View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14413_low_7 (Length: 516)
Name: NF14413_low_7
Description: NF14413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14413_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 504
Target Start/End: Complemental strand, 33595474 - 33595000
Alignment:
| Q |
20 |
gaaggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacct |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33595474 |
gaaggcaccaattgtcatcacggctccaggcaccactgctagtccaagagagagtcgccagccccatgtttgcttggcagtcgcgtaatttatgcaacc- |
33595376 |
T |
|
| Q |
120 |
gcagcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcaatttcagaaaggtatagtggagccgcct |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33595375 |
---------acgccaactcctaagaagagttggaagcctgtgctgaaagcacctcaccattttggtggagcaatttcagaaaggtatagtggagccgcct |
33595285 |
T |
|
| Q |
220 |
tttccaattgcatcatgtaatacaattagcaagcaaatttattttaaacaaggtttattaagttaaaagttagtggcaagattttaaataaaggatgcta |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33595284 |
tttccaattgcatcatgtaatacaattagcaagcaaatttattttaaacaaggtttattaagttaaaagttagtagcaagattttaaataaaggatgcta |
33595185 |
T |
|
| Q |
320 |
ttaaaatttgggccacaacattattatttttatgtcccagcgaccacgagacaactatatttgatcccaattatctttaagaacaagaatcgcggcaacg |
419 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33595184 |
ttaaaatttgggccacaacattatgatttttatgtcccagcgaccacgatacaactatatttgatcccaattatctttaagaacaagaatcgcggcaacg |
33595085 |
T |
|
| Q |
420 |
ttgctatttaaaattgcggctaaaagttaaactnnnnnnnggggaaatggtctcattgcttatgtataatagaaaattttatatt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33595084 |
ttgctatttaaaattgcggctaaaagttaaactaaaaaaaggggaaatggtctcattgcttatgtataatagaaaattttatatt |
33595000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 504
Target Start/End: Complemental strand, 33602605 - 33602131
Alignment:
| Q |
20 |
gaaggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacct |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
33602605 |
gaaggcaccaattgtcatcacggctccaggcaccactgctagtccaagagagagtcgccagccccatgtttgcttggcagtcgcgtaatttatgcaacc- |
33602507 |
T |
|
| Q |
120 |
gcagcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcaatttcagaaaggtatagtggagccgcct |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33602506 |
---------acgccaactcctaagaagagttggaagcctgtgctgaaagcacctcaccattttggtggagcaatttcagaaaggtatagtggagccgcct |
33602416 |
T |
|
| Q |
220 |
tttccaattgcatcatgtaatacaattagcaagcaaatttattttaaacaaggtttattaagttaaaagttagtggcaagattttaaataaaggatgcta |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
33602415 |
tttccaattgcatcatgtaatacaattagcaagcaaatttattttaaacaaggtttattaagttaaaagttagtagcaagattttaaataaaggatgcta |
33602316 |
T |
|
| Q |
320 |
ttaaaatttgggccacaacattattatttttatgtcccagcgaccacgagacaactatatttgatcccaattatctttaagaacaagaatcgcggcaacg |
419 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33602315 |
ttaaaatttgggccacaacattatgatttttatgtcccagcgaccacgatacaactatatttgatcccaattatctttaagaacaagaatcgcggcaacg |
33602216 |
T |
|
| Q |
420 |
ttgctatttaaaattgcggctaaaagttaaactnnnnnnnggggaaatggtctcattgcttatgtataatagaaaattttatatt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33602215 |
ttgctatttaaaattgcggctaaaagttaaactaaaaaaaggggaaatggtctcattgcttatgtataatagaaaattttatatt |
33602131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 504
Target Start/End: Complemental strand, 33588302 - 33587828
Alignment:
| Q |
20 |
gaaggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacct |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33588302 |
gaaggcaccaattgtcatcacggcttcaggcaccactgctagtccaagagagagtcgccagccccatgtttgcttggcagtcgcgtaatttatgcaacc- |
33588204 |
T |
|
| Q |
120 |
gcagcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcaatttcagaaaggtatagtggagccgcct |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33588203 |
---------acgccaactcctaagaagagttggaagcctgtgctgaaagcacctcaccattttggtggagcaatttcagaaaggtatagtggagccgcct |
33588113 |
T |
|
| Q |
220 |
tttccaattgcatcatgtaatacaattagcaagcaaatttattttaaacaaggtttattaagttaaaagttagtggcaagattttaaataaaggatgcta |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33588112 |
tttccaattgcatcatgtaatacaattagcaagcaaatttattttaaacaaggtttattaagttaaaagttagtagcaagattttaaataaaggatgcta |
33588013 |
T |
|
| Q |
320 |
ttaaaatttgggccacaacattattatttttatgtcccagcgaccacgagacaactatatttgatcccaattatctttaagaacaagaatcgcggcaacg |
419 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||| |
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|
| T |
33588012 |
ttaaaatttgggccacaacattatgatttttatgtcccagcgaccacgatacaactatatttgatcacaattctctttaagaacaagcatcgcggcaaca |
33587913 |
T |
|
| Q |
420 |
ttgctatttaaaattgcggctaaaagttaaactnnnnnnnggggaaatggtctcattgcttatgtataatagaaaattttatatt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33587912 |
ttgctatttaaaattgcggctaaaagttaaactaaaaaaaggggaaatggtctcattgcttatgtataatagaaaattttatatt |
33587828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 33627408 - 33627191
Alignment:
| Q |
20 |
gaaggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacct |
119 |
Q |
| |
|
||||||||||||||| || || ||||||||||| | ||| |||||||||||||||| ||| |||||||| ||||||||||| | || |||||||||||| |
|
|
| T |
33627408 |
gaaggcaccaattgtaattacagctgcaggcacaactgcaagtccaagagagagtctccatccccatgtatgcttggcagtgccatagtttatgcaacct |
33627309 |
T |
|
| Q |
120 |
gcagcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcaatttcagaaaggtatagtggagccgcct |
219 |
Q |
| |
|
||| | | | |||| |||||| |||||| | |||| |||||| ||||| ||||||||||||||||||||||||||||| ||||| | ||| || |||| |
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|
| T |
33627308 |
gcaacgattataccaaatcctaaaaagaatggaaagcttgtgctcaaagcgcctcgccattttggtggagcaatttcagataggtacaatggtgcagcct |
33627209 |
T |
|
| Q |
220 |
tttccaattgcatcatgt |
237 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
33627208 |
tttccaattgcaacatgt |
33627191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 33618193 - 33617984
Alignment:
| Q |
20 |
gaaggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacct |
119 |
Q |
| |
|
||||| ||| ||||||||||| |||||||| |||| ||| |||||||||||||||| ||| ||||||||||||||||| || ||||| |||||||| || |
|
|
| T |
33618193 |
gaaggaaccgattgtcatcacagctgcaggaaccactgcaagtccaagagagagtctccatccccatgtgtgcttggccgtggcgtagtttatgcagccg |
33618094 |
T |
|
| Q |
120 |
gcagcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcaatttcagaaaggtatagtggagccgcct |
219 |
Q |
| |
|
||||| || || |||| ||| |||||||| || ||||| ||| | |||| |||||||||||||| |||||| ||||||| ||||| | || || |||| |
|
|
| T |
33618093 |
gcagcgactacaccaattcccaagaagaactgaaagcccgtgttaaaagtgcctcgccattttgggggagcagtttcagataggtacaacggtgcagcct |
33617994 |
T |
|
| Q |
220 |
tttccaattg |
229 |
Q |
| |
|
|||||||||| |
|
|
| T |
33617993 |
tttccaattg |
33617984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 33609018 - 33608839
Alignment:
| Q |
20 |
gaaggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacct |
119 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||| ||| |||||||| || |||| ||| ||||||||||||| || || | || |||||||| ||| |
|
|
| T |
33609018 |
gaaggaaccaattgtcatcactattgcaggaaccactgcaagtccaagcgaaagtctccatccccatgtgtgctcagcggtgccatagtttatgcagcct |
33608919 |
T |
|
| Q |
120 |
gcagcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcaatttcaga |
199 |
Q |
| |
|
|||| || || |||||||| || |||||||| ||||| || || ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
33608918 |
gcagtgactacaccaactcccaaaaagaattgaaagccggtactaaaagcgcctcgccattttgggggagcaatttcaga |
33608839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 33622407 - 33622230
Alignment:
| Q |
22 |
aggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacctgc |
121 |
Q |
| |
|
|||| ||||||||||| || | |||| |||||| ||| |||||||||||||||| ||| |||||||| ||| || | | ||||||||| |||| |
|
|
| T |
33622407 |
aggcgccaattgtcattacagatgcaagcaccactgcaagtccaagagagagtctcca------tgtgtgctcggcggtgccattgtttatgcaatctgc |
33622314 |
T |
|
| Q |
122 |
agcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcaatttcagaaaggta |
205 |
Q |
| |
|
||| | | |||| |||||| |||||| | ||||||||||| ||||| |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
33622313 |
agcgattataccaagtcctaaaaagaatggaaagcctgtgctcaaagcgcctcgccattttggtgaagcaatttcagataggta |
33622230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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