View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14414_low_17 (Length: 288)
Name: NF14414_low_17
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 286
Target Start/End: Complemental strand, 31475782 - 31475510
Alignment:
| Q |
14 |
tactagttagaattctacaagatgcgatgtcatgttcatatagacttgagtttgaacccctatttgattttcaatgctattctttattttagcaaattca |
113 |
Q |
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| T |
31475782 |
tactagttagaattctacaagatgtgatgtcatgttcatatagacttgagtttgaacccctatttgattttcaatgctattctttatttgagcaaattca |
31475683 |
T |
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| Q |
114 |
ccaaatcatacatttgtttctcctttcttaccacaggaagtacatttcacatcggttccacgtatgatgtgtttaatattgttatagtatgttggtttct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31475682 |
ccaaatcatacatttgtttctcctttcttaccacaggaagtacatttcacatgggttccacgtatgatgtgtttaatattgttatagtatgttggtatct |
31475583 |
T |
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| Q |
214 |
tccacattgagtacacaaatgataaatatatatttcaagtcggttccattacactgctaataaaatgacctta |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31475582 |
tccacattgagtacacaaatgataaatatatatttcaagtcggttccattacactgctaataaaatgacctta |
31475510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 49 - 263
Target Start/End: Complemental strand, 31477589 - 31477375
Alignment:
| Q |
49 |
tcatatagacttgagtttgaacccctatttgattttcaatgctattctttattttagcaaattcaccaaatcatacatttgtttctcctttc-ttaccac |
147 |
Q |
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| T |
31477589 |
tcatacagacttgagtttgaacacctacttgattttgaatgacattctttattttggtaacttcaccaaatcatacatttgttcctcctttcgttactac |
31477490 |
T |
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| Q |
148 |
aggaagtacatttcacatcggttccacgtatgatgtgtttaatattgttatagtatgttggtttcttccacat-tgagtacacaaatgataaatatatat |
246 |
Q |
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|| |||||||||||||||| ||||||||||||| ||||||||||||||||| || |||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
31477489 |
agaaagtacatttcacatcagttccacgtatga--tgtttaatattgttataatacgttggtatcttccacatccgagtacacaaatgataaatatatat |
31477392 |
T |
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| Q |
247 |
ttcaagtcggttccatt |
263 |
Q |
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|||| |||||||||||| |
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| T |
31477391 |
ttcacgtcggttccatt |
31477375 |
T |
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