View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14414_high_10 (Length: 377)
Name: NF14414_high_10
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 55 - 361
Target Start/End: Complemental strand, 8005777 - 8005470
Alignment:
| Q |
55 |
ggaatagaaagctaccttcttcttcattatgccttataggaaatgtgttgtctggtcaagcaaggacaagcaaaactaatcacgtcccaacctcatcctt |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8005777 |
ggaatagaaagctaccttcttcttcattatgccttataggaaatgtgttgtttggtcaagcaaggacaagcaaaactaatcacgtcccaacctcatcctt |
8005678 |
T |
|
| Q |
155 |
atagggggatatgacgggtatgaaaccaccatcaacagcaattggaaaagagattttggggtttcttatatgaatgacccctttaacccacaaaaataca |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8005677 |
atagggggatatgacgggtatgaaaccaccatcaacagcaattggaaaagagattttggggtttcttatatgaatgacccctttaacccacaaaaataca |
8005578 |
T |
|
| Q |
255 |
cgtgaaatcattg-ggggagcaatctctcccatacccgtaaggtaggttgtggatactctaatcatctcatctcaatgaaaattaattagaattacatcc |
353 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8005577 |
cttgaaatcattggggggagcaatctctcccatacccgtaaggtaggttgtggatactctaatcatctcatctcaatgaaaattaattagaattacatcc |
8005478 |
T |
|
| Q |
354 |
caatatca |
361 |
Q |
| |
|
|||||||| |
|
|
| T |
8005477 |
caatatca |
8005470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 7963396 - 7963306
Alignment:
| Q |
55 |
ggaatagaaagctaccttcttcttcattatgccttataggaaatgtgttgtctggtcaagcaaggacaagcaaaactaatcacgtcccaacctca |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7963396 |
ggaatagaaagctaccttcttcttcattatgccttataggaaatgtgttgtctg----atcaaggacaagcaaaactaatcacgtcccaacctca |
7963306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 6909835 - 6909770
Alignment:
| Q |
291 |
gtaaggtaggttgtggatactctaatcatctcatctcaatgaaaattaattagaattacatcccaatatca |
361 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||||||| |
|
|
| T |
6909835 |
gtaaggtaggttgtggatactctgatcatctcac-----tgagaattaattagaactacatcccaatatca |
6909770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University