View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14414_low_15 (Length: 314)
Name: NF14414_low_15
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 36843566 - 36843854
Alignment:
| Q |
8 |
ggtagattatacttacactcataacattgagaaattggtgaggaaagtatgcatgctatcacaggagcctggtgaaactcatgaaaaccgctgtttgagg |
107 |
Q |
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| T |
36843566 |
ggtagattctacttacactcataacattgagaaattggtgaggaaagtatgcatgctatcacaggagcctggtgaaactcatgaaaacggctgtttgagg |
36843665 |
T |
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| Q |
108 |
gcctcaagcttgcaatgcctttcagcaatggtaattaatgctccatttgaattgctatacgtttcacttctgattttgcatgtcttctggaacataatgt |
207 |
Q |
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| T |
36843666 |
gcctcaagcttgcaatgcctttcagcaatggtaattagtgctccatttgaattgctatacgtttcacttctgattttgcatgttttctggaacataatgt |
36843765 |
T |
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| Q |
208 |
ttcaattcatggatgacttacttcccaatgtttattttcatctaaaattctacggttgtttgttgtgacttcattattgttttagagtc |
296 |
Q |
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| T |
36843766 |
ttcaattcatggatgacttacttcccaatgtttattttcatctaaaattctatggttgtttgttgtgacttcattattgtttcagagtc |
36843854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 37512677 - 37512480
Alignment:
| Q |
8 |
ggtagattatacttacactcataacattgagaaattggtgaggaaagtatgcatgctatcacaggagcctggtgaaactcatgaaaaccgctgtttgagg |
107 |
Q |
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| T |
37512677 |
ggtagattctacttacactcataacattgagaaattggtgaggaaagtatgcatgctatcacaggagccaggtgaaacacatgaaaaccgctgtttgagg |
37512578 |
T |
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| Q |
108 |
gcctcaagcttgcaatgcctttcagcaatggtaattaatgctccatttgaattgctatacgtttcacttctgattttgcatgtcttctggaacataat |
205 |
Q |
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| T |
37512577 |
gcctcaagcttgcaatgcctttcagcaatggtaactagtgctccatttgaattgttatgcgtttcacttccaaatttgcatgttttctggaacataat |
37512480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 37512186 - 37512120
Alignment:
| Q |
223 |
acttacttcccaatgtttattttcatctaaaattctacggttgtttgttgtgacttcattattgttt |
289 |
Q |
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| T |
37512186 |
acttactttccaatgtttattttcatgtaaaattttgtggttgtttgttgtgacttcattatcgttt |
37512120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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