View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14414_high_7 (Length: 423)

Name: NF14414_high_7
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14414_high_7
NF14414_high_7
[»] chr7 (35 HSPs)
chr7 (1-218)||(5615693-5615910)
chr7 (1-218)||(31824376-31824593)
chr7 (1-218)||(13285982-13286199)
chr7 (34-218)||(25441775-25441959)
chr7 (2-218)||(12827556-12827773)
chr7 (2-218)||(41027198-41027415)
chr7 (10-218)||(42595020-42595228)
chr7 (10-218)||(15988866-15989074)
chr7 (2-195)||(40701581-40701775)
chr7 (62-218)||(33090908-33091065)
chr7 (68-218)||(26348338-26348481)
chr7 (68-218)||(26363373-26363516)
chr7 (68-218)||(5382004-5382147)
chr7 (68-218)||(5391642-5391785)
chr7 (68-218)||(5926865-5927008)
chr7 (68-218)||(6544535-6544678)
chr7 (68-218)||(8500779-8500922)
chr7 (68-218)||(8511249-8511392)
chr7 (68-218)||(46496844-46496987)
chr7 (68-218)||(46507456-46507599)
chr7 (129-218)||(9535429-9535518)
chr7 (129-218)||(9545712-9545801)
chr7 (129-218)||(16132103-16132192)
chr7 (129-218)||(16142652-16142741)
chr7 (68-218)||(32098110-32098253)
chr7 (68-218)||(32108547-32108690)
chr7 (68-217)||(43983207-43983349)
chr7 (129-218)||(6534290-6534379)
chr7 (17-216)||(9006586-9006776)
chr7 (68-218)||(11626553-11626696)
chr7 (129-218)||(44897101-44897190)
chr7 (129-218)||(44907504-44907593)
chr7 (155-218)||(42620989-42621052)
chr7 (169-218)||(14944131-14944180)
chr7 (169-218)||(15371724-15371773)
[»] chr5 (22 HSPs)
chr5 (1-218)||(20947447-20947664)
chr5 (1-218)||(20957836-20958053)
chr5 (215-405)||(38462318-38462508)
chr5 (10-218)||(19548666-19548874)
chr5 (2-218)||(36316016-36316233)
chr5 (68-218)||(27411878-27412021)
chr5 (68-218)||(32070170-32070313)
chr5 (68-218)||(18361007-18361150)
chr5 (68-218)||(21753173-21753316)
chr5 (68-218)||(21762460-21762603)
chr5 (68-218)||(26192189-26192332)
chr5 (68-218)||(26202793-26202936)
chr5 (68-218)||(33939047-33939190)
chr5 (68-218)||(33949447-33949590)
chr5 (68-195)||(18389964-18390084)
chr5 (129-218)||(8765553-8765642)
chr5 (129-218)||(11411297-11411386)
chr5 (17-218)||(21484223-21484414)
chr5 (17-94)||(31105093-31105168)
chr5 (169-218)||(22244538-22244587)
chr5 (169-218)||(23378771-23378820)
chr5 (169-218)||(31105236-31105285)
[»] chr4 (32 HSPs)
chr4 (1-218)||(522415-522632)
chr4 (1-218)||(17421519-17421736)
chr4 (1-218)||(26458002-26458219)
chr4 (2-218)||(30651218-30651432)
chr4 (2-218)||(16057882-16058115)
chr4 (18-218)||(41525532-41525730)
chr4 (68-218)||(5293284-5293427)
chr4 (68-218)||(5302943-5303086)
chr4 (68-218)||(16249176-16249319)
chr4 (68-218)||(27680947-27681090)
chr4 (68-218)||(27690602-27690745)
chr4 (68-218)||(6691948-6692091)
chr4 (68-218)||(6702354-6702497)
chr4 (68-218)||(21845833-21845976)
chr4 (68-218)||(21855425-21855568)
chr4 (68-218)||(21901696-21901839)
chr4 (68-218)||(21911288-21911431)
chr4 (68-218)||(40921573-40921716)
chr4 (68-218)||(16253142-16253285)
chr4 (129-218)||(17985060-17985149)
chr4 (129-218)||(18105611-18105700)
chr4 (129-218)||(3487818-3487907)
chr4 (129-218)||(3497141-3497230)
chr4 (169-218)||(6406019-6406068)
chr4 (68-218)||(15668917-15669060)
chr4 (115-218)||(14600899-14601002)
chr4 (155-218)||(16241871-16241934)
chr4 (68-218)||(13403232-13403375)
chr4 (169-218)||(13793255-13793304)
chr4 (169-218)||(26331049-26331098)
chr4 (169-218)||(52498955-52499004)
chr4 (171-215)||(1293182-1293225)
[»] chr1 (21 HSPs)
chr1 (1-218)||(1974902-1975119)
chr1 (1-220)||(1982266-1982485)
chr1 (1-218)||(1989686-1989903)
chr1 (2-218)||(41208183-41208400)
chr1 (14-218)||(52955486-52955689)
chr1 (16-138)||(13403943-13404065)
chr1 (17-218)||(34822706-34822898)
chr1 (68-218)||(16154613-16154756)
chr1 (68-218)||(25019198-25019341)
chr1 (68-218)||(1186608-1186750)
chr1 (16-144)||(19868880-19869008)
chr1 (68-218)||(21458358-21458501)
chr1 (74-218)||(22956292-22956428)
chr1 (68-218)||(21886043-21886186)
chr1 (17-123)||(30210492-30210597)
chr1 (17-104)||(18062516-18062600)
chr1 (155-218)||(2115810-2115873)
chr1 (155-218)||(30549793-30549856)
chr1 (169-218)||(8540075-8540124)
chr1 (17-104)||(21782371-21782455)
chr1 (169-218)||(41544298-41544347)
[»] scaffold0764 (1 HSPs)
scaffold0764 (1-218)||(997-1214)
[»] scaffold0313 (2 HSPs)
scaffold0313 (1-218)||(5395-5612)
scaffold0313 (1-218)||(19552-19769)
[»] chr8 (15 HSPs)
chr8 (1-218)||(14437029-14437246)
chr8 (1-218)||(26362557-26362774)
chr8 (16-195)||(18536262-18536441)
chr8 (21-218)||(37295552-37295749)
chr8 (2-188)||(12841725-12841912)
chr8 (17-218)||(5867578-5867770)
chr8 (68-218)||(21988126-21988269)
chr8 (68-218)||(21997660-21997803)
chr8 (68-218)||(9325222-9325365)
chr8 (68-218)||(21203000-21203143)
chr8 (68-218)||(21213416-21213559)
chr8 (68-218)||(21334028-21334171)
chr8 (68-218)||(791466-791609)
chr8 (155-218)||(37816670-37816733)
chr8 (17-84)||(20098494-20098559)
[»] chr6 (21 HSPs)
chr6 (1-218)||(34764983-34765200)
chr6 (2-218)||(22223788-22224005)
chr6 (2-218)||(22249623-22249840)
chr6 (2-218)||(8563438-8563655)
chr6 (1-182)||(24370554-24370735)
chr6 (43-218)||(9761643-9761817)
chr6 (68-218)||(20912012-20912155)
chr6 (129-218)||(24922188-24922277)
chr6 (129-218)||(24931224-24931313)
chr6 (68-217)||(31357290-31357432)
chr6 (68-217)||(31367018-31367160)
chr6 (68-220)||(16897676-16897821)
chr6 (68-220)||(16908329-16908474)
chr6 (68-218)||(12454783-12454926)
chr6 (68-218)||(3285575-3285718)
chr6 (17-218)||(27787756-27787948)
chr6 (68-218)||(14791333-14791476)
chr6 (129-217)||(18159845-18159933)
chr6 (129-217)||(18169657-18169745)
chr6 (178-218)||(24361891-24361931)
chr6 (158-195)||(28092396-28092433)
[»] chr3 (23 HSPs)
chr3 (1-218)||(49387571-49387788)
chr3 (2-218)||(24873455-24873672)
chr3 (10-218)||(24793114-24793322)
chr3 (10-215)||(17733773-17733980)
chr3 (10-215)||(19035042-19035249)
chr3 (1-215)||(21542479-21542693)
chr3 (97-195)||(29709504-29709602)
chr3 (129-218)||(6422086-6422175)
chr3 (68-218)||(1685446-1685589)
chr3 (68-218)||(5655821-5655964)
chr3 (96-146)||(8435868-8435918)
chr3 (96-146)||(8439413-8439463)
chr3 (68-218)||(8972576-8972719)
chr3 (68-218)||(8983131-8983274)
chr3 (68-218)||(9536865-9537008)
chr3 (68-218)||(9547191-9547334)
chr3 (129-218)||(6432526-6432615)
chr3 (87-165)||(11044673-11044751)
chr3 (68-218)||(12182-12325)
chr3 (129-218)||(4371161-4371250)
chr3 (129-218)||(4380880-4380969)
chr3 (155-218)||(16335636-16335699)
chr3 (169-218)||(55478238-55478287)
[»] chr2 (24 HSPs)
chr2 (1-218)||(27160129-27160346)
chr2 (1-218)||(27170498-27170715)
chr2 (2-218)||(22901740-22901957)
chr2 (2-218)||(22908981-22909198)
chr2 (2-218)||(19341949-19342154)
chr2 (2-218)||(23721575-23721784)
chr2 (16-216)||(40409231-40409430)
chr2 (1-85)||(15475617-15475702)
chr2 (68-218)||(2998803-2998946)
chr2 (68-218)||(4457925-4458068)
chr2 (68-218)||(4467550-4467693)
chr2 (68-218)||(17488420-17488563)
chr2 (68-218)||(45014462-45014605)
chr2 (68-218)||(45024539-45024682)
chr2 (68-218)||(18650948-18651091)
chr2 (68-218)||(18663066-18663209)
chr2 (68-217)||(5337242-5337384)
chr2 (68-217)||(5347095-5347237)
chr2 (129-218)||(9502867-9502956)
chr2 (129-218)||(9514233-9514322)
chr2 (58-123)||(16135423-16135489)
chr2 (68-218)||(24696691-24696834)
chr2 (169-218)||(29423189-29423238)
chr2 (68-104)||(72429-72465)
[»] scaffold0535 (1 HSPs)
scaffold0535 (2-218)||(1117-1334)
[»] scaffold0811 (1 HSPs)
scaffold0811 (2-218)||(3728-3945)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-149)||(1251-1399)
[»] scaffold0059 (1 HSPs)
scaffold0059 (2-165)||(40842-41006)
[»] scaffold0004 (1 HSPs)
scaffold0004 (9-218)||(241880-242089)
[»] scaffold0009 (1 HSPs)
scaffold0009 (10-94)||(267239-267322)
[»] scaffold0277 (1 HSPs)
scaffold0277 (129-218)||(19571-19660)
[»] scaffold0254 (1 HSPs)
scaffold0254 (68-218)||(8038-8181)
[»] scaffold0014 (1 HSPs)
scaffold0014 (68-218)||(234184-234327)
[»] scaffold0611 (1 HSPs)
scaffold0611 (68-218)||(8100-8243)
[»] scaffold0043 (1 HSPs)
scaffold0043 (68-218)||(93048-93191)
[»] scaffold0142 (1 HSPs)
scaffold0142 (19-147)||(29027-29145)
[»] scaffold0015 (1 HSPs)
scaffold0015 (74-218)||(198888-199024)
[»] scaffold0072 (1 HSPs)
scaffold0072 (68-165)||(28630-28727)
[»] scaffold0057 (1 HSPs)
scaffold0057 (20-147)||(65370-65488)
[»] scaffold0106 (1 HSPs)
scaffold0106 (169-218)||(17482-17531)
[»] scaffold0005 (2 HSPs)
scaffold0005 (115-218)||(216376-216479)
scaffold0005 (155-218)||(310214-310277)
[»] scaffold0234 (1 HSPs)
scaffold0234 (155-218)||(21351-21414)
[»] scaffold0065 (1 HSPs)
scaffold0065 (155-218)||(15658-15721)
[»] scaffold0047 (1 HSPs)
scaffold0047 (160-218)||(74913-74971)
[»] scaffold0406 (1 HSPs)
scaffold0406 (17-104)||(15062-15146)
[»] scaffold0016 (1 HSPs)
scaffold0016 (169-218)||(13645-13694)
[»] scaffold0081 (1 HSPs)
scaffold0081 (167-195)||(13146-13174)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 5615910 - 5615693
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5615910 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 5615811  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5615810 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacattaatt 5615711  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  5615710 acaagtcttacaaatcat 5615693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 31824376 - 31824593
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31824376 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 31824475  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31824476 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacatcaatt 31824575  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  31824576 acaagtcttacaaatcat 31824593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 13286199 - 13285982
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||    
T  13286199 aaaagtacatgactaagatcaatcaaggaataaaggcatttatttgattaaagtcaaaaggggcatcttcaatgttcattcaatactatgaacatttgaa 13286100  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |    
T  13286099 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacatcaaat 13286000  T
Q  201 acaagtcttacaaatcat 218  Q
    |  |||||||||||||||    
T  13285999 aagagtcttacaaatcat 13285982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 34 - 218
Target Start/End: Original strand, 25441775 - 25441959
Alignment:
Q  34 aagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaagaata 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25441775 aagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaagacattaggaatattccattaagaata 25441874  T
Q  134 tcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25441875 tcatcctagatgttttccatgttgcacttcataaatgtttcactattaggatttgattatattaattacaagtcttacaaatcat 25441959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 12827773 - 12827556
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  12827773 aaagtacattgaataagatcaatcaagcaataaatgcatttatttgattaaagtcaaaaagggcatcttcaatgttcattcaagactatgaacatttgaa 12827674  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| || |    
T  12827673 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgttgcacttcatcaatgtttcactattaggatttgattacatcaaat 12827574  T
Q  201 acaagtcttacaaatcat 218  Q
    |  |||||||||||||||    
T  12827573 aagagtcttacaaatcat 12827556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 41027198 - 41027415
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||    
T  41027198 aaagtacattgactaagatcaatcaaggaataaagacatttatttgattaaagtcaaaaggggcatcttcaatgttcattcaaaactatgaacatttgaa 41027297  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || |    
T  41027298 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatatttcactattaggatttgattacatcaaat 41027397  T
Q  201 acaagtcttacaaatcat 218  Q
    |  |||||||||||||||    
T  41027398 aagagtcttacaaatcat 41027415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 42595020 - 42595228
Alignment:
Q  10 tgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaac 109  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||     
T  42595020 tgactaagatcagtcaaggaataaaggcatttatttgattaaagtcaaaaaggacatcttcaatgttcattcaagactatgaacatttgaagtacaaaaa 42595119  T
Q  110 attaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtctt 209  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||  ||||||    
T  42595120 attaagaatattccattaagaatatcatcctagatgttttccatactgcacttcataaatgtttcactattaggatttgattacatcaattaagagtctt 42595219  T
Q  210 acaaatcat 218  Q
    |||||||||    
T  42595220 acaaatcat 42595228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 15989074 - 15988866
Alignment:
Q  10 tgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaac 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| | ||||||||||||||    
T  15989074 tgactaagatcaatcaaggaataaaggcatttatttgattaaagtcaaaaggggcatcttcaatattcattcaagactatgaatatttgaagtacaaaac 15988975  T
Q  110 attaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtctt 209  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || ||  ||||||    
T  15988974 attaggaatattccatcaagaatatcatcctagatgttttccatgctgcacttcatcaatgtttcactattaggatttgattacatcaaataacagtctt 15988875  T
Q  210 acaaatcat 218  Q
    |||||||||    
T  15988874 acaaatcat 15988866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 40701581 - 40701775
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagact-atgaacaattga 99  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||| |||| | |||||| | |||    
T  40701581 aaagtacattgacttagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaaga-catcttcagtgttcattcaagatttatgaacgaatga 40701679  T
Q  100 agtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacat 195  Q
    ||| ||||| |||||||||||||||| ||||||||||| ||||||||| | ||  ||||||||||   |||||||| |||||||||||||||||||    
T  40701680 agtgcaaaatattaggaatattccatcaagaatatcattctagatgttatacacactgcacttcaatgatgtttcattattaggatttgattacat 40701775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 33090908 - 33091065
Alignment:
Q  62 ggcatcttcaatgttcatttaagacta-tgaacaattgaagtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcac 160  Q
    |||||||| | |||||||||||||||| |||||| ||||||||||||||||||  ||||||| || |||||||||||||||||||||    || ||||||    
T  33090908 ggcatctttattgttcatttaagactaatgaacatttgaagtacaaaacattataaatattctatcaagaatatcatcctagatgttacatatactgcac 33091007  T
Q  161 ttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||| ||||||||||||||||||||||||||||| || |   |||||||||||||||    
T  33091008 ttcatcaatgtttcactattaggatttgattacatcaaatgagagtcttacaaatcat 33091065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 26348481 - 26348338
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  26348481 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 26348390  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  26348389 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 26348338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 26363516 - 26363373
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  26363516 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 26363425  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  26363424 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 26363373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 5382147 - 5382004
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  5382147 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 5382057  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  5382056 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 5382004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 5391785 - 5391642
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  5391785 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 5391695  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  5391694 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 5391642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 5926865 - 5927008
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  5926865 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 5926955  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  5926956 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 5927008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 6544535 - 6544678
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  6544535 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 6544625  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  6544626 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 6544678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 8500779 - 8500922
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  8500779 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 8500869  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  8500870 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 8500922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 8511249 - 8511392
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  8511249 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 8511339  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  8511340 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 8511392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 46496844 - 46496987
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  46496844 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 46496934  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  46496935 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 46496987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 46507456 - 46507599
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  46507456 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 46507546  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  46507547 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 46507599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 9535518 - 9535429
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| ||    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  9535518 gaatatcatcctagatgttattatcactgctcttcatcattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 9535429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 9545801 - 9545712
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| ||    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  9545801 gaatatcatcctagatgttattatcactgctcttcatcattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 9545712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 16132192 - 16132103
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| ||    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  16132192 gaatatcatcctagatgttattatcactgctcttcattattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 16132103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 16142741 - 16142652
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| ||    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  16142741 gaatatcatcctagatgttattatcactgctcttcattattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 16142652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 32098110 - 32098253
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  32098110 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 32098201  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||| ||| || |   |||||||||||||||    
T  32098202 attgtttcactattaggatttgattgcatcaaatgatagtcttacaaatcat 32098253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 32108547 - 32108690
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  32108547 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 32108638  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||| ||| || |   |||||||||||||||    
T  32108639 attgtttcactattaggatttgattgcatcaaatgatagtcttacaaatcat 32108690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 43983207 - 43983349
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  43983207 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 43983297  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatca 217  Q
     | ||||||||||||||||||||||||||| || |   ||||||||||||||    
T  43983298 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatca 43983349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 6534290 - 6534379
Alignment:
Q  129 gaatatcatcctagatgtttttcatg-ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| | |||  |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  6534290 gaatatcatcctagatgttat-catcactgctcttcattattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 6534379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 9006586 - 9006776
Alignment:
Q  17 gatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaacattagga 116  Q
    ||||||||||| |||||| | |||||   |||||| ||||||||||  || ||||||||||||| ||||||||||||| ||||| |||       ||| |    
T  9006586 gatcaatcaagcaataaaggtatttacaagattaatgtcaaaaagg--atattcaatgttcattcaagactatgaacacttgaaatac-------tagaa 9006676  T
Q  117 atattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatc 216  Q
    ||||||||   ||||||||||||||||||||       || | ||||||   ||||||||||||||||||||||||||| || |   |||||||||||||    
T  9006677 atattccaaagagaatatcatcctagatgttgcaatcacttctcttcattgttgtttcactattaggatttgattacatcaaatggtagtcttacaaatc 9006776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 11626696 - 11626553
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  11626696 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 11626606  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||| ||| || |   |||||||||||||||    
T  11626605 tattgtttcactattaggatttgattgcatcaaatgatagtcttacaaatcat 11626553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 44897101 - 44897190
Alignment:
Q  129 gaatatcatcctagatgtttttcatg-ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| | |||  |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  44897101 gaatatcatcctagatgttat-catcactgctcttcattattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 44897190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 44907504 - 44907593
Alignment:
Q  129 gaatatcatcctagatgtttttcatg-ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| | |||  |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  44907504 gaatatcatcctagatgttat-catcactgctcttcattattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 44907593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 42620989 - 42621052
Alignment:
Q  155 ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  42620989 ctgctcttcattattgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 42621052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 14944131 - 14944180
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  14944131 tgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 14944180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 15371724 - 15371773
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  15371724 tgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 15371773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 20947447 - 20947664
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20947447 aaaagtacatgactgagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 20947546  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20947547 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacattaatt 20947646  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  20947647 acaagtcttacaaatcat 20947664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 20957836 - 20958053
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20957836 aaaagtacatgactgagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 20957935  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20957936 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacattaatt 20958035  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  20958036 acaagtcttacaaatcat 20958053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 215 - 405
Target Start/End: Complemental strand, 38462508 - 38462318
Alignment:
Q  215 tcattcagaaaggggtaaccacaaagatttaccaaaacgaagattttgttctgatgtggcattgtatgatctggtctaattcttttagcagctgctggat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38462508 tcattcagaaaggggtaaccacaaagatttaccaaaacgaagattttgttctgatgtggcattgtatgatctggtctaattcttttagcagctgctggat 38462409  T
Q  315 gtcagtctcagtagaagtctggcctttacttttgatatctgctgtcctggtttgtagtttcagcagattctgtgtttgctagcttgttggt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38462408 gtcagtctcagtagaagtctggcctttacttttgatatctgctgtcctggtttgtagtttcagcagattctgtgtttgctagctttttggt 38462318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 19548874 - 19548666
Alignment:
Q  10 tgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaac 109  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19548874 tgactaagatcaatcaaggaataaagacatttatttgatttaagtcaaaaagggcatcttcaatgttcatttaagactatgaacatttgaagtacaaaac 19548775  T
Q  110 attaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||  ||||||    
T  19548774 attaggaatattccattaagaatatcatcctagatgtttttcatgttgcacttcataaatgtttcactattaggatttgattacatcaaataagagtctt 19548675  T
Q  210 acaaatcat 218  Q
    |||||||||    
T  19548674 acaaatcat 19548666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 36316016 - 36316233
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  36316016 aaagtacattgactaagatcaatcaaggaataaagacatttatttgattaaagtcaaaaagggcatcttcaatgttcattcaagactatgaacatttgaa 36316115  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||| |||||||||||||||||||||| || |    
T  36316116 gtacaaaacatttggaatattccattaagaatatcatcctagatgttttccatgctgcacttcatcgatgttccactattaggatttgattacatcaaat 36316215  T
Q  201 acaagtcttacaaatcat 218  Q
    |  |||||||||||||||    
T  36316216 aagagtcttacaaatcat 36316233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 27411878 - 27412021
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  27411878 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 27411969  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  27411970 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 27412021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 32070170 - 32070313
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  32070170 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 32070261  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  32070262 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 32070313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 18361007 - 18361150
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  18361007 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 18361097  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  18361098 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 18361150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 21753173 - 21753316
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  21753173 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 21753263  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  21753264 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 21753316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 21762460 - 21762603
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  21762460 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 21762550  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  21762551 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 21762603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 26192332 - 26192189
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  26192332 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 26192242  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  26192241 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 26192189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 26202936 - 26202793
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  26202936 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 26202846  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  26202845 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 26202793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 33939047 - 33939190
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  33939047 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 33939137  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  33939138 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 33939190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 33949447 - 33949590
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  33949447 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 33949537  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  33949538 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 33949590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 18389964 - 18390084
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  18389964 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 18390054  T
Q  166 aaatgtttcactattaggatttgattacat 195  Q
     | |||||||||||||||||||||||||||    
T  18390055 tattgtttcactattaggatttgattacat 18390084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 8765642 - 8765553
Alignment:
Q  129 gaatatcatcctagatgtttttcatg-ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| | |||  |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  8765642 gaatatcatcctagatgttat-catcactgctcttcattattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 8765553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 11411386 - 11411297
Alignment:
Q  129 gaatatcatcctagatgtttttcatg-ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| | |||  |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  11411386 gaatatcatcctagatgttat-catcactgctcttcattattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 11411297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 21484414 - 21484223
Alignment:
Q  17 gatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaacattagga 116  Q
    ||||||||||| |||||| |||||||   | |||| || |||||||  || | ||||||||||||||||||||||||| |||||||||       | |||    
T  21484414 gatcaatcaagcaataaaggcatttacaaggttaatgtaaaaaagg--atatgcaatgttcatttaagactatgaaca-ttgaagtac-------tggga 21484325  T
Q  117 atattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgttt-cactattaggatttgattacattaattacaagtcttacaaat 215  Q
    |||||||| | ||||||||||| ||||||||       || |||||||   |||||| ||||||||||||| |||||||| || ||||||||||||||||    
T  21484324 atattccaatgagaatatcatcttagatgttgcaatcactccacttcagttatgttttcactattaggatt-gattacatcaaatacaagtcttacaaat 21484226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 31105093 - 31105168
Alignment:
Q  17 gatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaaca 94  Q
    ||||||||||| ||||||  ||||||   |||||| | ||||||||  || |||||||||||||||||||||||||||    
T  31105093 gatcaatcaagcaataaagtcatttacaagattaatgccaaaaagg--atattcaatgttcatttaagactatgaaca 31105168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 22244538 - 22244587
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  22244538 tgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 22244587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 23378820 - 23378771
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||| ||||||||||||| || |  ||||||||||||||||    
T  23378820 tgtttcactattacgatttgattacatcaaatggaagtcttacaaatcat 23378771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 31105236 - 31105285
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  31105236 tgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 31105285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 522632 - 522415
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  522632 aaaagtacatgactgagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 522533  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  522532 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacattaatt 522433  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  522432 acaagtcttacaaatcat 522415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 17421736 - 17421519
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  17421736 aaaagtacatgactaagatcaatcaaggaataaaaccatttatttgattaaagtcaaaaaggacatcttcaatgttcattcaagactatgaacatttgaa 17421637  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  17421636 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggaattgattacatcaatt 17421537  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  17421536 acaagtcttacaaatcat 17421519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 26458002 - 26458219
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||| | |||||| |||||||||||||||||  ||||||||||||| |||||    
T  26458002 aaaagtacatgactaagatcaattaaggaataaaggcatttatttgattaaatttaaaaagagcatcttcaatgttcatccaagactatgaacatttgaa 26458101  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| || |    
T  26458102 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgcagcacttcataaatgtttcactattaggagttgattacatcaaat 26458201  T
Q  201 acaagtcttacaaatcat 218  Q
    |  |||||||||||||||    
T  26458202 aagagtcttacaaatcat 26458219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 30651218 - 30651432
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  30651218 aaagtacattgactaagatcaatcaaggaataaacgcatttatttgattaaagtcaaaaagggcatcttcaatgttcattcaagactatgaacatttgaa 30651317  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    |||||||||||| ||   ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||| |||||||||||| || |    
T  30651318 gtacaaaacattggg---attccattaagaatatcatcctagatgttttccatgctgcacttcatcaatgttcctctattagaatttgattacatcaaat 30651414  T
Q  201 acaagtcttacaaatcat 218  Q
    |  |||||||||||||||    
T  30651415 aagagtcttacaaatcat 30651432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 16057882 - 16058115
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaaga--------------- 85  Q
    ||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||                   
T  16057882 aaagtacattgactaggatcaatcaaggaataaaggcatttatttgattaaagtcaaaaagggcatcttcaatgttcattcaagactatgttcattcaag 16057981  T
Q  86 -ctatgaacaattgaagtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattagga 184  Q
     ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||   ||||| |||||| |||||||||||    
T  16057982 actatgaacatttgaagtacaaaatattgggaatattccattaagaatatcatcctagatgttttccatgctgtttttcatcaatgttccactattagga 16058081  T
Q  185 tttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||| || ||  | |||||||||||||    
T  16058082 tttgattacatcaaataagaatcttacaaatcat 16058115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 41525532 - 41525730
Alignment:
Q  18 atcaatcaaggaataaaagcatttatttg-attaaagtcaaaaagggcatcttcaatgttcatttaagact-atgaacaattgaagtacaaaacattagg 115  Q
    |||||||||||| ||||  |||||||||| || ||||||||||   |||| |||| ||| |||| |||||| ||||||||||||| ||||||  ||||||    
T  41525532 atcaatcaaggattaaagacatttatttggataaaagtcaaaa---gcatattcattgtacattaaagacttatgaacaattgaattacaaat-attagg 41525627  T
Q  116 aatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaat 215  Q
    ||||||||  ||||||||||||| || ||||| | |||| ||||||||||  |||||| ||||||||||||| ||||||| || |  | |||||||||||    
T  41525628 aatattcctataagaatatcatcttaaatgttatacatgatgcacttcatttatgttttactattaggatttaattacatcaaatggatgtcttacaaat 41525727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 5293427 - 5293284
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  5293427 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 5293336  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  5293335 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 5293284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 5303086 - 5302943
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  5303086 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 5302995  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  5302994 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 5302943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 16249176 - 16249319
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  16249176 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 16249267  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  16249268 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 16249319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 27681090 - 27680947
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  27681090 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 27680999  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  27680998 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 27680947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 27690745 - 27690602
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  27690745 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 27690654  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  27690653 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 27690602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 6691948 - 6692091
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  6691948 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 6692038  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  6692039 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 6692091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 6702354 - 6702497
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  6702354 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 6702444  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  6702445 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 6702497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 21845833 - 21845976
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  21845833 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 21845923  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  21845924 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 21845976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 21855425 - 21855568
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  21855425 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 21855515  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  21855516 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 21855568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 21901696 - 21901839
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  21901696 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 21901786  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  21901787 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 21901839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 21911288 - 21911431
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  21911288 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 21911378  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  21911379 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 21911431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 40921573 - 40921716
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  40921573 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 40921663  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  40921664 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 40921716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 16253142 - 16253285
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||||||  | | ||||||||||||||||||     | |||| ||||||     
T  16253142 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatattccacaagggaatatcatcctagatgttaaaattactgctcttcatt 16253233  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  16253234 attgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 16253285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 17985149 - 17985060
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| ||    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  17985149 gaatatcatcctagatgttattatcactgctcttcattattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 17985060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 18105700 - 18105611
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| ||    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  18105700 gaatatcatcctagatgttattatcactgctcttcattattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 18105611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 3487907 - 3487818
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||||||||||||||||||  |    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  3487907 gaatatcatcctagatgttaatagcactgctcttcatcattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 3487818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 3497230 - 3497141
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||||||||||||||||||  |    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  3497230 gaatatcatcctagatgttaatagcactgctcttcatcattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 3497141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 6406068 - 6406019
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||||||||||||| |||||||||||| || || ||||||||||||||||    
T  6406068 tgtttcactattagaatttgattacatcaaatagaagtcttacaaatcat 6406019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 15668917 - 15669060
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||||||  | | ||||||||||||||||||       |||| ||||||     
T  15668917 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatattccacaagggaatatcatcctagatgttaaaatcactgctcttcatt 15669008  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  15669009 attgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 15669060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 14601002 - 14600899
Alignment:
Q  115 gaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgttt-cactattaggatttgattacattaattacaagtcttacaa 213  Q
    |||||||||| |  |||||||||||||||||||     | ||||||||||   |||||| ||||||||||||| |||||||| || ||||||||||||||    
T  14601002 gaatattccaatgtgaatatcatcctagatgttgcaattactgcacttcaattatgttttcactattaggatt-gattacatcaagtacaagtcttacaa 14600904  T
Q  214 atcat 218  Q
    |||||    
T  14600903 atcat 14600899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 16241871 - 16241934
Alignment:
Q  155 ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  16241871 ctgctcttcattattgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 16241934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 13403375 - 13403232
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccatta-agaatatcatcctagatgtttttcatgctgcacttcata 166  Q
    |||||||||||||||||||||||||| ||||||||||       |||||||||||||  |  |||||||||||||||||||       |||  ||||||     
T  13403375 ttcaatgttcatttaagactatgaac-attgaagtac-------taggaatattccaaaagggaatatcatcctagatgttaaaatcactgttcttcatt 13403284  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
      ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  13403283 gttgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 13403232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 13793304 - 13793255
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  13793304 tgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 13793255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 26331049 - 26331098
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  26331049 tgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 26331098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 52498955 - 52499004
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  52498955 tgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 52499004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 1293182 - 1293225
Alignment:
Q  171 tttcactattaggatttgattacattaattacaagtcttacaaat 215  Q
    |||||||||||||||| |||||||| || ||||||||||||||||    
T  1293182 tttcactattaggatt-gattacatcaagtacaagtcttacaaat 1293225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 1975119 - 1974902
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1975119 aaaagtacatgactgagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 1975020  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1975019 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacattaatt 1974920  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  1974919 acaagtcttacaaatcat 1974902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1982485 - 1982266
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1982485 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 1982386  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |    
T  1982385 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgcttcactattaggatttgattacatcaaat 1982286  T
Q  201 acaagtcttacaaatcattc 220  Q
    ||||||||||||||||||||    
T  1982285 acaagtcttacaaatcattc 1982266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 1989903 - 1989686
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1989903 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 1989804  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |    
T  1989803 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgcttcactattaggatttgattacatcaaat 1989704  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  1989703 acaagtcttacaaatcat 1989686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 41208183 - 41208400
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  41208183 aaagtacattgactaagatcaatcaagaaataaaggcatttatttaattaaagtcaaaaagggcatcttcaatgttcattcaagactatgaacatttgaa 41208282  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41208283 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacataaatt 41208382  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  41208383 acaagtcttacaaatcat 41208400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 52955689 - 52955486
Alignment:
Q  14 taagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaacatta 113  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||| || || |||||||||| ||||||||||| | ||||||||||||||||||    
T  52955689 taagatcaatcaag-aataaaggcatttatttgattaaagtcaaaaagggtatatttaatgttcattcaagactatgaatatttgaagtacaaaacatta 52955591  T
Q  114 ggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaa 213  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| || ||  ||||||||||    
T  52955590 ggaatattccattaagaatatcatcctagatgttttccacgctgcacttcataaatgtttcactattagaatttgattacatcaaataagagtcttacaa 52955491  T
Q  214 atcat 218  Q
    |||||    
T  52955490 atcat 52955486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 13404065 - 13403943
Alignment:
Q  16 agatcaatcaaggaataaaagcatttatttg-attaaagtcaaaaagggcatcttcaatgttcatttaagact-atgaacaattgaagtacaaaacatta 113  Q
    |||||||||||||| |||| ||||||||||| || ||||||||||  || || |||| |||||||| |||||| ||||||||||||||||||||||||||    
T  13404065 agatcaatcaaggattaaaggcatttatttggataaaagtcaaaa--ggaatattcattgttcattaaagacttatgaacaattgaagtacaaaacatta 13403968  T
Q  114 ggaatattccattaagaatatcatc 138  Q
    |||||| |||  |||||||||||||    
T  13403967 ggaatactcctataagaatatcatc 13403943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 34822706 - 34822898
Alignment:
Q  17 gatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaacattagga 116  Q
    ||||||||||| |||||| | |||||   |||||| |||||||| |  ||||||| |||||||||||||||||||||| |||||||||       |||||    
T  34822706 gatcaatcaagcaataaaggaatttacaagattaatgtcaaaaaag--atcttcattgttcatttaagactatgaacatttgaagtac-------tagga 34822796  T
Q  117 atattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatc 216  Q
    |||||| |   |||||||||| |||||||||    |  |||||||||||   ||||||||||||||||||||||||||| || |   |||||||||||||    
T  34822797 atattctaaagagaatatcatactagatgttacaaacactgcacttcattgttgtttcactattaggatttgattacatcaaatgatagtcttacaaatc 34822896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 16154613 - 16154756
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  16154613 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 16154704  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  16154705 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 16154756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 25019198 - 25019341
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||||||||       |||||||||| ||  | | |||||||||||||||||| ||    |||| ||||||     
T  25019198 ttcaatgttcatttaagactatgaaca-ttgaagtac-------taggaatatttcacaagggaatatcatcctagatgttattatcactgctcttcatc 25019289  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  25019290 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 25019341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 1186750 - 1186608
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataa 167  Q
    ||||||||||||||||||||||||||| |||||||||       ||| |||||||||   ||||||||||||||||||||       |||| ||||||      
T  1186750 ttcaatgttcatttaagactatgaaca-ttgaagtac-------tagaaatattccaaagagaatatcatcctagatgttacaatctctgctcttcattg 1186659  T
Q  168 atgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     ||||||||||||||||||||||||||| || |  ||||||||||||||||    
T  1186658 ttgtttcactattaggatttgattacatcaaatggaagtcttacaaatcat 1186608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 19869008 - 19868880
Alignment:
Q  16 agatcaatcaaggaataaaagcatttatttg-attaaagtcaaaaagggcatcttcaatgttcatttaagact-atgaacaattgaagtacaaaacatta 113  Q
    |||||||||||||| ||||  || ||||||| || |||||||||||   ||| |||| |||||||| |||||| |||||||| |||| |||||| || ||    
T  19869008 agatcaatcaaggattaaagacacttatttggataaaagtcaaaaaaa-catattcattgttcattaaagacttatgaacaaatgaattacaaa-caata 19868911  T
Q  114 ggaatattccattaagaatatcatcctagat 144  Q
    ||||||||||  |||||||||||||||||||    
T  19868910 ggaatattcctctaagaatatcatcctagat 19868880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 21458358 - 21458501
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  21458358 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 21458448  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  21458449 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 21458501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 22956292 - 22956428
Alignment:
Q  74 gttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatg-tt 172  Q
    ||||||||||||||||||||| ||||||||| ||       |||||||||| ||||||||||||||||||||||       ||||||||||   ||| ||    
T  22956292 gttcatttaagactatgaaca-ttgaagtactaa-------gaatattccaataagaatatcatcctagatgttgcaatcactgcacttcagttatgttt 22956383  T
Q  173 tcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||||||||||| ||| |||||| || |||||||||||||||||||    
T  22956384 tcactattagga-ttgtttacatcaaatacaagtcttacaaatcat 22956428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 21886043 - 21886186
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||||||  | | ||||||||||||||||||       |||| ||||||     
T  21886043 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatattccacaagggaatatcatcctagatgttaaaatcactgctcttcatt 21886134  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  21886135 attgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 21886186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 30210492 - 30210597
Alignment:
Q  17 gatcaatcaaggaataaaagcatttattt-gattaaagtcaaaaagggcatcttcaatgttcatttaagac-tatgaacaattgaagtacaaaacattag 114  Q
    ||||||||||||| ||||  ||||||||| ||| ||||||||||   |||| |||| |||||||| ||||| || |||||| |||||||| |||||||||    
T  30210492 gatcaatcaaggattaaagacatttatttggataaaagtcaaaa--tgcatattcattgttcattaaagacttacgaacaaatgaagtac-aaacattag 30210588  T
Q  115 gaatattcc 123  Q
    |||||||||    
T  30210589 gaatattcc 30210597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 18062600 - 18062516
Alignment:
Q  17 gatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtac 104  Q
    ||||||| ||| ||||||  |||||||  | |||| ||||||||||  || |||||||||||||||||||||||||| ||||||||||    
T  18062600 gatcaatgaagcaataaagacatttataaggttaatgtcaaaaagg--atattcaatgttcatttaagactatgaac-attgaagtac 18062516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 2115810 - 2115873
Alignment:
Q  155 ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  2115810 ctgctcttcattattgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 2115873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 30549856 - 30549793
Alignment:
Q  155 ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  30549856 ctgctcttcattattgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 30549793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 8540075 - 8540124
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  8540075 tgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 8540124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 21782371 - 21782455
Alignment:
Q  17 gatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtac 104  Q
    ||||||||||| |||||| |||||||   || ||| ||||||||||   ||||||| ||||||| |||||||| |||| |||||||||    
T  21782371 gatcaatcaagcaataaaggcatttacaagaataatgtcaaaaagg---tcttcaaggttcattcaagactataaacacttgaagtac 21782455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 41544347 - 41544298
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  41544347 tgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 41544298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 1214 - 997
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1214 aaaagtacatgactgagatcaatcaaggaataaaaacatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 1115  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1114 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacattaatt 1015  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  1014 acaagtcttacaaatcat 997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 5395 - 5612
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5395 aaaagtacatgactgagatcaatcaaggaataaaaacatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 5494  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5495 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacattaatt 5594  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  5595 acaagtcttacaaatcat 5612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 19552 - 19769
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19552 aaaagtacatgactgagatcaatcaaggaataaaaacatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 19651  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19652 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacattaatt 19751  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  19752 acaagtcttacaaatcat 19769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 14437029 - 14437246
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14437029 aaaagtacatgactaagatcaatcaaagaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 14437128  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14437129 gtacaaaacattaggaatattccatcaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacatcaatt 14437228  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  14437229 acaagtcttacaaatcat 14437246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 26362774 - 26362557
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| ||||||||| |||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26362774 aaaagtacaagactaagataaatcaaagaataagagcatttattttattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacatttgaa 26362675  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  26362674 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgcttcactattaggatttgattacatcaatt 26362575  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  26362574 acaagtcttacaaatcat 26362557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 18536262 - 18536441
Alignment:
Q  16 agatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagact-atgaacaattgaagtacaaaacattag 114  Q
    ||||||||||| |||||||  |||||||||||||||||| ||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||| ||||     
T  18536262 agatcaatcaaagaataaacacatttatttgattaaagttaaaaagg-catcttcaatgatcattcaagacttatgaacaattgaagtacaaaatattat 18536360  T
Q  115 gaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacat 195  Q
    ||||||||||| |||||||||||||||||| || | |||  ||||||||||  ||||||||||||||| ||||||||||||    
T  18536361 gaatattccatcaagaatatcatcctagatcttatacatagtgcacttcattgatgtttcactattagaatttgattacat 18536441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 37295552 - 37295749
Alignment:
Q  21 aatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatat 120  Q
    |||||||||||||| |||||||||||| |||  ||||||| | ||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  37295552 aatcaaggaataaatgcatttatttgagtaagttcaaaaatgacatcttcaatgttcattcaagactatggacatttgaagtacaaaacattaggaatat 37295651  T
Q  121 tccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | |||||||||||||||||||||||||    |  | |||||| || || ||||||||||||||||||||||| || || |   |||||||||||||||    
T  37295652 ttcattaagaatatcatcctagatgttacatacaccgcactttatcaacgtttcactattaggatttgattatatcaaatggtagtcttacaaatcat 37295749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 188
Target Start/End: Complemental strand, 12841912 - 12841725
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| |||| |||||||||||| ||||||  |||||||| ||||||  ||| |||||||||||| ||||||| || ||||||||||||| |||||    
T  12841912 aaagtacattgacttagatcaatcaagaaataaagacatttattagattaagttcataaagggcatcttgaatgttccttcaagactatgaacatttgaa 12841813  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttg 188  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||||    || ||||||||||| ||||||||||||||||| ||||    
T  12841812 gtacaaaacattaggaatattccatcaaggatatcatgctagatgttacatatactgcacttcatcaatgtttcactattaggctttg 12841725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 5867770 - 5867578
Alignment:
Q  17 gatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaacattagga 116  Q
    |||||||||||||||||| |||||| |  |||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||       |||||    
T  5867770 gatcaatcaaggaataaaggcatttttaggattaaagtcaaaaagg--atcttcaatgttcatttaagactatgaacatttgaagtac-------tagga 5867680  T
Q  117 atattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatc 216  Q
    |||||||| |||||||||||||||||| |||    |   ||| ||||||  ||||||||||||||||||||||||||||||| |   |||||||||||||    
T  5867679 atattccaataagaatatcatcctagacgttacaaacattgcccttcatcgatgtttcactattaggatttgattacattaaatgagagtcttacaaatc 5867580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 21988269 - 21988126
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  21988269 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 21988178  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  21988177 actgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 21988126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 21997803 - 21997660
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  21997803 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 21997712  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  21997711 actgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 21997660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 9325365 - 9325222
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  9325365 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 9325275  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  9325274 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 9325222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 21203143 - 21203000
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  21203143 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 21203053  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  21203052 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 21203000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 21213559 - 21213416
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  21213559 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 21213469  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  21213468 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 21213416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 21334028 - 21334171
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  21334028 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 21334118  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  21334119 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 21334171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 791466 - 791609
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||||||  | | ||||||||||||||||||       |||| ||||||     
T  791466 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatattccacaagggaatatcatcctagatgttaaaatctctgctcttcatt 791557  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  791558 attgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 791609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 37816670 - 37816733
Alignment:
Q  155 ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||||||||||  ||||||||||||||| |||||||||||| || |   |||||||||||||||    
T  37816670 ctgcacttcattgatgtttcactattagaatttgattacatcaaatgagagtcttacaaatcat 37816733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 20098494 - 20098559
Alignment:
Q  17 gatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaag 84  Q
    ||||||||||| ||||||||||||||   |||||| |||||||| |  || |||||||||||||||||    
T  20098494 gatcaatcaagcaataaaagcatttacaagattaatgtcaaaaaag--atattcaatgttcatttaag 20098559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 34764983 - 34765200
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34764983 aaaagtacatgactgagatcaatcaaggaataaaaacatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 34765082  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34765083 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacattaatt 34765182  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  34765183 acaagtcttacaaatcat 34765200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 22224005 - 22223788
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  22224005 aaagtacattgactaagatcaattaaggaataaaggcatttatttgattaaagtcaaaaaggacatcttcaatgttcattcaagactatgaacatttgaa 22223906  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22223905 gtacaaaaaattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacatcaatt 22223806  T
Q  201 acaagtcttacaaatcat 218  Q
    | ||||||||||||||||    
T  22223805 aaaagtcttacaaatcat 22223788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 22249840 - 22249623
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  22249840 aaagtacattgactaagatcaattaaggaataaaggcatttatttgattaaagtcaaaaaggacatcttcaatgttcattcaagactatgaacatttgaa 22249741  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22249740 gtacaaaaaattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacatcaatt 22249641  T
Q  201 acaagtcttacaaatcat 218  Q
    | ||||||||||||||||    
T  22249640 aaaagtcttacaaatcat 22249623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 8563655 - 8563438
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||| |||||    
T  8563655 aaagtacattgactaagatcaatcaaggaataaaggcatttatttgattaaagtcaaaaaggacatcttcaatgttcattctagactatgaacatttgaa 8563556  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  8563555 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcaatattaggatttgattacatcaatt 8563456  T
Q  201 acaagtcttacaaatcat 218  Q
    |  |||||||||||||||    
T  8563455 aagagtcttacaaatcat 8563438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 24370735 - 24370554
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  24370735 aaaagtacatgactaagatcaatcaaggaataaagacatttatttgattaaagtcaaaaagggcatcttcaatgttcattcaagactatgaacatttgaa 24370636  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattag 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  24370635 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgttgcacttcataaatgtttcactattag 24370554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 218
Target Start/End: Complemental strand, 9761817 - 9761643
Alignment:
Q  43 tttgattaaagtcaaaaagggcatcttcaatgttcatttaagact-atgaacaattgaagtacaaaacattaggaatattccattaagaatatcatccta 141  Q
    |||||| ||||||||||  ||||| |||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  9761817 tttgataaaagtcaaaa--ggcatattcattgttcattaaagacttatgaacaattgaagtacaaaacattaggaatattcctctaagaatatcatccta 9761720  T
Q  142 gatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||||| | ||  |||||||||||  |||||| ||| ||| ||||||||||||| || || || |||||||||||||    
T  9761719 gatgttatacacactgcacttcattgatgttttactgttaagatttgattacatcaaatagaaatcttacaaatcat 9761643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 20912012 - 20912155
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  20912012 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 20912103  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  20912104 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 20912155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 24922277 - 24922188
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| ||  | |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  24922277 gaatatcatcctagatgttattattactgctcttcatcattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 24922188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 24931313 - 24931224
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| ||  | |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  24931313 gaatatcatcctagatgttattattactgctcttcatcattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 24931224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 31357290 - 31357432
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  31357290 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 31357381  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatca 217  Q
    | ||||||||||||||||||||||||||| || |   ||||||||||||||    
T  31357382 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatca 31357432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 31367018 - 31367160
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  31367018 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 31367109  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatca 217  Q
    | ||||||||||||||||||||||||||| || |   ||||||||||||||    
T  31367110 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatca 31367160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 16897676 - 16897821
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||  ||||||     
T  16897676 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgttcttcatt 16897767  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcattc 220  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||||    
T  16897768 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcattc 16897821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 16908329 - 16908474
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||  ||||||     
T  16908329 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgttcttcatt 16908420  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcattc 220  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||||    
T  16908421 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcattc 16908474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 12454783 - 12454926
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  12454783 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 12454873  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  12454874 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 12454926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 3285575 - 3285718
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaagaa-tatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  | ||| ||||||||||||||||  |  | |||| ||||||     
T  3285575 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaggaaatatcatcctagatgttagttttactgctcttcatc 3285666  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  3285667 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 3285718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 27787948 - 27787756
Alignment:
Q  17 gatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaacattagga 116  Q
    ||||||||||| |||||| |||||||   | |||| ||||||||||  || |||||||||||||||||||||||||| ||||||||||       |||||    
T  27787948 gatcaatcaagcaataaaggcatttacaaggttaatgtcaaaaagg--atattcaatgttcatttaagactatgaac-attgaagtac-------tagga 27787859  T
Q  117 atattccatta-agaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaat 215  Q
    ||||||||  |  |||||||||||||||||||       |||| ||||||   ||||||||||||||||| ||||||||| || |   ||||||||||||    
T  27787858 atattccaaaagggaatatcatcctagatgttacaatcactgctcttcattgttgtttcactattaggatatgattacatcaaatggtagtcttacaaat 27787759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 14791333 - 14791476
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||||||  | | ||||||||||||||||||       |||| ||||||     
T  14791333 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatattccacaagggaatatcatcctagatgttaaaatcactgctcttcatt 14791424  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  14791425 attgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 14791476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 18159845 - 18159933
Alignment:
Q  129 gaatatcatcctagatgtttttcatg-ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatca 217  Q
    ||||||||||||||||||| | |||  |||| |||||| | ||||||||||||||||||||||||||| || |   ||||||||||||||    
T  18159845 gaatatcatcctagatgttat-catcactgctcttcattattgtttcactattaggatttgattacatcaaatgatagtcttacaaatca 18159933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 18169657 - 18169745
Alignment:
Q  129 gaatatcatcctagatgtttttcatg-ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatca 217  Q
    ||||||||||||||||||| | |||  |||| |||||| | ||||||||||||||||||||||||||| || |   ||||||||||||||    
T  18169657 gaatatcatcctagatgttat-catcactgctcttcattattgtttcactattaggatttgattacatcaaatgatagtcttacaaatca 18169745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 24361931 - 24361891
Alignment:
Q  178 attaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  24361931 attaggatttgattacatcaattaaaagtcttacaaatcat 24361891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 28092396 - 28092433
Alignment:
Q  158 cacttcataaatgtttcactattaggatttgattacat 195  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  28092396 cacttcattgatgtttcactattaggatttgattacat 28092433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 49387788 - 49387571
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49387788 aaaagtacatgactaagatcaatcaaggaataaaggcatttatttgattaaagtcaaaaaggacatcttcaatgttcatttaagactatgaacaattgaa 49387689  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49387688 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtttcactattaggatttgattacattaatt 49387589  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  49387588 acaagtcttacaaatcat 49387571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 24873672 - 24873455
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  24873672 aaagtacattgactaagatcaatcaaggaataaaggcatttatttgataaaagtcaaagaggacatcttcaatgttcatttaagactatgaacatttgaa 24873573  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  24873572 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcataaatgtatcactattaggatttgattacataaatt 24873473  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  24873472 acaagtcttacaaatcat 24873455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 24793114 - 24793322
Alignment:
Q  10 tgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaac 109  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  24793114 tgactaagatcaatcaaggaataaaggcatttatttgattaaagtcaaaaaggacatcttcaatgttcattcaagactatgaacatttgaagtacaaaac 24793213  T
Q  110 attaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| || ||  ||||||    
T  24793214 attaggaatattccattaagaatatcatcctagatgttttctatgctgcacttcataaatgtttcactattaggatttgattacatcaaataagagtctt 24793313  T
Q  210 acaaatcat 218  Q
     ||||||||    
T  24793314 gcaaatcat 24793322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 17733773 - 17733980
Alignment:
Q  10 tgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaa--agggcatcttcaatgttcatttaagactatgaacaattgaagtacaaa 107  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||||||  ||||||||||||||||| ||| |||| |||||||| ||||||||||||    
T  17733773 tgactaagatcaatcaaggaataaagacatttatttggttaaagtcaaaaaaagggcatcttcaatgtttattcaagattatgaacatttgaagtacaaa 17733872  T
Q  108 acattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtc 207  Q
    ||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||||||| ||||||||||||| || ||  ||||    
T  17733873 acattaggaatattccattaagaatatgatcctagatgctttccatgctacacttcataaatgtttcactattatgatttgattacatcaaataagagtc 17733972  T
Q  208 ttacaaat 215  Q
    ||||||||    
T  17733973 ttacaaat 17733980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 19035042 - 19035249
Alignment:
Q  10 tgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaa--agggcatcttcaatgttcatttaagactatgaacaattgaagtacaaa 107  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||||||  ||||||||||||||||| ||| |||| |||||||| ||||||||||||    
T  19035042 tgactaagatcaatcaaggaataaagacatttatttggttaaagtcaaaaaaagggcatcttcaatgtttattcaagattatgaacatttgaagtacaaa 19035141  T
Q  108 acattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtc 207  Q
    ||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||||||| ||||||||||||| || ||  ||||    
T  19035142 acattaggaatattccattaagaatatgatcctagatgctttccatgctacacttcataaatgtttcactattatgatttgattacatcaaataagagtc 19035241  T
Q  208 ttacaaat 215  Q
    ||||||||    
T  19035242 ttacaaat 19035249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 21542693 - 21542479
Alignment:
Q  1 aaaagtacat-gactaagatcaatcaaggaataaaagcatttatttg-attaaagtcaaaaagggcatcttcaatgttcatttaagactat-gaacaatt 97  Q
    |||||||||| |||| |||||||| |||||||||| ||||||||||| ||||||||||||   |||||||||||||||||||||||||| | ||||| ||    
T  21542693 aaaagtacattgacttagatcaataaaggaataaaggcatttatttggattaaagtcaaa---ggcatcttcaatgttcatttaagacttttgaacattt 21542597  T
Q  98 gaagtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacatta 197  Q
     |||||||||| ||||||||||||| || | |||||||||||||||||||   ||| || || |||||  ||||| ||||| ||||||||||||||||||    
T  21542596 aaagtacaaaatattaggaatattcgatcatgaatatcatcctagatgttacacatactacatttcattgatgttacactactaggatttgattacatta 21542497  T
Q  198 attacaagtcttacaaat 215  Q
    | |   ||||||||||||    
T  21542496 aatgagagtcttacaaat 21542479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 29709602 - 29709504
Alignment:
Q  97 tgaagtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacat 195  Q
    ||||||||||||||||| |||||||||  | | |||||||||||||||||| | |||  |||||||||| || |||| ||||||||||||| |||||||    
T  29709602 tgaagtacaaaacattaagaatattcctctcacaatatcatcctagatgttatacatattgcacttcattaacgttttactattaggatttaattacat 29709504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 6422086 - 6422175
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| ||  | |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  6422086 gaatatcatcctagatgttattattactgctcttcatcattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 6422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 1685589 - 1685446
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  1685589 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 1685499  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  1685498 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 1685446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 5655964 - 5655821
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  5655964 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 5655874  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  5655873 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 5655821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 8435918 - 8435868
Alignment:
Q  96 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatgt 146  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  8435918 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatgt 8435868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 8439463 - 8439413
Alignment:
Q  96 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatgt 146  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  8439463 ttgaagtacaatacattaggaatattcctataagaatatcatcctagatgt 8439413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 8972576 - 8972719
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  8972576 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 8972666  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  8972667 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 8972719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 8983131 - 8983274
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  8983131 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 8983221  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  8983222 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 8983274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 9536865 - 9537008
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  9536865 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 9536955  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  9536956 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 9537008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 9547191 - 9547334
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  9547191 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 9547281  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  9547282 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 9547334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 6432526 - 6432615
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| ||  | ||||  ||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  6432526 gaatatcatcctagatgttattattactgcttttcatcattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 6432615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 11044751 - 11044673
Alignment:
Q  87 tatgaacaattgaagtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcat 165  Q
    |||||||||||||| || |||||||||| |||||||   ||||| |||||||||||||||| | ||| || ||||||||    
T  11044751 tatgaacaattgaaatataaaacattagaaatattcttctaagagtatcatcctagatgttatgcatactacacttcat 11044673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 12325 - 12182
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttt--tcatgctgcacttca 164  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||||||  | | ||||||||||||||||||    ||||  ||| |||||    
T  12325 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatattccacaagggaatatcatcctagatgttaaaatcat--tgctcttca 12236  T
Q  165 taaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  12235 ttattgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 12182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 4371161 - 4371250
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||||||||||||||||||  |    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  4371161 gaatatcatcctagatgttaatagcactgctcttcatcattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 4371250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 4380880 - 4380969
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||||||||||||||||||  |    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  4380880 gaatatcatcctagatgttaatagcactgctcttcatcattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 4380969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 16335699 - 16335636
Alignment:
Q  155 ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  16335699 ctgctcttcattattgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 16335636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 55478287 - 55478238
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  55478287 tgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 55478238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 27160346 - 27160129
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27160346 aaaagtacatgactgagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 27160247  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27160246 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcatagatgtttcactattaggatttgattacattaatt 27160147  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  27160146 acaagtcttacaaatcat 27160129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 27170715 - 27170498
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27170715 aaaagtacatgactgagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 27170616  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27170615 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcatagatgtttcactattaggatttgattacattaatt 27170516  T
Q  201 acaagtcttacaaatcat 218  Q
    ||||||||||||||||||    
T  27170515 acaagtcttacaaatcat 27170498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 22901740 - 22901957
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  22901740 aaagtacattgactaagatcaatcaaggaataaatgaatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagattatgaacatttgaa 22901839  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| || |    
T  22901840 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgttgcacttcataaatgtttcactattaggatttgattacatcaaat 22901939  T
Q  201 acaagtcttacaaatcat 218  Q
    |  |||||||||||||||    
T  22901940 aagagtcttacaaatcat 22901957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 22909198 - 22908981
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| |||||    
T  22909198 aaagtacattgactaagatcaatcaaggaataaaggcatttatttgattaaagacaaaaatggcatcttcaatgttcattcaagactatgaacatttgaa 22909099  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| || |    
T  22909098 gtataaaaaattaggaatattccattaagaatatcatcctagatgttttccatgctccacttcataaatgtttcattattaggatttgattacatcaaat 22908999  T
Q  201 acaagtcttacaaatcat 218  Q
    |  |||||||||||||||    
T  22908998 aagagtcttacaaatcat 22908981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 19341949 - 19342154
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  19341949 aaagtacattgactgagatcaatcaaggaataaaggcatttatttgattaaagtcaaaaaggtcatcttcaatgttcattcaagactatgaacatttgaa 19342048  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    |||||||||||||||||||||| |||||||||||||||            |||| |||||||||| ||||||||||||||||||||||||||||| || |    
T  19342049 gtacaaaacattaggaatattctattaagaatatcatc------------catgttgcacttcatcaatgtttcactattaggatttgattacatcaaat 19342136  T
Q  201 acaagtcttacaaatcat 218  Q
    |  |||||||||||||||    
T  19342137 aagagtcttacaaatcat 19342154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 23721575 - 23721784
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||| | |||||||||||||||||| ||||||||||||| |||||    
T  23721575 aaagtacattgactaagatcaatcaaggaataaaggcatttatttgactaaagtccaaaggagcatcttcaatgttcattcaagactatgaacatttgaa 23721674  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    |||||||||||||||||||||||||||| |||       |||   |||| |||| |||||||||||||||||||||||||||||||||||||||| || |    
T  23721675 gtacaaaacattaggaatattccattaataat-------tag-gattttccatgttgcacttcataaatgtttcactattaggatttgattacatcaaat 23721766  T
Q  201 acaagtcttacaaatcat 218  Q
    |  |||||||||||||||    
T  23721767 aagagtcttacaaatcat 23721784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 40409430 - 40409231
Alignment:
Q  16 agatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaacattagg 115  Q
    |||||||||||||||||||  |||||||||||||||||||||||||  |||||| |||||||||| ||||| |||||||||| |||||  ||||||||||    
T  40409430 agatcaatcaaggaataaagccatttatttgattaaagtcaaaaaga-catctttaatgttcattcaagaccatgaacaattcaagtaggaaacattagg 40409332  T
Q  116 aatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaat 215  Q
    |||||||||| |||||||||||||||||||||   ||| || ||||||||  |||||||||||||||  ||||||||||| || |   ||||||||||||    
T  40409331 aatattccatcaagaatatcatcctagatgttacacatactacacttcattgatgtttcactattagagtttgattacatcaaatgagagtcttacaaat 40409232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 15475702 - 15475617
Alignment:
Q  1 aaaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaaga 85  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||    
T  15475702 aaaagtacattgactaagatcaatcaaggaataaaggcatttatttgattaaagtcaaaatgagcatcttcaatgttcattcaaga 15475617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 2998946 - 2998803
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  2998946 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 2998855  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  2998854 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 2998803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 4457925 - 4458068
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  4457925 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 4458016  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  4458017 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 4458068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 4467550 - 4467693
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  4467550 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 4467641  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  4467642 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 4467693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 17488420 - 17488563
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaagaa-tatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||||| |||||||||||||||| ||    |||| ||||||     
T  17488420 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaagaaatatcatcctagatgttattatcactgctcttcatt 17488511  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  17488512 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 17488563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 45014462 - 45014605
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  45014462 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 45014553  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  45014554 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 45014605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 45024539 - 45024682
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| ||    |||| ||||||     
T  45024539 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttattatcactgctcttcatt 45024630  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  45024631 attgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 45024682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 18650948 - 18651091
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  18650948 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 18651038  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  18651039 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 18651091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 18663066 - 18663209
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  18663066 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 18663156  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  18663157 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 18663209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 217
Target Start/End: Complemental strand, 5337384 - 5337242
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  5337384 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 5337294  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatca 217  Q
     | ||||||||||||||||||||||||||| || |   ||||||||||||||    
T  5337293 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatca 5337242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 217
Target Start/End: Complemental strand, 5347237 - 5347095
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  5347237 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 5347147  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatca 217  Q
     | ||||||||||||||||||||||||||| || |   ||||||||||||||    
T  5347146 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatca 5347095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 9502956 - 9502867
Alignment:
Q  129 gaatatcatcctagatgtttttcatg-ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| | |||  |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  9502956 gaatatcatcctagatgttat-catcactgctcttcattattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 9502867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 9514322 - 9514233
Alignment:
Q  129 gaatatcatcctagatgtttttcatg-ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| | |||  |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  9514322 gaatatcatcctagatgttat-catcactgctcttcattattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 9514233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 16135489 - 16135423
Alignment:
Q  58 aaagggcatcttcaatgttcatttaagac-tatgaacaattgaagtacaaaacattaggaatattcc 123  Q
    |||||||||||||||||||||||||| || ||| |||| ||||||||||| ||||| | ||||||||    
T  16135489 aaagggcatcttcaatgttcatttaaaacttataaacatttgaagtacaatacatttgaaatattcc 16135423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 24696834 - 24696691
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||||||  | | ||||||||||||||||||       |||| ||||||     
T  24696834 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatattccacaagggaatatcatcctagatgttaaaatcactgctcttcatt 24696743  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  24696742 attgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 24696691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 29423189 - 29423238
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  29423189 tgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 29423238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 72465 - 72429
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtac 104  Q
    |||||||||||||||||| |||||||| |||||||||    
T  72465 ttcaatgttcatttaagattatgaacacttgaagtac 72429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 1334 - 1117
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||    
T  1334 aaagtacattgactaagataaatcaaggaataaaggcatttatttgattaaagtcaaaaagggcatcttcaatgttcattcatgactatgaacatttgaa 1235  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |  ||||||| || |    
T  1234 gtacaaaacattaggaatattccattaagaatatcatcctagatgttttccatgctgcacttcatcaatgtttcactattaagactcaattacatcaaat 1135  T
Q  201 acaagtcttacaaatcat 218  Q
    |  |||||||||||||||    
T  1134 aagagtcttacaaatcat 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0811 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0811
Description:

Target: scaffold0811; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 3945 - 3728
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||    
T  3945 aaagtacattgactaagatcaatcaaggaataaaggcatttatttgattaaagtcaaaaagggcatcttcaatattcattcaagactatgaatatttgaa 3846  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaatt 200  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||||| |||| |||||||||| | ||||||||||||| |||||||||||||| | |    
T  3845 gtacaaaacattaggaacattcgatcaagaatatcatcctagatgttttccatgatgcacttcatcattgtttcactattacgatttgattacatttaat 3746  T
Q  201 acaagtcttacaaatcat 218  Q
    |  |||||||||||||||    
T  3745 aagagtcttacaaatcat 3728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 1251 - 1399
Alignment:
Q  1 aaaagtacatgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    |||||||||| ||||||||||||||  |||||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  1251 aaaagtacataactaagatcaatcagtgaataaagacatttatttgattcaagtcaaaaagggcatcttcaatgttcattcaagactatgaacatttgaa 1350  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttt 149  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1351 gtacaaaacattaggaatattccatcaagaatatcatcctagatgtttt 1399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 41006 - 40842
Alignment:
Q  2 aaagtacat-gactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaa 100  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||    
T  41006 aaagtacattgactaagagcaatcaaggaataaaagcatttatttgattaaagtcaaaaaaggcatcttcaatgttcattcaagactatgaacatttgaa 40907  T
Q  101 gtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcat 165  Q
    ||||||||| || | |||| | |||||||||||||||||||||||||||||||  ||||||||||    
T  40906 gtacaaaaccttcgcaatagttcattaagaatatcatcctagatgtttttcatattgcacttcat 40842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 242089 - 241880
Alignment:
Q  9 atgactaagatcaatcaaggaataaaagcatttatttg-attaaagtcaaaaagggcatcttcaatgttcatttaagact-atgaacaattgaagtacaa 106  Q
    |||||| |||| ||||||||  ||||  |||||||||| || ||||| ||||  ||||| |||||||||||||||||||| |||||||||||||||||||    
T  242089 atgacttagattaatcaaggtttaaacacatttatttggataaaagtgaaaa--ggcatattcaatgttcatttaagacttatgaacaattgaagtacaa 241992  T
Q  107 aacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagt 206  Q
    ||||||||||||||| |  |||||||||||||||||||||| | ||  || ||||||||  |||| | ||||||||||| ||||||||| || || ||||    
T  241991 aacattaggaatatttctctaagaatatcatcctagatgttatacacactacacttcattgatgtattactattaggatctgattacatcaaatagaagt 241892  T
Q  207 cttacaaatcat 218  Q
    ||||||||||||    
T  241891 cttacaaatcat 241880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 267322 - 267239
Alignment:
Q  10 tgactaagatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaaca 94  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  267322 tgactaagatcaatcaaggaataaaggtatttatttgattaaagtcaaaaagggcatcttcaatgttca-taaagactatgaaca 267239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 19660 - 19571
Alignment:
Q  129 gaatatcatcctagatgtttttcatgctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||||||||| ||  | |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  19660 gaatatcatcctagatgttattattactgctcttcatcattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 19571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 8181 - 8038
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  8181 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 8091  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  8090 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 8038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 234327 - 234184
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatg-ctgcacttcat 165  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||| ||  ||| |||||||||||||||||| | |||  |||| ||||||    
T  234327 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatatttcacaaaggaatatcatcctagatgttat-catcactgctcttcat 234237  T
Q  166 aaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
     | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  234236 tattgtttcactattaggatttgattacatcaaatgatagtcttacaaatcat 234184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 8100 - 8243
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||||||  | | ||||||||||||||||||       |||| |||||||    
T  8100 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatattccacaagggaatatcatcctagatgttaaaatcactgctcttcata 8191  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  8192 attgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 8243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 93191 - 93048
Alignment:
Q  68 ttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaag-aatatcatcctagatgtttttcatgctgcacttcata 166  Q
    ||||||||||||||||||||||||||| |||| ||||       |||||||||||||  | | ||||||||||||||||||       |||| ||||||     
T  93191 ttcaatgttcatttaagactatgaaca-ttgatgtac-------taggaatattccaaaagggaatatcatcctagatgttaaaatcactgctcttcatt 93100  T
Q  167 aatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    | ||||||||||||||||||||||||||| || ||  |||||||||||||||    
T  93099 attgtttcactattaggatttgattacatcaaatagtagtcttacaaatcat 93048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 29145 - 29027
Alignment:
Q  19 tcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaat 118  Q
    ||||||||| |||||| |||||||   | |||| ||||||||||  || |||||||||||||||||||||||||| |||||| |||       ||| |||    
T  29145 tcaatcaagcaataaatgcatttacaaggttaatgtcaaaaagg--atattcaatgttcatttaagactatgaac-attgaaatac-------tagcaat 29056  T
Q  119 attccattaagaatatcatcctagatgtt 147  Q
    |||||| | ||||||||||||||||||||    
T  29055 attccaatgagaatatcatcctagatgtt 29027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 199024 - 198888
Alignment:
Q  74 gttcatttaagactatgaacaattgaagtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatg-tt 172  Q
    ||||||||||||||||||||| |||||||||       || |||||||||| ||||||||||||||||||||||       ||||||||||   ||| ||    
T  199024 gttcatttaagactatgaaca-ttgaagtac-------tatgaatattccaataagaatatcatcctagatgttgcaatcactgcacttcagttatgttt 198933  T
Q  173 tcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||||||||||| ||| |||||| || |||||||||||||||||||    
T  198932 tcactattagga-ttgtttacatcaaatacaagtcttacaaatcat 198888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 28727 - 28630
Alignment:
Q  68 ttcaatgttcatttaagact-atgaacaattgaagtacaaaacattaggaatattccattaagaatatcatcctagatgtttttcatgctgcacttcat 165  Q
    |||| |||||||| |||||| |||||||| ||||||||||| ||||||||||||||    |||||| |||| ||||||||| | |||| ||||||||||    
T  28727 ttcattgttcattaaagacttatgaacaaatgaagtacaaa-cattaggaatattcatcaaagaatttcattctagatgttatacatgttgcacttcat 28630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 65370 - 65488
Alignment:
Q  20 caatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtacaaaacattaggaata 119  Q
    |||||||| ||||||  ||||||   |||||| |||||||| |  ||||||| |||||||| ||||||||||||| |||||||||       ||||||||    
T  65370 caatcaagcaataaatacatttacaagattaatgtcaaaaaag--atcttcagtgttcattcaagactatgaacatttgaagtac-------taggaata 65460  T
Q  120 ttccattaagaatatcatcctagatgtt 147  Q
    ||| |  |||||||||||||||||||||    
T  65461 ttcgaacaagaatatcatcctagatgtt 65488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 17531 - 17482
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||||||||||||||||||||||||||||| |   |||||||||||||||    
T  17531 tgtttcactattaggatttgattacattaaatggtagtcttacaaatcat 17482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 216376 - 216479
Alignment:
Q  115 gaatattccattaagaatatcatcctagatgtttttcatgctgcacttcataaatgttt-cactattaggatttgattacattaattacaagtcttacaa 213  Q
    |||||||||| |  |||||||||||||||||||     | ||||||||||   |||||| ||||||||||||| |||||||| || ||||||||||||||    
T  216376 gaatattccaatgtgaatatcatcctagatgttgcaattactgcacttcaattatgttttcactattaggatt-gattacatcaagtacaagtcttacaa 216474  T
Q  214 atcat 218  Q
    |||||    
T  216475 atcat 216479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 310277 - 310214
Alignment:
Q  155 ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  310277 ctgctcttcattattgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 310214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 21414 - 21351
Alignment:
Q  155 ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||| |||||| | ||||||||||||||||||||||||||| ||||   | |||||||||||||    
T  21414 ctgctcttcattattgtttcactattaggatttgattacatcaattggtattcttacaaatcat 21351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 15658 - 15721
Alignment:
Q  155 ctgcacttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||| |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  15658 ctgctcttcattattgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 15721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 74971 - 74913
Alignment:
Q  160 cttcataaatgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    |||||| | ||||||||||||||||||||||||||| || |   |||||||||||||||    
T  74971 cttcattattgtttcactattaggatttgattacatcaaatggtagtcttacaaatcat 74913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 15062 - 15146
Alignment:
Q  17 gatcaatcaaggaataaaagcatttatttgattaaagtcaaaaagggcatcttcaatgttcatttaagactatgaacaattgaagtac 104  Q
    ||||||||||| ||||||  ||||||   || ||| |||||||||   |||||||| ||||||| ||||||||||||| |||||||||    
T  15062 gatcaatcaagaaataaagacatttacaagactaatgtcaaaaag---atcttcaaggttcattcaagactatgaacacttgaagtac 15146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 13645 - 13694
Alignment:
Q  169 tgtttcactattaggatttgattacattaattacaagtcttacaaatcat 218  Q
    ||||||||||||| ||||||||||||| || |  ||||||||||||||||    
T  13645 tgtttcactattacgatttgattacatcaaatggaagtcttacaaatcat 13694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 13174 - 13146
Alignment:
Q  167 aatgtttcactattaggatttgattacat 195  Q
    |||||||||||||||||||||||||||||    
T  13174 aatgtttcactattaggatttgattacat 13146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University