View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14414_low_1 (Length: 895)
Name: NF14414_low_1
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 777; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 15 - 876
Target Start/End: Complemental strand, 42394148 - 42393287
Alignment:
| Q |
15 |
catagggaagccgaacttgtcggannnnnnncctgcgttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgat |
114 |
Q |
| |
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||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42394148 |
catagggaagccgaacttgtcagatttttttcctgcgctggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgat |
42394049 |
T |
|
| Q |
115 |
ggaatatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaagg |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42394048 |
ggaatatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaagg |
42393949 |
T |
|
| Q |
215 |
aggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttgttacacatttatgtttagcgtcttctcacn |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393948 |
aggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttgttacacatttatgtttagcgtcttctcact |
42393849 |
T |
|
| Q |
315 |
nnnnnnngcggcatatggtttatttaactctgattcaaattaaaatttatttgagaatgctaacatgtgccctaaggcacgtgttgaagaacttaatacc |
414 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
42393848 |
tttttttgcggtatatggtttgtttaactctgattcaaattaaaatttatttgagaatgctaacatgtgccctaaggcgtgcgttgaagaacttaatacc |
42393749 |
T |
|
| Q |
415 |
attgagtttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaaaccaggagta |
514 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42393748 |
attgagtttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgaatttgcaatggcagaaatgatgaacaaaccaggagta |
42393649 |
T |
|
| Q |
515 |
atgaggaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatga |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42393648 |
atgaggaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatga |
42393549 |
T |
|
| Q |
615 |
aagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttg |
714 |
Q |
| |
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|
| T |
42393548 |
aagaaacccttcgtttgcacccatcacttccacttctaatgtctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttg |
42393449 |
T |
|
| Q |
715 |
tgtgtttgtgaacgtttgggctattcatagagacccttccatttgggagaaaccgttagaatttgatccgacaaggttcttggatggtaaatgggattat |
814 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393448 |
tgtgtttgtgaacgtttgggctattcatagagacccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatggtaaatgggattat |
42393349 |
T |
|
| Q |
815 |
aaagggaatgacttcaattatttcccctttggttctggaagaaggatatgtgctggaatagc |
876 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42393348 |
aaagggaatgacttcaattatttcccctttggttctggaagaaggatatgtgctggaatagc |
42393287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 429 - 876
Target Start/End: Complemental strand, 42377182 - 42376735
Alignment:
| Q |
429 |
aacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaaaccaggagtaatgaggaaggttca |
528 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
42377182 |
aacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatggcagaaatgatgaacaaaccagaagtgatgaggaaggttca |
42377083 |
T |
|
| Q |
529 |
agaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgt |
628 |
Q |
| |
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|||||| || ||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||| |||||| |
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|
| T |
42377082 |
agaggagttagaaactgtggttggaaaagataacttagtagaagagtctcatattcacaagctaacctacttacatgcagtgatgaaagaaactcttcgt |
42376983 |
T |
|
| Q |
629 |
ttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacg |
728 |
Q |
| |
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|| ||||| ||||||||||| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| ||| | |||| |
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|
| T |
42376982 |
ttacaccctgcacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtctttatcaacg |
42376883 |
T |
|
| Q |
729 |
tttgggctattcatagagacccttccatttgggagaaaccgttagaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgactt |
828 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
42376882 |
tttgggctattcatagagacccttatgtttgggagaacccactagaatttgatcctacaaggttcttggatggtaaatgggattatagtgggaatgactt |
42376783 |
T |
|
| Q |
829 |
caattatttcccctttggttctggaagaaggatatgtgctggaatagc |
876 |
Q |
| |
|
||| |||||||| ||||| |||||||||||||| ||||| |||||||| |
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|
| T |
42376782 |
caactatttcccttttggctctggaagaaggatttgtgccggaatagc |
42376735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 420 - 732
Target Start/End: Complemental strand, 42387539 - 42387228
Alignment:
| Q |
420 |
gtttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaaaccaggagtaatgag |
519 |
Q |
| |
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|||| |||||||||||||||||| | ||||||||||||||||||||||| || ||||||||| ||| ||| |||||||| |||| |||| ||||||||| |
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|
| T |
42387539 |
gtttatatgaacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatagcataaatgatggacaa-ccagaagtaatgag |
42387441 |
T |
|
| Q |
520 |
gaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaa |
619 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
42387440 |
gaaggttcaagaggaactggaaatcgtggttgggaaagataacttagtagaagagtctcatattcaaaagctaccctacttgcaagcagtaatgaaagaa |
42387341 |
T |
|
| Q |
620 |
acccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgt |
719 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| | |
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|
| T |
42387340 |
acccttcgtttgcacccaacacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtct |
42387241 |
T |
|
| Q |
720 |
ttgtgaacgtttg |
732 |
Q |
| |
|
|| | |||||||| |
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|
| T |
42387240 |
ttatcaacgtttg |
42387228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 42378229 - 42377959
Alignment:
| Q |
19 |
gggaagccgaacttgtcggannnnnnncctgcgttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaa |
118 |
Q |
| |
|
||||||||||| |||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| | |
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|
| T |
42378229 |
gggaagccgaatttgtcggatttttttcctgggttggcccggtttgatttgcagggtgttgtgaaagatatgaatgctttggtgcctcgctttgatggga |
42378130 |
T |
|
| Q |
119 |
tatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggag---agtgaaagtaaggattttttgcagtttttgttgaatttgaagga |
215 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||| | || || |||||| | || |||| ||| ||| ||||||||||||||||||||||||| |
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|
| T |
42378129 |
tatttgagaagatgattggtgaacgattgaagaaggaagaggatgggaaggagaataatgggagtagggactttctgcagtttttgttgaatttgaagga |
42378030 |
T |
|
| Q |
216 |
ggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttgtt |
286 |
Q |
| |
|
||| |||||||| |||||||| || |||| || || || |||||||| ||| ||||||||||| |||||| |
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|
| T |
42378029 |
ggagggtgattctaagacaccgtttacaaatactcatgttaaggctctactcatggtatgctacttttgtt |
42377959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 787 - 876
Target Start/End: Complemental strand, 42387220 - 42387131
Alignment:
| Q |
787 |
aaggttcttggatggtaaatgggattataaagggaatgacttcaattatttcccctttggttctggaagaaggatatgtgctggaatagc |
876 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||| |||||||| |
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| T |
42387220 |
aaggttcttggatggtaaatgggattatagtgggaatgacttcaactatttcccttttggctctggaagaaggatttgtgccggaatagc |
42387131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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