View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14414_low_14 (Length: 320)
Name: NF14414_low_14
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 48542008 - 48541697
Alignment:
| Q |
1 |
cgtaacatggcacttttcttctcaggtggggatagaaaagagttgaaactaagagtaacaggaaggatatggaaagagcagcaaaactctgaatgcacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542008 |
cgtaacatggcacttttcttctcaggtggggatagaaaagagttgaaactaagagtaacaggaaggatatggaaagagcagcaaaactctgaatgcacac |
48541909 |
T |
|
| Q |
101 |
ccaacatgtgtagctaggttgtgctatttcttattgtagattactagattttggaaagtcttatctagttatcttggtgtatgttttgttaatggttatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48541908 |
ccaacatgtgtagctaggttgtgctatttcttattgtagattactagattttggaaagtcttatctagttatcttggtgtatgttttgttaatggttatg |
48541809 |
T |
|
| Q |
201 |
gaggtttcaatttacaaaacacactacttcccttctcatgccacttttcatttcttgttcataacaagtaatacaagcaagaatctttacttctacagct |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48541808 |
gaggtttcaatttacaaaacac---acttcccttctcatgccacttttcatttcgtgttcataacaagtaatacaagcaagaatctttacttctacagct |
48541712 |
T |
|
| Q |
301 |
acttgcatcttccta |
315 |
Q |
| |
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|||| ||||||||| |
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| T |
48541711 |
actttgatcttccta |
48541697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 9837367 - 9837456
Alignment:
| Q |
4 |
aacatggcacttttcttctcaggtggggatagaaaagagttgaaactaagagtaacaggaaggatatggaaagagcagcaaaactctgaa |
93 |
Q |
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| T |
9837367 |
aacatggcacttttcttctctggtggagataggaaagagctgaagttacgagtaacaggaaggatatggaaagaacagcaaaaccctgaa |
9837456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 41632858 - 41632791
Alignment:
| Q |
7 |
atggcacttttcttctcaggtggggatagaaaagagttgaaactaagagtaacaggaaggatatggaa |
74 |
Q |
| |
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|||||||| || ||||| ||||||||||| || ||||||||||| ||||| || ||||| |||||||| |
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| T |
41632858 |
atggcactatttttctctggtggggataggaaggagttgaaacttagagtcaccggaagaatatggaa |
41632791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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