View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14413_low_8 (Length: 441)
Name: NF14413_low_8
Description: NF14413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14413_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 7e-90; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 34592708 - 34592915
Alignment:
| Q |
1 |
aattttgtagctatattacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttga |
100 |
Q |
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| T |
34592708 |
aattttgtaggtatattacctcccataaatctcttgcatcaacaatggcttctggttctaggcctatttcagaccaggatgcaattaccgttgcatttga |
34592807 |
T |
|
| Q |
101 |
tgagctcctattccataaaataactgctagcttgttttcacttagaggacctgcccaaacctacaacatacacatctatctatattaagaaaattttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34592808 |
tgagctcctattccataaaataactgctagcttgttttcacttagaggacctgcccaaacctacaacatacacatctatctatattaagaaaattttctt |
34592907 |
T |
|
| Q |
201 |
gagaacat |
208 |
Q |
| |
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|||||||| |
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| T |
34592908 |
gagaacat |
34592915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 255 - 424
Target Start/End: Original strand, 34592971 - 34593140
Alignment:
| Q |
255 |
ttttgactttgctttatttgtttgtgaatagaagagatgtatgcacctaaaaatagtttagtattagtgtcatacttttctatttatgaaagaatgacat |
354 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34592971 |
ttttgtctttgctttatttgtttgtgaatagaagagatgtatgcacctaaaaatagtttagtattagtgtcatacttttctatttatgaaagaatgacat |
34593070 |
T |
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| Q |
355 |
tagcattgaatacaataatggcattaataatacgtacacactagtataatttaagaaaacaagaatgatt |
424 |
Q |
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| T |
34593071 |
aagcattgaatacaataatggcattaataatacgtacacactagtataatttaagaaaacaagaatgatt |
34593140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 34577227 - 34577373
Alignment:
| Q |
16 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttgatgagctcctattcca |
115 |
Q |
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| T |
34577227 |
ttacctcccataaatctcttgcatcaactatcgtttctggttcaaggcctatgtcagaccaagacgcagtaactgttgcatttgatgaacttctattcca |
34577326 |
T |
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| Q |
116 |
taaaataactgctagcttgttttcacttagaggacctgcccaaacct |
162 |
Q |
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||| | ||||||| ||||||| ||| || ||||||||||| |||| |
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| T |
34577327 |
taagaccactgctactttgtttttactaaggggacctgcccatacct |
34577373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 34592927 - 34592959
Alignment:
| Q |
232 |
aggatatatatgaatacaatcaattttgacttt |
264 |
Q |
| |
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| T |
34592927 |
aggatatatatgaatacaatcaattttgacttt |
34592959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 32599926 - 32600073
Alignment:
| Q |
16 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttgatgagctcctattcca |
115 |
Q |
| |
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|||||||||||| ||||||||||||||| |||| ||||| || | |||||| || ||||||||||||||||| ||||| |||||||| || |||||||| |
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| T |
32599926 |
ttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctgaccaagatgcagttactgttgcatttgatgaacttctattcca |
32600025 |
T |
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| Q |
116 |
taaaataactgctagcttgttttcacttagaggacctgcccaaaccta |
163 |
Q |
| |
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|||||| ||||||| ||||| | | | |||||||||||||| ||||| |
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| T |
32600026 |
taaaatcactgctactttgttattagtgagaggacctgcccataccta |
32600073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 32589478 - 32589625
Alignment:
| Q |
16 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttgatgagctcctattcca |
115 |
Q |
| |
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|||||||||||| ||||||||||||||| |||| ||||| || | |||||| || |||||||||||||||| ||||| |||||||| || |||||||| |
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| T |
32589478 |
ttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctaaccaagatgcagttactgttgcatttgatgaacttctattcca |
32589577 |
T |
|
| Q |
116 |
taaaataactgctagcttgttttcacttagaggacctgcccaaaccta |
163 |
Q |
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|||||| ||||||| ||||| | | | |||||||||||||| ||||| |
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| T |
32589578 |
taaaatcactgctactttgttattagtgagaggacctgcccataccta |
32589625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 24884459 - 24884315
Alignment:
| Q |
18 |
acctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttgatgagctcctattccata |
117 |
Q |
| |
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|||||||||| |||||||||||||| || | |||||| || ||||| || ||||||||||||||||| |||| || ||||| || |||||||||| |
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| T |
24884459 |
acctcccataaatctcttgcatcaattgaagttcctggttttagacctaggtcagaccaagatgcagttactattgctttcgatgaacttctattccata |
24884360 |
T |
|
| Q |
118 |
aaataactgctagcttgttttcacttagaggacctgcccaaacct |
162 |
Q |
| |
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| | || |||||| |||| ||||| ||||||||||||||||||| |
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| T |
24884359 |
agacgaccgctagcctgttatcactgagaggacctgcccaaacct |
24884315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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