View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14414_high_5 (Length: 468)
Name: NF14414_high_5
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_high_5 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 2841659 - 2841187
Alignment:
| Q |
1 |
tgtgtaatttatggatgtgatttactatttactattcgagtaaattattatttata----------tatcaattaaagtttttatctcaaaatgtgtaat |
90 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2841659 |
tgtgtaatttatgggtgtgatttactatttactattcgagtaaattattatttataaatcaatatatatcaattaaagtttttatctcaaaatgtgtaat |
2841560 |
T |
|
| Q |
91 |
ctggtgattaa-gggttgagacannnnnnnnng--------agcaaaggttgagacatttcttaaaaataaaagggtcgatacgttatagtataagatat |
181 |
Q |
| |
|
|| |||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
2841559 |
ctagtgattaaagggttgagacatttatttttattttttttagcaaaggttgagacatttcttaaaaatgaaagggtcgagacgttataatataagatat |
2841460 |
T |
|
| Q |
182 |
aagtaacttattttgaggtgtttgaattgttttattattaatggaaaaaaccttaaatgttgatgctaattgaggtgtatcttttgattatnnnnnnnta |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
2841459 |
aagtaacttattttgaggtgtttgaattgttttattattaatggaaaaaaccttaaatgttgatgctaattgaagtgtatcttttgattataaaaaaata |
2841360 |
T |
|
| Q |
282 |
gtcgttgttatagatgatgcataagtggttcagctttagaaatcgtacacagaagcacgaacgaatttggaaac-agagaaatttaatttaatttgaatc |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
2841359 |
atcgttgttatagatgatgcataagtggttcagctttagaaatcgtacacagaagcacgaatgaatttgaaaacaagagaaatttaatttaatttgaatc |
2841260 |
T |
|
| Q |
381 |
atcgtaatatgacatgtgtttctagcttctaatatctttaaatttgaatcatatagtagtattcagatccttt |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2841259 |
atcgtaatatgacatgtgtttctagcttctaatatctttaaatttgaatcatatagtagtattcagatccttt |
2841187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 9 - 453
Target Start/End: Complemental strand, 2849032 - 2848570
Alignment:
| Q |
9 |
ttatggatgtgatttactatttactattcgagtaaattattatttata----------tatcaattaaagtttttatctcaaaatgtgtaatctggtgat |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| || ||||| |
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|
| T |
2849032 |
ttatgggtgtgatttactatttactattcgagtaaattattatttataaatcaatatatatcaattaaagtttttatcacaaaatgtgtaaactagtgat |
2848933 |
T |
|
| Q |
99 |
taa-gggttgagacannnnnnnnng-------agcaaaggttgagacatttcttaaaaataaaagggtcgatacgttatagtataagatataagtaactt |
190 |
Q |
| |
|
||| ||||||| | |||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||| |
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|
| T |
2848932 |
taaagggttgatatttttttttttttttttttagcaaaggttgagacatttcttaaaaataaaagggttgagacattataatataagatataagtaactt |
2848833 |
T |
|
| Q |
191 |
attttgaggtgtttgaattgttttattattaatggaaaaaaccttaaatgttgatgctaattgaggtgtatcttttgattatnnnnnnntagtcgttgtt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
2848832 |
attttgaggtgtttgaattgttttattattaatggaaaaaaccttaaatgttgatgctaattgaggtgtatcttttgattataaaaaaatagtcgctgtt |
2848733 |
T |
|
| Q |
291 |
atagatgatgcataagtggttcagctttagaaatcgtacacagaagcacgaacgaatttggaaacagagaaatttaatttaatttgaatcatcgtaatat |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
2848732 |
atagatgatgcataagtggttcagctttagaaatcgtacacagaagcacgaatgaatttggaaatagagaaatttaatttaatttgaatcatcataatat |
2848633 |
T |
|
| Q |
391 |
gacatgtgtttctagcttctaatatctttaaatttgaatcatatagtagtattcagatccttt |
453 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
2848632 |
gacatgtgtttctggcttctaatatctttaaatttgaatcatatagttgtattcatatccttt |
2848570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 443
Target Start/End: Complemental strand, 6701628 - 6701595
Alignment:
| Q |
410 |
taatatctttaaatttgaatcatatagtagtatt |
443 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
6701628 |
taatatctttaaatttgaatcatataggagtatt |
6701595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 54420746 - 54420281
Alignment:
| Q |
1 |
tgtgtaatttatggatgtgatttactatttactattcgagtaaattattatttata----------tatcaattaaagtttttatctcaaaatgtgtaat |
90 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
54420746 |
tgtgtaacttatgggtgtgatttactatttactattcgagtaaattattatttataaatcaatatatatcaattaaaatttttatctcaaaatgtgtaat |
54420647 |
T |
|
| Q |
91 |
ctggtgattaa-gggttgagacannnnnnnnng--agcaaaggttgagacatttcttaaaaataaaagggtcgatacgttatagtataagatataagtaa |
187 |
Q |
| |
|
|| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| |
|
|
| T |
54420646 |
ctagtgattaaagggttgagacattttttttttttagcaaaggttgagacatttcttaaaaataaaagggttgagacgttataatataagatataagtaa |
54420547 |
T |
|
| Q |
188 |
cttattttgaggtgtttgaattgttttattattaatggaaaaaaccttaaatgttgatgctaattgaggtgtatcttttgattatnnnnnnntagtcgtt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
54420546 |
cttattttgaggtgtttgaattgttttattattgatgaaaaaaatcttaaatgttgatgctaactgaggtgtatcttttgattataaaaaaatagtcgtt |
54420447 |
T |
|
| Q |
288 |
gttatagatgatgcataagtggttcagctttagaaatcgtacacagaagcacgaacgaatttggaaacagagaaatttaatttaatttgaatcatcgtaa |
387 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
54420446 |
gttatagatgatgcataagtggttcggctttagaaatcgtacacagaagcacgaatgaatttggaaacagagaaatttaatttaatttaaatcatcgtaa |
54420347 |
T |
|
| Q |
388 |
tatgacatgtgtttctagcttctaatatctttaaatttgaatcatatagtagtattcagatccttt |
453 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
54420346 |
tatgacatgtgtttctagcttcaaatatctttaaatttgaattatatagtagtattcagatccttt |
54420281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 6982362 - 6981892
Alignment:
| Q |
1 |
tgtgtaatttatggatgtgatttactatttactattcgagtaaattattatttata----------tatcaattaaagtttttatctcaaaatgtgtaat |
90 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6982362 |
tgtgtaacttatgggtgtgatttactatttactattcgagtaaattattatttataaatcaatatatatcaattaaagtttttatctcaaaatgtgtaat |
6982263 |
T |
|
| Q |
91 |
ctggtgattaa-gggttgagacannnnnnnnn----------gagcaaaggttgagacatttcttaaaaataaaagggtcgatacgttatagtataagat |
179 |
Q |
| |
|
|| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| || |||||||| |||||||| |
|
|
| T |
6982262 |
ctaatgattaaagggttgagacatttctttttttttttttttgagcaaaggttgagacatttattaaaaataaaagggttgagacgttataatataagat |
6982163 |
T |
|
| Q |
180 |
ataagtaacttattttgaggtgtttgaattgttttattattaatggaaaaaaccttaaatgttgatgctaattgaggtgtatcttttgattatnnnnnnn |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6982162 |
ataagtaacttattttgaggtgtttgaattgttttattattaatgaaaaaaaccttaaatgttgatgctaactgaggtgtatcttttgattataaaaaaa |
6982063 |
T |
|
| Q |
280 |
tagtcgttgttatagatgatgcataagtggttcagctttagaaatcgtacacagaagcacgaacgaatttggaaacagagaaatttaatttaatttgaat |
379 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6982062 |
tagt---tgttatagatgatgcataagtggttcagctttagaaatcgtacacagaagcacgaatgaatttggaaacagagaaatttaatttaatttgaat |
6981966 |
T |
|
| Q |
380 |
catcgtaatatgacatgtgtttctagcttctaatatctttaaatttgaatcatatagtagtattcagatccttt |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6981965 |
catcgtaatatgacatgtgtttctagcttctaatatctttaaatttgaatcatatagtagtattcagatccttt |
6981892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 386 - 453
Target Start/End: Original strand, 29534438 - 29534505
Alignment:
| Q |
386 |
aatatgacatgtgtttctagcttctaatatctttaaatttgaatcatatagtagtattcagatccttt |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29534438 |
aatatgacatgtgtttctagcttctaatatctttaaatttgaatcatatagtagtattcagatccttt |
29534505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 29534288 - 29534395
Alignment:
| Q |
16 |
tgtgatttactatttactattcgagtaaattattatttata----------tatcaattaaagtttttatctcaaaatgtgtaatctggtgatt-aaggg |
104 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
29534288 |
tgtgatttactatttactattctagtaaattattatttataaatcaatatatatcaattaaagtttttatctcaaaatgtgtaatctagtgattaaaggg |
29534387 |
T |
|
| Q |
105 |
ttgagaca |
112 |
Q |
| |
|
|||||||| |
|
|
| T |
29534388 |
ttgagaca |
29534395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 18484571 - 18484464
Alignment:
| Q |
16 |
tgtgatttactatttactattcgagtaaattattatttata----------tatcaattaaagtttttatctcaaaatgtgtaatctggtgatt-aaggg |
104 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| ||||| |
|
|
| T |
18484571 |
tgtgatttactatttactattcgagtgaattattatttataaatcaatatatatcaattaaagtttttatctaaaaatgtgtaatctagtgattaaaggg |
18484472 |
T |
|
| Q |
105 |
ttgagaca |
112 |
Q |
| |
|
|||||||| |
|
|
| T |
18484471 |
ttgagaca |
18484464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 22623873 - 22623909
Alignment:
| Q |
26 |
tatttactattcgagtaaattattatttatatatcaa |
62 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
22623873 |
tatttactatttgagtaaattattatttataaatcaa |
22623909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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