  |||||||||||||||||||| | ||||||             ||||||||||||||||||| |||||||     
T  5813443 caaattcctatcaatctaattcgaagtccattgttctaaatatatcaagataggtagtgtgtaataaaagtttgtaaaagtaaaaaattaa-ttatattt 5813345  T
Q  308 gtatcatttcaatattattcagttatataaaaatctctaacaattg 353  Q
    ||||||||| |||||||||  ||||| | |||||| ||||||||||    
T  5813344 gtatcattttaatattattatgttattttaaaatcactaacaattg 5813299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 509 - 605
Target Start/End: Original strand, 5816867 - 5816963
Alignment:
Q  509 ttatctctaaatggacttaaaatatttctatttaaatttcactttagacctaaaaatacattgggccgaccctgtctctattgcctctgcttcatct 605  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5816867 ttatctctaaacggacttaaaatatttctatttaaatttcactttagacctaaaaatacattgggccgaccctgtctctattgcctctgcttcatct 5816963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 219 - 401
Target Start/End: Complemental strand, 29171502 - 29171310
Alignment:
Q  219 ctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaa-------------aagtaaaaaattaatttatat 305  Q
    |||| |||||||||||| ||||||||||| ||||||| ||||||||| ||||||||| ||||||||             |||||||| | ||||||||||    
T  29171502 ctcatattcctatcaatctaattcgatgttggttgttttaaatatattaagacaagttgtgtgtaatcaaagtttgtaaaagtaaaacaataatttatat 29171403  T
Q  306 tagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacgcacg 401  Q
    | |||| ||||||||||||||  ||||| | || || |||||||||||||||||||||||||||   | |||||||||||||||||||| ||||||    
T  29171402 ttgtattatttcaatattattttgttattttaagatttctaacaattggtaaataatgtctata---ttaaatattattttcaacacacgcgcacg 29171310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 172 - 370
Target Start/End: Original strand, 14389771 - 14389982
Alignment:
Q  172 aatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagac 271  Q
    ||||| || |||||||||||||||||| |||||||||||       | ||  ||||||||||||  ||||| |||||| ||||||||||||||| |||||    
T  14389771 aatgctaggtattttattggttatttgtatcttaaattatttttgccttctgattcctatcaatcgaattcaatgtcgattgttctaaatatattaagac 14389870  T
Q  272 aagtagtgtgta-------------aaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaa 358  Q
    ||||||||||||             ||||||||||||||||||||||  |||||||| ||||||| ||  ||||| | |  |||||| ||||||||||||    
T  14389871 aagtagtgtgtaattaaaatttgtaaaagtaaaaaattaatttatatctgtatcattccaatattgttttgttattttatgatctcttacaattggtaaa 14389970  T
Q  359 taatgtctatat 370  Q
    ||||||||||||    
T  14389971 taatgtctatat 14389982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 280 - 392
Target Start/End: Original strand, 14391678 - 14391787
Alignment:
Q  280 tgtaaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaata 379  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||  ||||| | |  ||||||||||||||||||||||| ||||||   | |||||    
T  14391678 tgtaaaagtaaaaaactaatttatatttgtatcatttcaatattattttgttattttatgatctctaacaattggtaaataatatctata---ttaaata 14391774  T
Q  380 ttattttcaacac 392  Q
    |||||||||||||    
T  14391775 ttattttcaacac 14391787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 9924413 - 9924504
Alignment:
Q  280 tgtaaaagtaaaa-aattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatat 370  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||||||  ||||| | || ||||| |||||||||||||||||||||||||    
T  9924413 tgtaaaagtaaaaaaattaattcatatttgtatcatttcaatattattttgttattttaagatctcaaacaattggtaaataatgtctatat 9924504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 62 - 209
Target Start/End: Complemental strand, 35549886 - 35549742
Alignment:
Q  62 atttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagtataggttgcaa 161  Q
    |||||| |||||||||||||||| |||  |||||||| |||||| | |||||||||| |||||  |||||||||||   |||| |||||    | || ||    
T  35549886 atttttatctttgaaaatattttcgtacatcaaatttcgtaaacctgttcactcgaagctcaagtggtatgtaaataaagagtcatagt---tgatgtaa 35549790  T
Q  162 gttcgattttaatgcaagttattttattggttatttgaatcttaaatt 209  Q
    ||||||||||||||| |  |||||||||||||||||||| ||||||||    
T  35549789 gttcgattttaatgctacctattttattggttatttgaaccttaaatt 35549742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 14389686 - 14389763
Alignment:
Q  38 tttaagcaccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactc 115  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||| ||| |||||||||| |||| || |||||||    
T  14389686 tttaagccccgtattaggcctcatatttttatctttgaaaatattttcgtacgtcaaattttataaatatgttcactc 14389763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 418 - 505
Target Start/End: Complemental strand, 17323306 - 17323219
Alignment:
Q  418 cgcgcacacacatatatattacaaaggccatgcactaagggagttgactatatcaaaagaggacatactctcacaatgtgacaaacca 505  Q
    ||||| |||||| |||||||| ||||| || ||||||| | |||||| |||| |||||||||| ||| ||||||||||||||||||||    
T  17323306 cgcgcgcacacacatatattaaaaaggtcacgcactaacgaagttgattatagcaaaagaggatatattctcacaatgtgacaaacca 17323219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 5813288 - 5813234
Alignment:
Q  336 aaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacaca 393  Q
    ||||||||||||||||| ||||||||||||||||   | |||||||||||||||||||    
T  5813288 aaaaatctctaacaatttgtaaataatgtctata---ttaaatattattttcaacaca 5813234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 430 - 501
Target Start/End: Complemental strand, 35549630 - 35549559
Alignment:
Q  430 tatatattacaaaggccatgcactaagggagttgactatatcaaaagaggacatactctcacaatgtgacaa 501  Q
    ||||||||| ||||| ||  |||||| |||||||| |||| | |||||||| ||||||||||||||||||||    
T  35549630 tatatattaaaaaggtcacccactaacggagttgattatagcgaaagaggatatactctcacaatgtgacaa 35549559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 369
Target Start/End: Original strand, 41973809 - 41973889
Alignment:
Q  289 aaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctata 369  Q
    |||||||||||||||||   ||| ||||||||||||||  | ||| | || || |||||||||||||||||||||| ||||    
T  41973809 aaaaaattaatttatatctatattatttcaatattattttgctattttaagatttctaacaattggtaaataatgtttata 41973889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 573
Target Start/End: Original strand, 14392159 - 14392197
Alignment:
Q  535 tctatttaaatttcactttagacctaaaaatacattggg 573  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  14392159 tctatttaaatttctcattagacctaaaaatacattggg 14392197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 404
Target Start/End: Complemental strand, 17323350 - 17323298
Alignment:
Q  349 aattggtaaataatgtctatatattaaaatattattttcaacacacacgcacgcac 404  Q
    ||||||||||||||||||||||    |||||||||||||||||| ||||| |||||    
T  17323350 aattggtaaataatgtctatatt---aaatattattttcaacacgcacgcgcgcac 17323298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 576
Target Start/End: Complemental strand, 35549436 - 35549372
Alignment:
Q  512 tctctaaatggacttaaaatatttctatttaaatttcactttagacctaaaaatacattgggccg 576  Q
    |||||||| | ||||||||  | |||||||||||||  |||||| | ||||||||||||||||||    
T  35549436 tctctaaacgcacttaaaaagtctctatttaaattttgctttaggcgtaaaaatacattgggccg 35549372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 505
Target Start/End: Complemental strand, 38411923 - 38411875
Alignment:
Q  457 ggagttgactatatcaaaagaggacatactctcacaatgtgacaaacca 505  Q
    |||||||| |||| | |||||||| ||||| ||||||||||||||||||    
T  38411923 ggagttgattatagcgaaagaggatatactttcacaatgtgacaaacca 38411875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 52 - 403
Target Start/End: Original strand, 49089479 - 49089840
Alignment:
Q  52 taggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagta 151  Q
    ||||||||  || |||||||||  ||||||||| ||| |||||||||||||||||| |||||||||| |||||  | |||||||||  |||||| ||||     
T  49089479 taggcctccaatctttgtctttacaaatattttcgtacgtcaaattttgtaaacatgttcactcgaagctcaagtgatatgtaaatgaggagttgtagtt 49089578  T
Q  152 taggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggt 251  Q
    || |||||||||| ||||| ||||| || ||||||||||||||||||| |||||||||        | | | |||||||||||| |||||| ||||||||    
T  49089579 tatgttgcaagtttgatttcaatgctagctattttattggttatttgactcttaaattctttttgccttaagattcctatcaatctaattcaatgtcggt 49089678  T
Q  252 tgttctaaatatatcaagacaagtagtgt-------------gtaaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaa 338  Q
    |||||||||||||| ||||||||| ||||             |||||| ||||||||||||||||||| |||||||||||||||||||  ||||| | ||    
T  49089679 tgttctaaatatattaagacaagtggtgtgtaatcaacgttcgtaaaattaaaaaattaatttatatttgtatcatttcaatattattttgttattttaa 49089778  T
Q  339 aatctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacgcacgca 403  Q
    ||||||||| |||| ||| ||||||| ||||   | ||||||||||||||||| |||||| ||||    
T  49089779 aatctctaataattagtatataatgtttata---ttaaatattattttcaacaaacacgcccgca 49089840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 46 - 370
Target Start/End: Complemental strand, 34619057 - 34618726
Alignment:
Q  46 ccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagtt 145  Q
    ||||| ||||| ||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||||||| |||||  |||||||||||  |||||     
T  34619057 ccgtattaggcttcatatttttgtctttgaaaatattttcgtacatcaaattttgtaaacatgttcactcgaagctcaagtggtatgtaaatgaggagtc 34618958  T
Q  146 atagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgat 245  Q
    ||| |  | |||||||||||||||| ||||| |||||||| |           |  ||||||||        | |||||||||||||||| ||||| |||    
T  34618957 ataattcatgttgcaagttcgatttcaatgctagttatttga--------accatgcttaaattctttttgccttcaaattcctatcaatctaatttgat 34618866  T
Q  246 gtcggttgttctaa--atatatcaagacaagtagtg-------------tgtaaaagtaaaaaattaatttatattagtatcatttcaatattattcagt 330  Q
    ||||||||||||||  |||||| |||| ||||||||             |||||||||||||||||||||||||||  ||| ||||||||||||||  ||    
T  34618865 gtcggttgttctaaatatatattaagaaaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttctataatttcaatattattttgt 34618766  T
Q  331 tatataaaaatctctaacaattggtaaataatgtctatat 370  Q
    ||| | |  |||||||||||||||||||||||||||||||    
T  34618765 tattttatgatctctaacaattggtaaataatgtctatat 34618726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 391
Target Start/End: Original strand, 3964743 - 3964960
Alignment:
Q  182 attttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtg 281  Q
    ||||||||||||||||| ||||||||||        | ||||||| |||| ||| ||| | |||||||||||||  |||||||| |||||||||||||||    
T  3964743 attttattggttatttggatcttaaattctttttgccttcaaatttctattaatctaacttgatgtcggttgttggaaatatattaagacaagtagtgtg 3964842  T
Q  282 taa-------------aagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctat 368  Q
    |||             || ||||||||||||||||||| |||||| |||||||||||   ||||| | || |  |||||||||||||||||||||  |||    
T  3964843 taatcaaagtttgtaaaaataaaaaattaatttatatttgtatcaattcaatattatcttgttatttcaaga--tctaacaattggtaaataatg--tat 3964938  T
Q  369 atattaaaatattattttcaaca 391  Q
    ||||| |||||||||||| ||||    
T  3964939 atatt-aaatattatttttaaca 3964960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 55 - 209
Target Start/End: Original strand, 52655449 - 52655603
Alignment:
Q  55 gcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagtatag 154  Q
    |||| |||||||||| |||||||||||||| ||| || | ||||||||||||| ||||||| || |||||   |||| |||||   |||  ||| | ||     
T  52655449 gccttatatttttgtttttgaaaatattttcgtacgttagattttgtaaacatgttcactcaaagctcaagttgtatttaaatggagagccataatttat 52655548  T
Q  155 gttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaatt 209  Q
    |||||||||||||||| |||||| | ||||||| | ||||||||||  |||||||    
T  52655549 gttgcaagttcgatttcaatgcatgctattttactagttatttgaactttaaatt 52655603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 302 - 398
Target Start/End: Complemental strand, 3956773 - 3956680
Alignment:
Q  302 atattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacgc 398  Q
    ||||| ||||||||||||||| |||  ||||| | |  | ||| ||||||||||||||||||||||||   | ||||||||||||||||||||||||    
T  3956773 atatttgtatcatttcaatatgattttgttattttatgacctccaacaattggtaaataatgtctata---tcaaatattattttcaacacacacgc 3956680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 3956835 - 3956776
Alignment:
Q  224 attcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaa 284  Q
    |||||||||||| ||||| ||| |||||||||| |||||||| |||| ||||| |||||||    
T  3956835 attcctatcaatctaatttgatttcggttgttccaaatatattaagagaagta-tgtgtaa 3956776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 3e-56; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 46 - 404
Target Start/End: Complemental strand, 13858405 - 13858033
Alignment:
Q  46 ccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagtt 145  Q
    ||||| |||||||||||||||||| |||||||||||||||| | |||||||||||||||||| |||||||||| |||||  |||||||||||   ||||     
T  13858405 ccgtattaggcctcatatttttgtttttgaaaatatttttgaacgtcaaattttgtaaacatgttcactcgaagctcaagtggtatgtaaatgatgagtc 13858306  T
Q  146 atagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaa----tcttaaattannnnnnncctcaaattcctatcaatataatt 241  Q
    ||| |  | |||||||||||||||| ||||| || ||||||| | ||||||||||     ||||||||        | ||| |||||||||||| |||||    
T  13858305 ataattcatgttgcaagttcgatttcaatgctagctattttactagttatttgaaccatacttaaattctttttgccttcagattcctatcaatctaatt 13858206  T
Q  242 cgatgtcggttgttctaaatatatcaagacaagtagtg-------------tgtaaaagtaaaaaattaatttatattagtatcatttcaatattattca 328  Q
    |||||||||||||| ||||||||| |||||||||||||             ||||||||||||| ||||||||||||| |||| ||||||||||||||      
T  13858205 cgatgtcggttgttttaaatatattaagacaagtagtgtgtaataaaagtttgtaaaagtaaaacattaatttatatttgtataatttcaatattatttt 13858106  T
Q  329 gttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacgcacgcac 404  Q
    ||||| | |  ||||||||||||||||||||||| ||||||   | |||||| |||||||| || |||||||||||    
T  13858105 gttattttatgatctctaacaattggtaaataatatctata---tgaaatatcattttcaaaacgcacgcacgcac 13858033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 56 - 284
Target Start/End: Complemental strand, 6454559 - 6454331
Alignment:
Q  56 cctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagtatagg 155  Q
    |||||||||||| | |||||||||||||  |||  ||||||||||||||||| ||||||||||  ||||  |||||| ||||   |||| |||||  |      
T  6454559 cctcatatttttatgtttgaaaatatttccgtacatcaaattttgtaaacatgttcactcgaagttcaagtggtatgcaaatgaagagtcatagttcata 6454460  T
Q  156 ttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgtt 255  Q
    ||| ||||||||||| ||||| ||  ||||||||||||||||||| ||||||||        | ||| ||||||||||||  ||||||| ||||||||||    
T  6454459 ttgtaagttcgatttcaatgctaggaattttattggttatttgaaccttaaattctttttgccttcagattcctatcaatcgaattcgaggtcggttgtt 6454360  T
Q  256 ctaaatatatcaagacaagtagtgtgtaa 284  Q
    |||||||||| ||||||||||||||||||    
T  6454359 ctaaatatattaagacaagtagtgtgtaa 6454331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 280 - 402
Target Start/End: Complemental strand, 90755 - 90636
Alignment:
Q  280 tgtaaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaata 379  Q
    ||||||||||||||||||||||||||| |||| ||||| ||||||||  ||||| | ||||| |||||||||||||||||||||||||||   | |||||    
T  90755 tgtaaaagtaaaaaattaatttatatttgtattatttccatattattttgttattttaaaatttctaacaattggtaaataatgtctata---ttaaata 90659  T
Q  380 ttattttcaacacacacgcacgc 402  Q
    |||||||||||||||||||||||    
T  90658 ttattttcaacacacacgcacgc 90636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 78 - 390
Target Start/End: Complemental strand, 11664845 - 11664517
Alignment:
Q  78 atatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagtataggttgcaagttcgatttt------ 171  Q
    ||||||| ||| |||||||||| ||||||| || ||||||| |||||  |||||||||||   |||| |||||  | || ||||||| ||||||          
T  11664845 atattttcgtacgtcaaattttataaacatgttaactcgaagctcaagtggtatgtaaatgaagagtcatagttcatgtagcaagtttgattttgagttc 11664746  T
Q  172 aatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagac 271  Q
    ||||| |  |||||||||||||||||||| ||| ||||        | ||| ||| |||||||| ||||||||||||||||||| ||||||||| | |||    
T  11664745 aatgctaactattttattggttatttgaaccttgaattccttttgccttcagatttctatcaatctaattcgatgtcggttgttttaaatatattaggac 11664646  T
Q  272 aagtagtgtgtaa-------------aagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaa 358  Q
    ||||||| |||||             |||||||||||||||||||||| ||| |||||||||||||||  ||||| | || |||||||||||||| ||||    
T  11664645 aagtagtatgtaatcaaagtttgtgaaagtaaaaaattaatttatatttgtagcatttcaatattattttgttattttaagatctctaacaattgataaa 11664546  T
Q  359 taatgtctatatattaaaatattattttcaac 390  Q
    |||||||||||   | ||||||||||||||||    
T  11664545 taatgtctata---ttaaatattattttcaac 11664517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 89 - 370
Target Start/End: Original strand, 13860043 - 13860341
Alignment:
Q  89 tgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagtataggttgcaagttcgattttaatgcaagttattttat 188  Q
    ||||||||||||||||||| |||| | ||| |||||  |||||||||||  ||||| ||| |  | ||| |||||||||||| | ||  || ||||||||    
T  13860043 tgtcaaattttgtaaacatgttcatttgaagctcaagtggtatgtaaatgaggagtcataattcatgtttcaagttcgatttcagtgttagctattttat 13860142  T
Q  189 tggttatttgaatc----ttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtg----- 279  Q
    | |||||||||| |    |||||||        | ||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||         
T  13860143 tagttatttgaaccatacttaaattctttttgccttcagattcctatcaatctaattcgatgtcggttgttctaaatatattaagacaagtagtgtgtaa 13860242  T
Q  280 --------tgtaaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatat 370  Q
            ||||||||||||  ||||||||||||| |||| ||||||||||||||  ||||| | |  ||||||||||||||||||||||| |||||||    
T  13860243 tcaaagtttgtaaaagtaaaccattaatttatatttgtataatttcaatattattttgttattttatgatctctaacaattggtaaataatatctatat 13860341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 282 - 398
Target Start/End: Original strand, 40880389 - 40880502
Alignment:
Q  282 taaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatatt 381  Q
    |||||||| |||||||||||||||| |||||||||||||||||||  ||||| | | ||||||||||||| |||||||||| ||||||   | |||||||    
T  40880389 taaaagtacaaaattaatttatatttgtatcatttcaatattattttgttattttataatctctaacaatcggtaaataatatctata---ttaaatatt 40880485  T
Q  382 attttcaacacacacgc 398  Q
    |||||||||||||||||    
T  40880486 attttcaacacacacgc 40880502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 370
Target Start/End: Complemental strand, 27366209 - 27366121
Alignment:
Q  282 taaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatat 370  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||  ||||| | |  |||||||| ||||| ||||||||||||||||    
T  27366209 taaaagtaaaatattaatttatatttgtatcatttgaatattattttgttattttatgatctctaaaaattgataaataatgtctatat 27366121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 505
Target Start/End: Complemental strand, 36070621 - 36070532
Alignment:
Q  416 tgcgcgcacacacatatatattacaaaggccatgcactaagggagttgactatatcaaaagaggacatactctcacaatgtgacaaacca 505  Q
    |||||||||||||||| |||||| ||||| |||||||||| |||||||| ||||   |||||||| ||||||| | ||| |||| |||||    
T  36070621 tgcgcgcacacacatacatattaaaaaggtcatgcactaacggagttgattatagtgaaagaggatatactcttataatttgactaacca 36070532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 512 - 582
Target Start/End: Complemental strand, 33623076 - 33623007
Alignment:
Q  512 tctctaaatggacttaaaatatttctatttaaatttcactttagacctaaaaatacattgggccgaccctg 582  Q
    |||||||| | |||||||| || | |||||||||||| |||||||| | ||||||||||||||||||||||    
T  33623076 tctctaaacgcacttaaaaaatctttatttaaatttcgctttagacat-aaaatacattgggccgaccctg 33623007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 512 - 582
Target Start/End: Complemental strand, 33625363 - 33625294
Alignment:
Q  512 tctctaaatggacttaaaatatttctatttaaatttcactttagacctaaaaatacattgggccgaccctg 582  Q
    |||||||| | |||||||| || | |||||||||||| |||||||| | ||||||||||||||||||||||    
T  33625363 tctctaaacgcacttaaaaaatctttatttaaatttcgctttagacat-aaaatacattgggccgaccctg 33625294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 36070707 - 36070650
Alignment:
Q  341 tctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacgcacg 401  Q
    ||||| |||||||||||||||||||||||   | |||||||||||||||||| ||||||||    
T  36070707 tctctgacaattggtaaataatgtctata---ttaaatattattttcaacacccacgcacg 36070650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 90811 - 90764
Alignment:
Q  237 taattcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaa 284  Q
    |||||| |||| ||||||| ||||||||| ||||||||||||||||||    
T  90811 taattcaatgttggttgttttaaatatattaagacaagtagtgtgtaa 90764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 3449195 - 3448802
Alignment:
Q  19 gttttaggtccccaagttttttaagcaccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaa 118  Q
    ||||||| | ||| ||||||||| |  ||||| |||| ||||||||||| | |||||||||||||| ||| || |||||||| ||| || ||||||| ||    
T  3449195 gttttagattcccgagttttttaggtcccgtattaggtctcatatttttatgtttgaaaatattttcgtacgttaaattttgcaaatatgttcactcaaa 3449096  T
Q  119 actcaaacggtatgtaaatttggagttatagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnnc 218  Q
     |||||  |||||||||||   |||| |||||  | |||||||||||||| | ||||| |  ||||||||| |||||||||| |||||||||       |    
T  3449095 gctcaagtggtatgtaaatgaagagtcatagttcatgttgcaagttcgatctcaatgctaactattttattagttatttgaaccttaaattatttttgcc 3448996  T
Q  219 ctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaa-------------aagtaaaaaattaatttatat 305  Q
     ||| |||||||||||| |||||| || ||||||||||||||||||| |||||||||| |||||||             || ||||||||||||||||||    
T  3448995 ttcagattcctatcaatgtaattcaatatcggttgttctaaatatattaagacaagtaatgtgtaatcagagtttgtaaaaataaaaaattaatttatat 3448896  T
Q  306 tagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacgcacgc 402  Q
    | |||||||||||| ||||||  ||||| | || || |||||||||||||||||||| ||||||   | |||||||||||||||| | |||||||||    
T  3448895 ttgtatcatttcaaaattatttggttattttaagatatctaacaattggtaaataatatctata---ttaaatattattttcaacccgcacgcacgc 3448802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 78 - 393
Target Start/End: Complemental strand, 11671126 - 11670800
Alignment:
Q  78 atatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagtataggttgcaagttcgattttaatgca 177  Q
    ||||||| ||| |||||||||||| ||||||||||| |||| |||||  |||||||||||  ||||| || ||  | || ||||||||||||| |||||     
T  11671126 atattttcgtacgtcaaattttgttaacatattcacccgaagctcaagtggtatgtaaatgaggagtcatggttcatgtagcaagttcgatttcaatgct 11671027  T
Q  178 agttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtag 277  Q
    |  |||||||||||||||||||| ||| ||||        | ||| |||  ||||||| ||||| | ||||||||||||||||||||| | |||||||||    
T  11671026 aactattttattggttatttgaaccttgaattctttttgccttcagatttttatcaatgtaatttgttgtcggttgttctaaatatattaggacaagtag 11670927  T
Q  278 tgtgta---aaagt-----------aaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatg 363  Q
    ||||||   |||||           |||||| |||||||||||  ||||||||||||||||||  ||||| | || |||| || |||||| |||||||||    
T  11670926 tgtgtaatcaaagtttgtaaaagtaaaaaaaataatttatatttatatcatttcaatattattttgttattttaagatctatagcaattgataaataatg 11670827  T
Q  364 tctatatattaaaatattattttcaacaca 393  Q
    | ||||   | |||||||||||||||||||    
T  11670826 tttata---tgaaatattattttcaacaca 11670800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 46135876 - 46135719
Alignment:
Q  52 taggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagta 151  Q
    |||||||||||||||| |||||||||||||||| ||| ||||||||| |||||||  ||||||||||  ||||  |||||| ||||   |||| |||||     
T  46135876 taggcctcatatttttatctttgaaaatattttcgtacgtcaaatttcgtaaacacgttcactcgaagttcaagtggtatgcaaatgaagagtcatagtt 46135777  T
Q  152 taggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaatt 209  Q
     | |||| ||||||||||| ||| | || |||||||||||||||||||| ||||||||    
T  46135776 catgttgtaagttcgatttcaatactaggtattttattggttatttgaaccttaaatt 46135719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 218 - 399
Target Start/End: Original strand, 10833513 - 10833704
Alignment:
Q  218 cctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgta-------------aaagtaaaaaattaatttata 304  Q
    ||||| |||| ||||||| |||||||||||  |||||| ||||||||| |||||||||||||||||             ||||||||||| |||||||||    
T  10833513 cctcatattcttatcaatctaattcgatgttagttgttttaaatatattaagacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaaataatttata 10833612  T
Q  305 ttagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacgca 399  Q
    || |||| ||||||||||||||  ||||| | || || ||||||||||| |||||||||| ||||   | |||||||||||||||||||||||||    
T  10833613 tttgtattatttcaatattattttgttattttaagatttctaacaattgataaataatgtttata---ttaaatattattttcaacacacacgca 10833704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 141 - 389
Target Start/End: Original strand, 29292626 - 29292883
Alignment:
Q  141 gagttatagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataat 240  Q
    ||||||||||  | |||| ||||||||||| ||||  || |||||||||||||||||||| ||||||||        | ||  ||| ||||||||  |||    
T  29292626 gagttatagttcatgttgtaagttcgatttcaatgttaggtattttattggttatttgaaccttaaattctttttaccttctgatttctatcaatcgaat 29292725  T
Q  241 tcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaaaa-------gtaaaa-----aattaatttatattagtatcatttcaatattattca 328  Q
    | || |||||||||||||||||||| |||||| ||||||||||||        ||||||     |||||||||||||| |||||||||||||||||||      
T  29292726 tagacgtcggttgttctaaatatattaagacaggtagtgtgtaaataaaatttgtaaaagtaaaaattaatttatatttgtatcatttcaatattatttt 29292825  T
Q  329 gttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaa 389  Q
    ||||| | |  ||||||||||||||||||||||| ||||||   | |||||||||||||||    
T  29292826 gttattttatgatctctaacaattggtaaataatttctata---ttaaatattattttcaa 29292883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 3447435 - 3447248
Alignment:
Q  21 tttaggtccccaagttttttaagcaccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaac 120  Q
    |||||| |||| ||||||| |||| || || | || |||||||||  |||||| |||||||||||||| |||||||||| ||||||| ||||||| || |    
T  3447435 tttaggcccccgagtttttcaagccccatatttggtctcatattt--gtctttaaaaatatttttgtacgtcaaattttataaacatgttcactcaaagc 3447338  T
Q  121 tcaaacggtatgtaaatttggagttatagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaatta 210  Q
    ||||  |||||||||||   ||||  ||||  | |||||||||||||||| ||||  || |||||||||||||||||| | |||||||||    
T  3447337 tcaagtggtatgtaaatgaagagtcttagttcatgttgcaagttcgatttcaatgatagctattttattggttatttgtaccttaaatta 3447248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 280 - 505
Target Start/End: Original strand, 10162980 - 10163188
Alignment:
Q  280 tgtaaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaata 379  Q
    ||||||||||||||||||||||||||| || | ||||||||||||||  ||||| | || || |||||| |||||| |||||||| ||||   | |||||    
T  10162980 tgtaaaagtaaaaaattaatttatatttgttttatttcaatattattttgttattttaagatttctaactattggtgaataatgtttata---ttaaata 10163076  T
Q  380 ttattttcaacacacacgcacgcacgggtatgtgcctgcgcgcacacacatatatattacaaaggccatgcactaagggagttgactatatcaaaagagg 479  Q
    |||||||||| |||||| || ||||        ||  ||||||||||      |||||| ||||| || ||||||| |||||||| |||| | |||||||    
T  10163077 ttattttcaatacacacacatgcac--------gcgcgcgcgcacac------atattataaaggtcacgcactaacggagttgattatagcgaaagagg 10163162  T
Q  480 acatactctcacaatgtgacaaacca 505  Q
    | ||||||||||||||||||||||||    
T  10163163 atatactctcacaatgtgacaaacca 10163188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 75 - 278
Target Start/End: Complemental strand, 12180993 - 12180789
Alignment:
Q  75 aaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagtataggttgcaagttcgattttaat 174  Q
    ||||||||||||| ||||||||||| |||| || || ||||||| |||||  |||||| ||||  ||||| |||||  |  |||||||||| |||| |||    
T  12180993 aaaatatttttgtttgtcaaattttttaaaaatgtttactcgaagctcaagtggtatgcaaatgaggagtcatagttcattttgcaagttcaatttcaat 12180894  T
Q  175 gcaagttattttattggttatttgaatcttaaattannnnnnncctcaa-attcctatcaatataattcgatgtcggttgttctaaatatatcaagacaa 273  Q
    |  ||  ||||||||| ||||||||| ||||||||        |||    |||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  12180893 gttagccattttattgtttatttgaaccttaaattcttttttgcctttggattcctatcaatctaattcgatgtcggttgttctaaatatattaagacaa 12180794  T
Q  274 gtagt 278  Q
    |||||    
T  12180793 gtagt 12180789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 172 - 397
Target Start/End: Original strand, 36814105 - 36814340
Alignment:
Q  172 aatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagac 271  Q
    ||||| || ||||||||||||||||||||  |||||||        | ||| |||||||| ||| |||||| ||||||||||||||||||||||  ||||    
T  36814105 aatgctagctattttattggttatttgaactttaaattctttttgccttcagattcctattaatctaattcaatgtcggttgttctaaatatattcagac 36814204  T
Q  272 aagtagtgtgtaa-------------aagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaa 358  Q
     ||||||||||||             | |||||| | ||||||| ||| ||||||||| |||||||||   |||| | || |||||||||||||||||||    
T  36814205 gagtagtgtgtaatcaaagtttgtaaacgtaaaatactaatttacatttgtatcatttaaatattatttttttattttaagatctctaacaattggtaaa 36814304  T
Q  359 taatgtctatatattaaaatattattttcaacacacacg 397  Q
    |||||||||||   | |||||||||||||||||| ||||    
T  36814305 taatgtctata---ttaaatattattttcaacacgcacg 36814340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 280 - 402
Target Start/End: Complemental strand, 4033047 - 4032930
Alignment:
Q  280 tgtaaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaata 379  Q
    |||||| |||||||||||||||| ||| |||||||||||||||||||   |||| | || | ||||||||||||||||||||||    |||||| |||||    
T  4033047 tgtaaacgtaaaaaattaatttacatttgtatcatttcaatattatttttttattttaagacctctaacaattggtaaataatg----tatatt-aaata 4032953  T
Q  380 ttattttcaacacacacgcacgc 402  Q
    |||| |||||||| |||||||||    
T  4032952 ttatcttcaacacgcacgcacgc 4032930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 4033320 - 4033064
Alignment:
Q  17 aggttttaggtccccaagttttttaagcaccgtactaggcctcatatttttgtctttg-aaaatatttttgtatgtcaaattttgtaaacatattcactc 115  Q
    |||||||||| ||| || ||||||| |  ||||| ||||||||||||||||||||||| |||||||||| | | |||||||||||||||||| |||| ||    
T  4033320 aggttttaggcccctaatttttttaggttccgtattaggcctcatatttttgtctttggaaaatattttcgcacgtcaaattttgtaaacatgttcattc 4033221  T
Q  116 gaaactcaaacggtatgtaaatttggagttatagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnn 215  Q
     || || ||  ||||||||||   |||||  |||   | ||||||||||| |||| ||||| || |||||            ||| ||||||||          
T  4033220 aaagcttaagtggtatgtaaacgaggagtcgtaggtcatgttgcaagttctatttcaatgccagctattt------------gaaccttaaattcttttt 4033133  T
Q  216 nncctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaa 284  Q
      | ||| |||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  4033132 gccttcagattcatatcaatttaattcgatgtcggttattctaaatatattaagacaagtagtgtgtaa 4033064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 280 - 392
Target Start/End: Complemental strand, 11672519 - 11672410
Alignment:
Q  280 tgtaaaagtaaaaaat-taatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaat 378  Q
    |||||||||||||||  |||||||||||  | ||||| ||||||||||  ||||| | || ||||||||||||||||||||||||||||||   | ||||    
T  11672519 tgtaaaagtaaaaaaaataatttatatttatgtcatt-caatattattttgttattttaagatctctaacaattggtaaataatgtctata---tgaaat 11672424  T
Q  379 attattttcaacac 392  Q
    ||||||||||||||    
T  11672423 attattttcaacac 11672410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 19985726 - 19985653
Alignment:
Q  296 taatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatat 370  Q
    ||||||||||| ||||||||||||||||||||  |||| | || |||||||||||||||| ||||||||||||||    
T  19985726 taatttatatttgtatcatttcaatattattcttttattttaagatctctaacaattggt-aataatgtctatat 19985653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 21087712 - 21087834
Alignment:
Q  162 gttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaaat 261  Q
    ||||||||| ||||| || ||||||||||||||||| |  ||||||||        | | | |||||||||||| ||||||||| |||||||||||||||    
T  21087712 gttcgatttcaatgctagctattttattggttatttaatacttaaattctttttgcctttagattcctatcaatctaattcgatttcggttgttctaaat 21087811  T
Q  262 atatcaagacaagtagtgtgtaa 284  Q
    |||| ||||||  ||||||||||    
T  21087812 atattaagacatctagtgtgtaa 21087834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 36817298 - 36817362
Alignment:
Q  220 tcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaa 284  Q
    |||||||||||| ||| |||||| |||||||||||||||||||||| |||||  |||||||||||    
T  36817298 tcaaattcctattaatctaattcaatgtcggttgttctaaatatattaagacgggtagtgtgtaa 36817362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 12181597 - 12181479
Alignment:
Q  21 tttaggtccccaagttttttaagcaccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaac 120  Q
    |||||| |||| ||||||||| |   |||| |||||||| |||||||||||||||||||||||| ||| ||  || |||||||||||||||||| | | |    
T  12181597 tttaggcccccgagttttttaggtctcgtattaggcctcgtatttttgtctttgaaaatattttcgtacgttcaa-tttgtaaacatattcacttggagc 12181499  T
Q  121 tcaaacggtatgtaaatttg 140  Q
    ||||  |||||| |||||||    
T  12181498 tcaagtggtatgcaaatttg 12181479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 391
Target Start/End: Complemental strand, 13993744 - 13993527
Alignment:
Q  182 attttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtg 281  Q
    ||||||||||||||||| ||||||||||        | ||||||| |||| ||| ||||| |||||||||||||  |||||||| ||||||| |||||||    
T  13993744 attttattggttatttggatcttaaattctttttgccttcaaatttctataaatctaatttgatgtcggttgttagaaatatattaagacaaatagtgtg 13993645  T
Q  282 taa-------------aagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctat 368  Q
    |||             || |||||||||||||||||||  ||||| |||||||||||   ||||| | || |  |||||||||||||||||||||  |||    
T  13993644 taatcaaagtttgtaaaaataaaaaattaatttatatttatatcaattcaatattatcttgttatttcaaga--tctaacaattggtaaataatg--tat 13993549  T
Q  369 atattaaaatattattttcaaca 391  Q
    ||||| |||||||||||| ||||    
T  13993548 atatt-aaatattatttttaaca 13993527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 12181062 - 12180992
Alignment:
Q  280 tgtaaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaa 350  Q
    |||||||||||||| |||||||||||| |||| ||||||||||||||  ||||| | || |||||||||||    
T  12181062 tgtaaaagtaaaaatttaatttatatttgtattatttcaatattattttgttattttaagatctctaacaa 12180992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 367
Target Start/End: Complemental strand, 35238862 - 35238785
Alignment:
Q  290 aaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtcta 367  Q
    ||||||||||||||||| || ||||||||||||||||  ||||| | |   ||||||||||||| |||||||||||||    
T  35238862 aaaaattaatttatatttgtgtcatttcaatattattttgttattttatggtctctaacaattgataaataatgtcta 35238785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 20771178 - 20771237
Alignment:
Q  224 attcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaa 284  Q
    |||||||||||| ||||||||| ||||||||||| ||||||| |||||| |||||||||||    
T  20771178 attcctatcaatctaattcgatttcggttgttct-aatatattaagacatgtagtgtgtaa 20771237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 575
Target Start/End: Complemental strand, 11672147 - 11672084
Alignment:
Q  512 tctctaaatggacttaaaatatttctatttaaatttcactttagacctaaaaatacattgggcc 575  Q
    |||||||||| ||||||||  | |||||||||||||| |||||| |||||||||| ||||||||    
T  11672147 tctctaaatgcacttaaaaggtctctatttaaatttcgctttaggcctaaaaatatattgggcc 11672084  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 11672582 - 11672528
Alignment:
Q  230 atcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaa 284  Q
    |||||| ||||||||||||||||||||| ||||||| | ||||| ||||||||||    
T  11672582 atcaatctaattcgatgtcggttgttctgaatatattaggacaaatagtgtgtaa 11672528  T

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Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 394
Target Start/End: Complemental strand, 19983500 - 19983409
Alignment:
Q  301 tatattagtatcatttcaatattattcagttatataaaaa--tctctaacaattggtaaataatgtctatatattaaaatattattttcaacacac 394  Q
    |||||| ||||||||||||||||||||  |||| | || |  ||||||||||||||| |||||||||||||   | ||||||||||||||||||||    
T  19983500 tatatttgtatcatttcaatattattcttttattttaagatctctctaacaattggt-aataatgtctata---ttaaatattattttcaacacac 19983409  T

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Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 370
Target Start/End: Complemental strand, 19984972 - 19984903
Alignment:
Q  300 ttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatat 370  Q
    ||||||| |||||||||||||||||| |  |||| | || |||||||||||||||| ||||||||||||||    
T  19984972 ttatatttgtatcatttcaatattatacttttattttaagatctctaacaattggt-aataatgtctatat 19984903  T

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Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 505
Target Start/End: Complemental strand, 11672351 - 11672265
Alignment:
Q  417 gcgcgcacacacatatatattacaaaggccatgcactaagggagttgactatatcaaaagaggacatactctcacaatgtgacaaacca 505  Q
    |||| ||||||||||||||||| ||||| ||  || ||| |||||||| |||| | |||||||| ||||||| |||||||||| |||||    
T  11672351 gcgcacacacacatatatattaaaaaggtca--cattaacggagttgattatagcgaaagaggatatactcttacaatgtgactaacca 11672265  T

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Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 505
Target Start/End: Complemental strand, 3448789 - 3448706
Alignment:
Q  422 cacacacatatatattacaaaggccatgcactaagggagttgactatatcaaaagaggacatactctcacaatgtgacaaacca 505  Q
    ||||||||||||||||| ||||| ||  |||||| | | |||| ||||   |||||||| ||| ||||||||||||||||||||    
T  3448789 cacacacatatatattaaaaaggtcacacactaacgaaattgattatagacaaagaggatataatctcacaatgtgacaaacca 3448706  T

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Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 284
Target Start/End: Complemental strand, 12181481 - 12181353
Alignment:
Q  156 ttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgtt 255  Q
    ||||||||||||||  | ||| |  |||||||||| ||||||||| ||||||||        | ||| |||| |||| || |||||| || | |||||||    
T  12181481 ttgcaagttcgattacagtgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcgtatcgatctaattcaattttggttgtt 12181382  T
Q  256 ctaaatatatcaagacaagtagtgtgtaa 284  Q
    |||||||||| ||||||||| ||||||||    
T  12181381 ctaaatatattaagacaagtggtgtgtaa 12181353  T

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Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 579
Target Start/End: Complemental strand, 35238610 - 35238543
Alignment:
Q  512 tctctaaatggacttaaaatatttctatttaaatttcactttagacctaaaaatacattgggccgacc 579  Q
    |||||||| | ||||||||||  | |||||||||||| |||||  | |||||||||||||||||||||    
T  35238610 tctctaaacgcacttaaaatacatatatttaaatttcgctttaagcttaaaaatacattgggccgacc 35238543  T

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Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 419 - 501
Target Start/End: Original strand, 10833706 - 10833788
Alignment:
Q  419 gcgcacacacatatatattacaaaggccatgcactaagggagttgactatatcaaaagaggacatactctcacaatgtgacaa 501  Q
    ||||||| ||| |||||||| ||||| || ||||||| |||||||| | ||   |||||||||||||||| | ||||||||||    
T  10833706 gcgcacatacacatatattaaaaaggtcacgcactaacggagttgattttagtgaaagaggacatactcttataatgtgacaa 10833788  T

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Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 13995591 - 13995656
Alignment:
Q  58 tcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaa 124  Q
    |||||||||| | |||||||||||||| ||| |||||| ||| ||||||| |||||||||| |||||    
T  13995591 tcatatttttatttttgaaaatattttagtacgtcaaa-tttataaacatgttcactcgaatctcaa 13995656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 14003705 - 14003770
Alignment:
Q  58 tcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaa 124  Q
    |||||||||| | |||||||||||||| ||| |||||| ||| ||||||| |||||||||| |||||    
T  14003705 tcatatttttatttttgaaaatattttagtacgtcaaa-tttataaacatgttcactcgaatctcaa 14003770  T

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Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 395
Target Start/End: Complemental strand, 19984253 - 19984145
Alignment:
Q  283 aaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatatta 382  Q
    ||||| |||| | ||||||||||| |||||||||||| |||||||  |||  | || |||||||| ||||||| ||||| |||||||   | ||||||||    
T  19984253 aaaagaaaaataataatttatatttgtatcatttcaaaattattcttttaatttaagatctctaagaattggt-aataaagtctata---ttaaatatta 19984158  T
Q  383 ttttcaacacaca 395  Q
    |||||||| ||||    
T  19984157 ttttcaacgcaca 19984145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 29263490 - 29263544
Alignment:
Q  155 gttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaatt 209  Q
    |||| ||||||||||| ||||  || |||||||||||||||||||| ||||||||    
T  29263490 gttgtaagttcgatttcaatgttaggtattttattggttatttgaaccttaaatt 29263544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 367
Target Start/End: Original strand, 36817378 - 36817459
Alignment:
Q  287 gtaaaaaattaatttatattagtatcatttcaatattattcagtt-atataaaaatctctaacaattggtaaataatgtcta 367  Q
    ||||| |||||||||| ||| |||||| ||||||||| || | || || | || |||||||||||| |||||||||||||||    
T  36817378 gtaaataattaatttacatttgtatcaattcaatattttttattttattttaagatctctaacaatcggtaaataatgtcta 36817459  T

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Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 11674006 - 11673923
Alignment:
Q  286 agtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatat 370  Q
    ||||||| ||||||||||||| |||||||  |||| |||||  ||||| | || ||| |||||| |||||||||||||| |||||    
T  11674006 agtaaaatattaatttatatttgtatcataccaatcttattttgttattttaagatc-ctaacagttggtaaataatgtttatat 11673923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 31037646 - 31037706
Alignment:
Q  52 taggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattca 112  Q
    |||||||||| |||||| |||| || |||||| || |||||| || |||||||||||||||    
T  31037646 taggcctcatctttttggctttaaatatatttctgcatgtcacatattgtaaacatattca 31037706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 52 - 389
Target Start/End: Complemental strand, 41397882 - 41397530
Alignment:
Q  52 taggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaa-catattcactcgaaactcaaacggtatgtaaatttggagttatagt 150  Q
    |||||| |||||||||||||||||||||||||| ||| ||||||||||| ||| ||| |||||||||| |||||   |||||||||   ||||| ||| |    
T  41397882 taggccccatatttttgtctttgaaaatattttcgtacgtcaaattttgcaaaacatgttcactcgaagctcaagtcgtatgtaaagaaggagtcataat 41397783  T
Q  151 ataggttgcaagttcgattttaatgcaagttattttattggttatttgaatc----ttaaattannnnnnncctcaaattcctatcaatataattcgatg 246  Q
      | |||| ||||||||||| ||||| || ||||||||||||||  |||| |    |||||||        | ||| |||||||||||| ||||||||||    
T  41397782 tcatgttgaaagttcgatttcaatgctagctattttattggttacatgaaccatacttaaattctttttgccttcagattcctatcaatctaattcgatg 41397683  T
Q  247 tcggttgttctaaatatatcaagacaagtagtgt-------------gtaaaagtaaaaaattaatttatattagtatcatttcaatattattcagttat 333  Q
    ||||||||||||||||||| ||||||||||||||             |||||||| ||| ||||||||||||| |||| ||||||||||||||  |||||    
T  41397682 tcggttgttctaaatatattaagacaagtagtgtgtaaccaaattttgtaaaagttaaacattaatttatatttgtatgatttcaatattattttgttat 41397583  T
Q  334 ataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaa 389  Q
     | |  ||||||||||||||||||||||||||||||   | |||||||||||||||    
T  41397582 tttatgatctctaacaattggtaaataatgtctata---ttaaatattattttcaa 41397530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 52 - 284
Target Start/End: Complemental strand, 48572888 - 48572655
Alignment:
Q  52 taggcctcatatttttgtctttg-aaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagt 150  Q
    |||| ||| |||||||||||||| |||||||||||||| |||||||||||||||  | |||||||||| |||||  |||||||||||  |||||  ||||    
T  48572888 taggtctcgtatttttgtctttggaaaatatttttgtacgtcaaattttgtaaatgtgttcactcgaagctcaagtggtatgtaaatgaggagtcgtagt 48572789  T
Q  151 ataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcgg 250  Q
      | ||||||||||| |||||||||| |  |||||||||||||||||||| ||||||||        | ||  |||||||||||| ||||| |||| |||    
T  48572788 tcatgttgcaagttcaattttaatgctaactattttattggttatttgaaccttaaattttttttgtcttctgattcctatcaatctaatttgatgccgg 48572689  T
Q  251 ttgttctaaatatatcaagacaagtagtgtgtaa 284  Q
    ||||||||||||||| ||||||| ||||||||||    
T  48572688 ttgttctaaatatattaagacaattagtgtgtaa 48572655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 21 - 402
Target Start/End: Complemental strand, 22130714 - 22130323
Alignment:
Q  21 tttaggtccccaagttttttaagcaccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaac 120  Q
    |||||| |||||||||||||| ||  |||| | ||||||||||||||| |||||||||||||||   | || ||||||||||||||  |||| |||||      
T  22130714 tttaggcccccaagttttttaggcttcgtattcggcctcatatttttgactttgaaaatatttt---acgttaaattttgtaaacacgttcattcgaagt 22130618  T
Q  121 tcaaacggtatgtaaatttggagttatagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncc- 219  Q
    ||||  ||||||||||   ||||| ||| |  | |||||||||||||||| ||| | || ||| |||||| ||||||||| ||| ||||               
T  22130617 tcaagtggtatgtaaacgaggagtcatacttcatgttgcaagttcgatttcaattctagctatattattgattatttgaacctttaattttttgttttgc 22130518  T
Q  220 --tcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagta-------------gtgtgtaaaagtaaaaaattaatttata 304  Q
      ||| |||||||||||| |||||||||||||||||||  |||||||| ||||||||||             || |||||||||||||||||||||||||    
T  22130517 attcagattcctatcaatctaattcgatgtcggttgtttgaaatatattaagacaagtaacatgtaatcaaagtttgtaaaagtaaaaaattaatttata 22130418  T
Q  305 ttagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacgcacgc 402  Q
    ||  ||||||||||||||||||  ||||| | || |||| ||||||||||||||||||||||||    | |||||||||||||||||  |||||||||    
T  22130417 tttatatcatttcaatattattttgttattttaagatctataacaattggtaaataatgtctat---gttaaatattattttcaacatgcacgcacgc 22130323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 21 - 402
Target Start/End: Original strand, 40500392 - 40500783
Alignment:
Q  21 tttaggtccccaagttttttaagcaccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaac 120  Q
    |||||| |||||||||||||| ||  |||| | ||||||||||||||| |||||||||||||||   | || ||||||||||||||  |||| |||||      
T  40500392 tttaggcccccaagttttttaggcttcgtattcggcctcatatttttgactttgaaaatatttt---acgttaaattttgtaaacacgttcattcgaagt 40500488  T
Q  121 tcaaacggtatgtaaatttggagttatagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncc- 219  Q
    ||||  ||||||||||   ||||| ||| |  | |||||||||||||||| ||| | || ||| |||||| ||||||||| ||| ||||               
T  40500489 tcaagtggtatgtaaacgaggagtcatacttcatgttgcaagttcgatttcaattctagctatattattgattatttgaacctttaattttttgttttgc 40500588  T
Q  220 --tcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagta-------------gtgtgtaaaagtaaaaaattaatttata 304  Q
      ||| |||||||||||| |||||||||||||||||||  |||||||| ||||||||||             || |||||||||||||||||||||||||    
T  40500589 attcagattcctatcaatctaattcgatgtcggttgtttgaaatatattaagacaagtaacatgtaatcaaagtttgtaaaagtaaaaaattaatttata 40500688  T
Q  305 ttagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacgcacgc 402  Q
    ||  ||||||||||||||||||  ||||| | || |||| ||||||||||||||||||||||||    | |||||||||||||||||  |||||||||    
T  40500689 tttatatcatttcaatattattttgttattttaagatctataacaattggtaaataatgtctat---gttaaatattattttcaacatgcacgcacgc 40500783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 26199072 - 26199162
Alignment:
Q  280 tgtaaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatat 370  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||  ||||| | |  |||||||||||||||||||||||||||||||    
T  26199072 tgtaaaagtaaaacattaatttatatttgtatcatttcaatattattttgttattttatgatctctaacaattggtaaataatgtctatat 26199162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 146 - 370
Target Start/End: Complemental strand, 30879542 - 30879306
Alignment:
Q  146 atagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgat 245  Q
    ||||| || |||||||||||||||| ||||| || ||||| ||||||||||| || ||||||||        | |||||||  ||||||| |||||  |     
T  30879542 atagtttatgttgcaagttcgatttcaatgctagctattt-attggttatttaaaccttaaattctttttgccttcaaattgttatcaatctaatttaaa 30879444  T
Q  246 gtcggttgttctaaatatatcaagacaagtagtgtgtaa-------------aagtaaaaaattaatttatattagtatcatttcaatattattcagtta 332  Q
    |||||||||||||||||||| |||||||||| |||||||             ||||||||||||||||||||||  |||||||| |||||||||   | |    
T  30879443 gtcggttgttctaaatatattaagacaagtaatgtgtaataaaaatttgtaaaagtaaaaaattaatttatatttttatcattttaatattattttataa 30879344  T
Q  333 tataaaaatctctaacaattggtaaataatgtctatat 370  Q
    | | || |||||||||||||| |||||||||| |||||    
T  30879343 ttttaatatctctaacaattgataaataatgtttatat 30879306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 156 - 326
Target Start/End: Complemental strand, 22112308 - 22112125
Alignment:
Q  156 ttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgtt 255  Q
    |||||||||||||||||||   | |||| ||||| |||||||||| ||||||||        | | | |||| ||| ||| |||||||||||||||||||    
T  22112308 ttgcaagttcgattttaattttaattatattatttgttatttgaaccttaaattctttttacctttagattcatattaatctaattcgatgtcggttgtt 22112209  T
Q  256 ctaaatatatcaagacaagtagtgtgtaa-------------aagtaaaaaattaatttatattagtatcatttcaatattatt 326  Q
    |||||||||| |||| || ||||||||||             |||||||||||||||||||||| | |||||||||||||||||    
T  22112208 ctaaatatattaagataaatagtgtgtaattaaagtttgtaaaagtaaaaaattaatttatatttgaatcatttcaatattatt 22112125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 156 - 326
Target Start/End: Original strand, 40494143 - 40494326
Alignment:
Q  156 ttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgtt 255  Q
    |||||||||||||||||||   | |||| ||||| |||||||||| ||||||||        | | | |||| ||| ||| |||||||||||||||||||    
T  40494143 ttgcaagttcgattttaattttaattatattatttgttatttgaaccttaaattctttttacctttagattcatattaatctaattcgatgtcggttgtt 40494242  T
Q  256 ctaaatatatcaagacaagtagtgtgta-------------aaagtaaaaaattaatttatattagtatcatttcaatattatt 326  Q
    |||||||||| |||| || |||||||||             ||||||||||||||||||||||| | |||||||||||||||||    
T  40494243 ctaaatatattaagataaatagtgtgtaattaaagtttgtaaaagtaaaaaattaatttatatttgaatcatttcaatattatt 40494326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 405
Target Start/End: Complemental strand, 48015228 - 48015142
Alignment:
Q  316 tcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacgcacgcacg 405  Q
    |||||||||||  ||||  | || ||||||||||||||||||||||||  |||||||| | |||||||||||||||  ||||||||||||    
T  48015228 tcaatattattttgttaatttaagatctctaacaattggtaaataatg--tatatatt-atatattattttcaacatgcacgcacgcacg 48015142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 26198901 - 26198962
Alignment:
Q  53 aggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcact 114  Q
    ||||||||||||||| |||||||||||||||  ||| ||||||||| || ||||| ||||||    
T  26198901 aggcctcatatttttatctttgaaaatatttccgtacgtcaaatttcgttaacatgttcact 26198962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 582
Target Start/End: Complemental strand, 33542038 - 33541966
Alignment:
Q  509 ttatctctaaatggacttaaaatatttctatttaaatttcactttagacctaaaaatacattgggccgaccctg 582  Q
    |||||||||||   ||||||||||| |||||||||||||| ||||||| |||||||||||| || ||| |||||    
T  33542038 ttatctctaaacacacttaaaatatctctatttaaatttcgctttaga-ctaaaaatacatcggaccggccctg 33541966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 340 - 392
Target Start/End: Complemental strand, 48013493 - 48013444
Alignment:
Q  340 atctctaacaattggtaaataatgtctatatattaaaatattattttcaacac 392  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  48013493 atctctaacaattggtaaataatg--tatatatt-aaatattattttcaacac 48013444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 3042923 - 3042882
Alignment:
Q  349 aattggtaaataatgtctatatattaaaatattattttcaaca 391  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  3042923 aattggtaaataatatctatatatt-aaatattattttcaaca 3042882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 573
Target Start/End: Original strand, 17868469 - 17868518
Alignment:
Q  524 cttaaaatatttctatttaaatttcactttagacctaaaaatacattggg 573  Q
    ||||||||| ||||||||||||| | |||||| |||| ||||||||||||    
T  17868469 cttaaaatacttctatttaaattccgctttaggcctataaatacattggg 17868518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 46 - 370
Target Start/End: Original strand, 4897422 - 4897757
Alignment:
Q  46 ccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagtt 145  Q
    ||||| |||||||||||||||| | ||||||||||| || | | || |||||||||| |||| |||| |||||| ||||  ||||||||||    ||||     
T  4897422 ccgtattaggcctcatatttttatttttgaaaatatattcgcacgtgaaattttgtagacatgttcaatcgaaattcaagtggtatgtaaaaaatgagtc 4897521  T
Q  146 atagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgat 245  Q
    |||    |  ||||||||||||||||| ||| || |||||||| ||||||||||||||||||||        | |||||||| ||||||| |||||||||    
T  4897522 ataactca--ttgcaagttcgattttagtgcgagctattttataggttatttgaatcttaaattttgtttgccttcaaattcatatcaatctaattcgat 4897619  T
Q  246 gtcggttgttctaaatatatcaagacaagtagtgtgta-------------aaagtaaaaaattaatttatattagtatcatttcaatattattcagtta 332  Q
    ||||||| |||||||||||| |||||||||||||||||             ||||||| ||||||||||||||| ||||||||| |||||||||  ||||    
T  4897620 gtcggttattctaaatatattaagacaagtagtgtgtaatcaaagtttgtaaaagtaagaaattaatttatatttgtatcatttgaatattattttgtta 4897719  T
Q  333 tataaaaatctctaacaattggtaaataatgtctatat 370  Q
    | |  |||| |||||||||||||||| |||||||||||    
T  4897720 tttttaaatttctaacaattggtaaacaatgtctatat 4897757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 37 - 370
Target Start/End: Original strand, 40603835 - 40604182
Alignment:
Q  37 ttttaagcaccgtactaggcctcatatttttgtctttgaaaatattttt-gtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaa 135  Q
    ||||| || ||||| |||||||||||||||  ||| ||||||||||||| ||| || ||||||| |||| || ||||||||||  ||||  | ||||       
T  40603835 ttttaggccccgtattaggcctcatattttaatctatgaaaatattttttgtacgttaaattttataaatatgttcactcgaagttcaagtgatatgctg 40603934  T
Q  136 atttggagttatagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaat 235  Q
    ||   || | ||||| || |||| |||||| ||||  |||  || ||||||||||||||||| || ||||||||        | ||||||| ||||||||    
T  40603935 atgaagaatcatagtttatgttgtaagttccatttcgatgttaggtattttattggttatttaaaccttaaattctttttatcttcaaattactatcaat 40604034  T
Q  236 ataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgta-------------aaagtaaaaaattaatttatattagtatcatttcaatat 322  Q
      | |||||||||||||||||||||||||| ||||||| |||||||||             ||||||||||||||||||||||| |||||||||||||||    
T  40604035 cgatttcgatgtcggttgttctaaatatattaagacaattagtgtgtaattaaaatttgtaaaagtaaaaaattaatttatatttgtatcatttcaatat 40604134  T
Q  323 tattcagttatataaaaatctctaacaattggtaaataatgtctatat 370  Q
    ||||  ||||| | | |||||||||||||||||| ||||| |||||||    
T  40604135 tattttgttattttataatctctaacaattggtagataatatctatat 40604182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 78 - 392
Target Start/End: Original strand, 42430749 - 42431077
Alignment:
Q  78 atatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtat----gtaaatttggagttatagtataggttgcaagttcgattttaa 173  Q
    ||||||| ||| |||||||||||||||||| |||||| ||| || ||  |||||    ||||||  ||| | |||||  | || |||| |||||||| ||    
T  42430749 atattttcgtaggtcaaattttgtaaacatgttcacttgaagctgaagtggtatatatgtaaatgaggaatcatagttcatgtagcaaattcgatttcaa 42430848  T
Q  174 tgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaa 273  Q
    ||| | ||||||||||| ||||||||| ||| ||||        | ||| ||| |||||||| ||||||||| ||||||||||||||||||| | |||||    
T  42430849 tgctaattattttattgattatttgaaccttgaattctttgtgccttcagatttctatcaatctaattcgatttcggttgttctaaatatattaggacaa 42430948  T
Q  274 gtagtgtgtaa-------------aagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaata 360  Q
    |||||||||||             ||||| |||||||||||||||| |||| ||||||||||||||  ||||| | || |||||||||||||||||||||    
T  42430949 gtagtgtgtaatcaaagtttgtaaaagtacaaaattaatttatatttgtattatttcaatattattttgttattttaatatctctaacaattggtaaata 42431048  T
Q  361 atgtctatatattaaaatattattttcaacac 392  Q
    |  | |||||||| |||| |||||||||||||    
T  42431049 a--tatatatatt-aaattttattttcaacac 42431077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 46 - 284
Target Start/End: Original strand, 36761719 - 36761958
Alignment:
Q  46 ccgtactaggcctcatatttttgtctttgaaaatattttt-gtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagt 144  Q
    ||||| ||| |||| ||||||||||||||||||||||||| ||| |||||||||||||||| | |||| |||||  ||||| |||||| ||||  |||||    
T  36761719 ccgtattagacctcgtatttttgtctttgaaaatatttttcgtacgtcaaattttgtaaacttgttcattcgaagttcaaatggtatgcaaatgaggagt 36761818  T
Q  145 tatagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcga 244  Q
     ||     | |||| ||||| ||||| ||||| || ||||||||||||||||||||  |||||||          ||| ||||||||||||  |||||||    
T  36761819 cattactcatgttgtaagtttgatttcaatgctagctattttattggttatttgaaatttaaattctttttgcgttcagattcctatcaatcgaattcga 36761918  T
Q  245 tgtcggttgttctaaatatatcaagacaagtagtgtgtaa 284  Q
    | ||||||||||||| ||||| |||| |||||||||||||    
T  36761919 tatcggttgttctaattatattaagataagtagtgtgtaa 36761958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 78 - 393
Target Start/End: Complemental strand, 22498037 - 22497712
Alignment:
Q  78 atatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagtataggttgcaagttcgattttaatgca 177  Q
    ||||||||||||||||||||||||||| |  |||||||||| || ||  |||||||||||  ||||| |||||  | || ||||||| |||||  ||       
T  22498037 atatttttgtatgtcaaattttgtaaatacgttcactcgaagcttaagtggtatgtaaatgaggagtcatagttcatgtagcaagtttgatttacataat 22497938  T
Q  178 agttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtag 277  Q
    |  |||||||||||||||||||| ||| ||||        | ||||||| |||||||| || ||||||||| |||||||||||||||| |||||||||||    
T  22497937 aactattttattggttatttgaaccttgaattctttttgccttcaaatttctatcaatctagttcgatgtcagttgttctaaatatattaagacaagtag 22497838  T
Q  278 tgtgt-------------aaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgt 364  Q
    | |||             ||||| |||||||||||||| |||  ||||||| ||||||||||  ||||  | || |||||||||||||| | ||||||||    
T  22497837 tctgtaatcaaagtttaaaaaaggaaaaaattaatttacatttatatcattacaatattattttgttacttgaagatctctaacaattgatcaataatgt 22497738  T
Q  365 ctatatattaaaatattattttcaacaca 393  Q
    | |||   | |||||||||||||||||||    
T  22497737 caata---ttaaatattattttcaacaca 22497712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 49408661 - 49408809
Alignment:
Q  52 taggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagta 151  Q
    |||||||||||||| |||||||  ||||||||| |||||||||||||| ||||||| |||| |||||||||||  |||||||||||  ||||| ||| |     
T  49408661 taggcctcatatttgtgtctttagaaatattttcgtatgtcaaattttctaaacatgttcattcgaaactcaagtggtatgtaaatgaggagtcataatt 49408760  T
Q  152 taggttgcaagttcgattttaatgcaagttattttattggttatttgaa 200  Q
    ||  ||| ||||||||||| ||||| || ||||||||| |||| |||||    
T  49408761 tatattgtaagttcgatttcaatgctagctattttattagttagttgaa 49408809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 296 - 405
Target Start/End: Complemental strand, 4044790 - 4044684
Alignment:
Q  296 taatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacacaca 395  Q
    ||||||||||| |||||||||||||||||||  |||||   || |||||||||||||| |||||||| ||||||   | |||||||||||||||||||||    
T  4044790 taatttatatttgtatcatttcaatattattttgttattataagatctctaacaattgataaataatatctata---ttaaatattattttcaacacaca 4044694  T
Q  396 cgcacgcacg 405  Q
    |||| |||||    
T  4044693 cgcatgcacg 4044684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 155 - 280
Target Start/End: Original strand, 49058293 - 49058418
Alignment:
Q  155 gttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgt 254  Q
    |||||||||||||||||||||  || ||||||||||||||||| ||  |||||||        | ||| ||   | ||||| |||||||||||| |||||    
T  49058293 gttgcaagttcgattttaatgttagctattttattggttattttaacattaaattctttttgccttcagatatttgtcaatctaattcgatgtcagttgt 49058392  T
Q  255 tctaaatatatcaagacaagtagtgt 280  Q
    ||||||||||| ||||||||||||||    
T  49058393 tctaaatatattaagacaagtagtgt 49058418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 423 - 505
Target Start/End: Complemental strand, 22497660 - 22497578
Alignment:
Q  423 acacacatatatattacaaaggccatgcactaagggagttgactatatcaaaagaggacatactctcacaatgtgacaaacca 505  Q
    ||||||| | |||||| || || |||||| ||| |||||||| |||| |||||||||| ||||||||||||| ||||||||||    
T  22497660 acacacacacatattaaaatggtcatgcattaacggagttgattatagcaaaagaggatatactctcacaatatgacaaacca 22497578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 3071653 - 3071593
Alignment:
Q  224 attcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaa 284  Q
    |||||||||||| ||||| ||||||| ||| ||||||||||| |||||||||| |||||||    
T  3071653 attcctatcaatctaatttgatgtcgattgctctaaatatattaagacaagtaatgtgtaa 3071593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 326
Target Start/End: Original strand, 49408835 - 49408945
Alignment:
Q  229 tatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtg-------------tgtaaaagtaaaaaattaatttatattagtatcatt 315  Q
    ||||||| ||||||||||||||||||||||||||||| |||| ||  ||||             ||||||| |||||||||||||||||||  |||||||    
T  49408835 tatcaatctaattcgatgtcggttgttctaaatatattaagaaaatgagtgtataatcaaagtttgtaaaaataaaaaattaatttatatttatatcatt 49408934  T
Q  316 tcaatattatt 326  Q
    |||||||||||    
T  49408935 tcaatattatt 49408945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 32011134 - 32011179
Alignment:
Q  281 gtaaaagtaaaaaattaatttatattagtatcatttcaatattatt 326  Q
    |||||||||||||||||||||||||| |||| | ||||||||||||    
T  32011134 gtaaaagtaaaaaattaatttatatttgtattagttcaatattatt 32011179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 505
Target Start/End: Complemental strand, 3071128 - 3071052
Alignment:
Q  429 atatatattacaaaggccatgcactaagggagttgactatatcaaaagaggacatactctcacaatgtgacaaacca 505  Q
    |||||||||| ||||| || ||| ||| | |||||| |||| |||||||  | ||||||||||||||||||||||||    
T  3071128 atatatattagaaaggtcacgcattaaagaagttgattataacaaaagattatatactctcacaatgtgacaaacca 3071052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 391
Target Start/End: Original strand, 42181072 - 42181163
Alignment:
Q  297 aatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaaca 391  Q
    |||||||||| |||| || |||||||||||  ||||| | |  |||||||||||||| ||||||| |||||||   | |||||||||||||||||    
T  42181072 aatttatatttgtataatctcaatattattttgttattttatgatctctaacaattgataaataacgtctata---ttaaatattattttcaaca 42181163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 49058174 - 49058230
Alignment:
Q  17 aggttttaggtccccaagttttttaagcaccgtactaggcctcatatttttgtcttt 73  Q
    |||||||||| |||||||||||| |||  ||||| ||||| ||||||||||||||||    
T  49058174 aggttttaggcccccaagtttttcaagtcccgtattaggcatcatatttttgtcttt 49058230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 36761975 - 36762013
Alignment:
Q  288 taaaaaattaatttatattagtatcatttcaatattatt 326  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  36761975 taaaaaactaatttatatttgtatcatttcaatattatt 36762013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 38705650 - 38705704
Alignment:
Q  155 gttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaatt 209  Q
    ||||||| ||| |||| ||||| |  |||||||||||||||||||||||||||||    
T  38705650 gttgcaaattcaatttcaatgctaactattttattggttatttgaatcttaaatt 38705704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 32011223 - 32011270
Alignment:
Q  343 tctaacaattggtaaataatgtctatatattaaaatattattttcaacaca 393  Q
    |||||||||||||||||||||| ||||   | |||||||||||||||||||    
T  32011223 tctaacaattggtaaataatgtttata---ttaaatattattttcaacaca 32011270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 49058452 - 49058532
Alignment:
Q  422 cacacacatatatattacaaaggccatgcactaagggagttgactatatcaaaagaggacatactctcacaatgtgacaaa 502  Q
    ||||||||||||||||| |||   || ||| ||| | | |||| |||| ||||||| || |||||||||||||||||||||    
T  49058452 cacacacatatatattaaaaaaatcacgcattaatgaaattgattataacaaaagaagatatactctcacaatgtgacaaa 49058532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 60 - 370
Target Start/End: Complemental strand, 1520591 - 1520268
Alignment:
Q  60 atatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagtataggttgc 159  Q
    |||||||| | |||||||||||||||||| ||||||||| | |||||| ||||||||||  | ||  |||||| ||||   |||||||||| || |||      
T  1520591 atatttttatgtttgaaaatatttttgtacgtcaaatttcgaaaacatgttcactcgaagtttaagtggtatgcaaataaagagttatagtttatgttat 1520492  T
Q  160 aagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaa 259  Q
    ||||||||||||||||  || |||||||||||||||||||| |||| |||        | | | | ||||||||||  ||||||||| ||||||||||||    
T  1520491 aagttcgattttaatgttaggtattttattggttatttgaaccttagattccttttaccttaagactcctatcaatcgaattcgatgacggttgttctaa 1520392  T
Q  260 atatatcaagacaagtagtgtgt-------------aaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctcta 346  Q
    |||||| |||||||||| |||||             |||||||||||||||||||||||| |||||||||||||||||||  ||||| | |  |||||||    
T  1520391 atatattaagacaagtaatgtgtgattaaaatttgtaaaagtaaaaaattaatttatatttgtatcatttcaatattattttgttattttatgatctcta 1520292  T
Q  347 acaattggtaaataatgtctatat 370  Q
    ||||||  ||||||||||||||||    
T  1520291 acaattaataaataatgtctatat 1520268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 229 - 364
Target Start/End: Complemental strand, 35026166 - 35026018
Alignment:
Q  229 tatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaa-------------aagtaaaaaattaatttatattagtatcatt 315  Q
    ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||             |||||||||||||||||||||| ||||||||    
T  35026166 tatcaatctaattcgatgtcggttgttctaaatatattaggacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcatt 35026067  T
Q  316 tcaatattattcagttatataaaaatctctaacaattggtaaataatgt 364  Q
    |||||||||||  ||||| | || ||||||||||||| |||||||||||    
T  35026066 tcaatattattttgttattttaagatctctaacaattagtaaataatgt 35026018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 280 - 402
Target Start/End: Complemental strand, 2512646 - 2512527
Alignment:
Q  280 tgtaaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaata 379  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||  ||||| | |  || | ||||||||| |||||||||||||||   | |||||    
T  2512646 tgtaaaagtaaaaaattaatttatatttgtatcattttaatattattttgttattttatgatttttaacaattgataaataatgtctata---ttaaata 2512550  T
Q  380 ttattttcaacacacacgcacgc 402  Q
    ||||||||||||| |||||||||    
T  2512549 ttattttcaacacgcacgcacgc 2512527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 7300334 - 7300268
Alignment:
Q  218 cctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaa 284  Q
    ||||| |||||||||||| ||||||||||| | ||||| ||||||||| ||||||||||||||||||    
T  7300334 cctcatattcctatcaatctaattcgatgttgattgttttaaatatattaagacaagtagtgtgtaa 7300268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 7300630 - 7300526
Alignment:
Q  298 atttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacg 397  Q
    ||||||||| |||| ||||||||||||||  ||||| | || || | |||||||||||||||| ||||||||   | ||||||||||||||||||||||     
T  7300630 atttatatttgtattatttcaatattattttgttattttaagatttttaacaattggtaaatagtgtctata---ttaaatattattttcaacacacaca 7300534  T
Q  398 cacgcacg 405  Q
    ||| ||||    
T  7300533 cacacacg 7300526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 434 - 505
Target Start/End: Complemental strand, 7295516 - 7295445
Alignment:
Q  434 tattacaaaggccatgcactaagggagttgactatatcaaaagaggacatactctcacaatgtgacaaacca 505  Q
    ||||| ||||| || ||||||| |||||||| |||| | |||||||| |||||| |||||||||||||||||    
T  7295516 tattaaaaaggtcacgcactaacggagttgattatagcgaaagaggatatactcacacaatgtgacaaacca 7295445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 7295584 - 7295538
Alignment:
Q  346 aacaattggtaaataatgtctatatattaaaatattattttcaacacac 394  Q
    ||||||||||||||||||| |||||  ||||||||||||||||||||||    
T  7295584 aacaattggtaaataatgtttatat--taaaatattattttcaacacac 7295538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 7305726 - 7305348
Alignment:
Q  20 ttttaggtccccaagttttttaagcaccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaa 119  Q
    |||||||  ||| |||||||||||| ||||  |||||||||||||||| | ||||||||||||||  || |||||| || ||||||||  || ||||||     
T  7305726 ttttaggctcccgagttttttaagccccgtgataggcctcatatttttatttttgaaaatattttcatacgtcaaaattcgtaaacat--tctctcgaag 7305629  T
Q  120 ctcaaacggtatgtaaatttggagttatagtataggttgcaagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncc 219  Q
     | ||  |||||  ||||   |||| |||||  | |||| ||||| ||||| ||||| || |||||||||||||||||||| ||||||||        |     
T  7305628 tttaagtggtatacaaatgaagagtcatagttcatgttgtaagtttgatttcaatgctagatattttattggttatttgaaccttaaattccttttgtct 7305529  T
Q  220 tcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgta-------------aaagtaaaaaattaatttatatt 306  Q
    ||| ||||||||||||  |||||||| ||||||||| ||||||||| ||||||| || ||||||             |||||||||||||||||||||||    
T  7305528 tcagattcctatcaatcgaattcgatatcggttgttataaatatattaagacaattaatgtgtagttaaaatttgtaaaagtaaaaaattaatttatatt 7305429  T
Q  307 agtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacac 392  Q
      ||||||||||||||||||  ||||| | |  ||||||||||||||||||||||||||||||   | ||||||||||||||||||    
T  7305428 tttatcatttcaatattatt--gttattttatgatctctaacaattggtaaataatgtctata---ttaaatattattttcaacac 7305348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 60 - 370
Target Start/End: Complemental strand, 13014912 - 13014591
Alignment:
Q  60 atatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaaactcaaacggtatgtaaatttggagttatagtataggttgc 159  Q
    ||||||||||||| ||||||| || | ||||  |||||||| |||||| |||||||||| |||||  | |||||||||| ||| | || ||  | |||||    
T  13014912 atatttttgtcttagaaaatacttatatatg--aaattttgaaaacatgttcactcgaagctcaagtgatatgtaaattaggaatcatcgttcatgttgc 13014815  T
Q  160 aagttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaa 259  Q
    ||||| ||||| ||||| || ||||||| || ||||||||| ||| ||||          ||| |||| || |||| ||||||||| | |||||||||||    
T  13014814 aagtttgatttcaatgctagctattttaatgattatttgaaccttgaattctttttgctttcagattcttaacaatctaattcgattttggttgttctaa 13014715  T
Q  260 atatatcaagacaagtagtgtgtaa-------------aagtaaaaaattaatttatattagtatcatttcaatattattcagttatataaaaatctcta 346  Q
    |||||| |||| || ||||||||||             |||||| ||||||||||||||| |||||||||||||||||||  ||| | | || ||||| |    
T  13014714 atatattaagataaatagtgtgtaattaaagtttgtaaaagtaacaaattaatttatatttgtatcatttcaatattattttgttcttttaagatctcaa 13014615  T
Q  347 acaattggtaaataatgtctatat 370  Q
    |||||||||||||||| |||||||    
T  13014614 acaattggtaaataatatctatat 13014591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 224 - 370
Target Start/End: Complemental strand, 7302991 - 7302832
Alignment:
Q  224 attcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaa-------------aagtaaaaaattaatttatattagta 310  Q
    ||||||||||||  |||||||||||| ||||||||||||||| ||||||| ||||||||||             | ||||||||||||||||||||  ||    
T  7302991 attcctatcaatcgaattcgatgtcgattgttctaaatatattaagacaattagtgtgtaattaaaatttgtaaacgtaaaaaattaatttatattttta 7302892  T
Q  311 tcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatat 370  Q
    ||||||||||||||||  ||||| | |  ||||||||||||||||||||||| |||||||    
T  7302891 tcatttcaatattattttgttattttatgatctctaacaattggtaaataatatctatat 7302832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 220 - 370
Target Start/End: Original strand, 26228627 - 26228790
Alignment:
Q  220 tcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgta-------------aaagtaaaaaattaatttatatt 306  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||| | |||||| ||||||||||             |||||||||||||||||||||||    
T  26228627 tcaaattcttatcaatctaattcgatgttggttgttctaaatatgttaagacaggtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatt 26228726  T
Q  307 agtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatat 370  Q
     ||||||||| |||||||||  ||||| | || || || |||||||| ||||||||||||||||    
T  26228727 tgtatcattttaatattattttgttattttaagatttccaacaattgataaataatgtctatat 26228790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 224 - 403
Target Start/End: Complemental strand, 38064384 - 38064195
Alignment:
Q  224 attcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgtgtaa-------------aagtaaaaaattaatttatattagta 310  Q
    |||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||||||||             |||||||||||||||||||||| |||    
T  38064384 attcctattaatctaattcgatgtcggttgttttaaatatattaagacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgta 38064285  T
Q  311 tcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacgcacgca 403  Q
    | ||||||||||||||   |||| | || || | ||||||||| ||||||||| |||||   | || |||||||||||||| ||| |||||||    
T  38064284 ttatttcaatattattttattattttaatatttttaacaattgataaataatgactata---ttaactattattttcaacatacatgcacgca 38064195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 274
Target Start/End: Complemental strand, 13013553 - 13013440
Alignment:
Q  161 agttcgattttaatgcaagttattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaaa 260  Q
    |||| ||||| ||||| ||| |||||||| |||||||||| ||||||||        | ||| |||||||||||| ||||| ||||||||||||||||||    
T  13013553 agtttgatttcaatgctagtaattttattcgttatttgaaccttaaattctttttatcttcagattcctatcaatttaatttgatgtcggttgttctaaa 13013454  T
Q  261 tatatcaagacaag 274  Q
    ||||| ||||||||    
T  13013453 tatattaagacaag 13013440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 39546799 - 39546910
Alignment:
Q  291 aaaattaatttatattagtatcatttcaatattattcagttatataaaaatctctaacaattggtaaataatgtctatatattaaaatattattttcaac 390  Q
    |||| ||||||||||| ||||||||||||||||||    |||| | || ||||||| ||||| ||||||||||||||||   | ||||||  ||||||||    
T  39546799 aaaaataatttatatttgtatcatttcaatattatattattattttaagatctctaccaattagtaaataatgtctata---ttaaatatatttttcaac 39546895  T
Q  391 acacacgcacgcacg 405  Q
    |||||||||||||||    
T  39546896 acacacgcacgcacg 39546910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 340 - 402
Target Start/End: Complemental strand, 13012926 - 13012867
Alignment:
Q  340 atctctaacaattggtaaataatgtctatatattaaaatattattttcaacacacacgcacgc 402  Q
    |||||||||||||| ||||||||||||||||    ||||||||||||||||||||||||||||    
T  13012926 atctctaacaattgataaataatgtctatatt---aaatattattttcaacacacacgcacgc 13012867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 181 - 280
Target Start/End: Original strand, 39544793 - 39544892
Alignment:
Q  181 tattttattggttatttgaatcttaaattannnnnnncctcaaattcctatcaatataattcgatgtcggttgttctaaatatatcaagacaagtagtgt 280  Q
    |||||||||||||||||||| ||||||||        | ||| |||| ||||||| ||||| ||||||||||||||||||||||| || |||||| ||||    
T  39544793 tattttattggttatttgaaccttaaattctttttaccttcagattcttatcaatctaatttgatgtcggttgttctaaatatattaaaacaagtggtgt 39544892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 13012970 - 13012925
Alignment:
Q  280 tgtaaaagtaaaaaattaatttatattagtatcatttcaatattat 325  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  13012970 tgtaaaagtaaaaaattaatttatatttatatcatttcaatattat 13012925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 7303161 - 7303097
Alignment:
Q  53 aggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcactcgaa 118  Q
    ||||||||||||||| |||||||||||| |||| || ||||||||| |||||||| ||| ||||||    
T  7303161 aggcctcatatttttatctttgaaaata-ttttctacgtcaaatttcgtaaacatgttctctcgaa 7303097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 11362014 - 11361958
Alignment:
Q  47 cgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaaattttgtaaa 104  Q
    ||||||||| ||| |||||| || ||||||||||||||| ||||||||||||||||||    
T  11362014 cgtactaggtctcgtattttagt-tttgaaaatatttttctatgtcaaattttgtaaa 11361958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 582
Target Start/End: Complemental strand, 38063796 - 38063749
Alignment:
Q  535 tctatttaaatttcactttagacctaaaaatacattgggccgaccctg 582  Q
    |||||||||||||| ||||||||||||| ||||||| ||||| |||||    
T  38063796 tctatttaaatttcgctttagacctaaatatacattaggccggccctg 38063749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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