View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14414_high_9 (Length: 387)
Name: NF14414_high_9
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 371
Target Start/End: Original strand, 51454641 - 51454997
Alignment:
| Q |
15 |
caaaggaagaagctggtgaaggtgataatgatgccgggggctcttcatcatttcaactggtgagaaagagacgcggcagaaagataaaggcggagaagga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
51454641 |
caaaggaagaagctggtgaaggtgataatgatgccggcggctcttcatcatttcaaccggtgagaaagagacgcggcagaaagagaaaggtggagaagga |
51454740 |
T |
|
| Q |
115 |
aaccaccaaaaatgaggttccacaagtccacaagaaacttaaaatcagggagagtaatgctaaggtaacattacatgatcatcactctgttcatttttat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51454741 |
aaccaccaaaaatgaggttccacaagtcctcaagaaacttaaaatcagggagagtaatgctaaggtaacattacatgatcatcactctgttcatttttat |
51454840 |
T |
|
| Q |
215 |
atgtttgagtttggcattatatgtatgtaattgtggttctgttactgtttttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51454841 |
atgtttgagtttggcattatatgtatgtaattgtggttctgttactgtttttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtca |
51454940 |
T |
|
| Q |
315 |
gagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggagaagatattg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51454941 |
gagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggagaagatattg |
51454997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 51496350 - 51496485
Alignment:
| Q |
236 |
tgtatgtaattgtggttctgttactgtttttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagagaaacgataagggcagggt |
335 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||||||||||| ||||||| |||||| ||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
51496350 |
tgtatgtaattgtgattctgttaatgtttctcaatcaacagtggatcgaagaggaatccttgatgtgccatcaatgtcagagaaatgacaagggcagggt |
51496449 |
T |
|
| Q |
336 |
tgtcagatgcacaaaatgcaaacggagaagatattg |
371 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
51496450 |
tgttagatgcacaaaatgcaaacggaaaagatattg |
51496485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 263 - 367
Target Start/End: Original strand, 51479399 - 51479503
Alignment:
| Q |
263 |
ttttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggag |
362 |
Q |
| |
|
|||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51479399 |
ttttcaattaacagtggattgcagaggagtccttaatgtgccatcaatgtcagagaaatgacaagggcagggttgtcagatgcacaaaatgcaaacggaa |
51479498 |
T |
|
| Q |
363 |
aagat |
367 |
Q |
| |
|
||||| |
|
|
| T |
51479499 |
aagat |
51479503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 314
Target Start/End: Original strand, 7996867 - 7996975
Alignment:
| Q |
210 |
tttatatgtttgagtttggcattatatgt---atgtaattgtggttctgttact-gtttttcaatcaacagtggattgaagagggatccttaatgtgtca |
305 |
Q |
| |
|
|||| |||||||||||||| ||||||||| |||||||||| |||||||| | |||||||||||||| |||||||||||||| |||||||| | | || |
|
|
| T |
7996867 |
tttacatgtttgagtttggaattatatgttgcatgtaattgtcattctgttaattgtttttcaatcaacggtggattgaagaggaatccttaacgagcca |
7996966 |
T |
|
| Q |
306 |
tcaatgtca |
314 |
Q |
| |
|
||||||||| |
|
|
| T |
7996967 |
tcaatgtca |
7996975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 30208553 - 30208492
Alignment:
| Q |
236 |
tgtatgtaattgtggttctgttactgtttttcaatcaacagtggattgaagagggatcctta |
297 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || |||||||||| || |||||| |
|
|
| T |
30208553 |
tgtatgtaattgtggttctgttactgtttctcaatcaataggggattgaagatgggtcctta |
30208492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 27395515 - 27395621
Alignment:
| Q |
265 |
ttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggagaa |
364 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| || | |||||||||||||||||||| ||||||||||||| || |
|
|
| T |
27395515 |
ttcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaagaaatgacagtggcagggttgtcagatgcaccaaatgcaaacggaaaa |
27395614 |
T |
|
| Q |
365 |
gatattg |
371 |
Q |
| |
|
||||||| |
|
|
| T |
27395615 |
gatattg |
27395621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 43160047 - 43160133
Alignment:
| Q |
53 |
ggctcttcatcatttcaactggtgagaaagagacgcggcagaaagataaaggcggagaaggaaaccaccaaaaatgaggttccacaa |
139 |
Q |
| |
|
||||||||||||||||||| || |||||||| | |||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43160047 |
ggctcttcatcatttcaaccggagagaaagaaatgcggcagaaagagaaaatcggagaaggaaaccaccgaaaatgaggttccacaa |
43160133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University