View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14414_high_2 (Length: 723)
Name: NF14414_high_2
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 14 - 709
Target Start/End: Original strand, 8004684 - 8005368
Alignment:
| Q |
14 |
caaaggacagagaacaaaagaatgctgggtcttattattaccttgatgactgagtttaacaatggaggtctgtctgggtaacaatggaggtctggacgat |
113 |
Q |
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| T |
8004684 |
caaaggacagagaacaaaagaatgctgggtcttattattaccttgatgactgagtttaacaatggaggtctgtctgggtaacaatggaggtctggacgat |
8004783 |
T |
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| Q |
114 |
gatctgggtaacaatggaggtatggctaacaatggaggtggttttgatggtttcaattttgatggagcttatgcagaatgattagtannnnnnnnnaatt |
213 |
Q |
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| T |
8004784 |
gatctgggtaacaatggaggtatggctaacaatggaggtggttttgatggtttcaattttgatggagcttatgcagaatgattagtatttttttttaatt |
8004883 |
T |
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| Q |
214 |
caccagatttacttttttagtcccatggtacatgttgggaatcttggtttagctttgtttttatgttctagaaacatggttaattactttgattgttgat |
313 |
Q |
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| T |
8004884 |
caccagatttacttttttgctcccatggtacatgttgggaatcttggtttagctttgtttttatgttctagaaacatggttaattactttgattgttgat |
8004983 |
T |
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| Q |
314 |
agtttatactcaaaatatagtaatgaccattatcctctccgaagaaaagtgagtacgttgataaaacgagtataatgagaatataacgagaataataaca |
413 |
Q |
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| T |
8004984 |
agtttatattcaaaatatagtaatgaccattatcctctccgaagaaaagtgagtacgttgataaaacga-----------atataacgagaataataaca |
8005072 |
T |
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| Q |
414 |
tttaaataatttcctagatgtgtcatatttatgattgggacttttatactccaaaatttgtacggaaatgatgttttacagctatttataatagttttgg |
513 |
Q |
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| T |
8005073 |
tttaaataatttcctagatgtgtcatatttatgattgggacttttatactccaaaatttgtacggaaatgatgttttacagctatttataatagttttgg |
8005172 |
T |
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| Q |
514 |
gacaaatcttgttatattcttttattagattgttactgtaggctttttgtaccagcatgtaacttgtcaacttgatatcttgatttatattgtatctttt |
613 |
Q |
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| T |
8005173 |
gacaaatcttgttatattcttttattagattgttactgtaggctttttgtaatagcatgtaacttgtcaacttgatatcttgatttatatcgtatctttt |
8005272 |
T |
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| Q |
614 |
atattctatttactctgtctatgtcaatttttatttggcatgctttcgaaattttgtaatagcatataacttgccaacttgatatctttggtttaa |
709 |
Q |
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| T |
8005273 |
atattctatttactctgtctatgtcaatttttatttggcatgctttcgaaattttgtaatagcatgtaacttgccaacttgatatctttggtttaa |
8005368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 51518977 - 51519034
Alignment:
| Q |
14 |
caaaggacagagaacaaaagaatgctgggtcttattattaccttgatgactgagttta |
71 |
Q |
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| T |
51518977 |
caaaggacagagagcaaaagaatgctggctcttattattacctcgatgactgagttta |
51519034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 1300173 - 1300120
Alignment:
| Q |
16 |
aaggacagagaacaaaagaatgctgggtcttattattaccttgatgactgagtt |
69 |
Q |
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| T |
1300173 |
aaggatagagagcaaaagcttgctgggacttattattaccttgatgactaagtt |
1300120 |
T |
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