View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14414_low_18 (Length: 287)
Name: NF14414_low_18
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 30090889 - 30091162
Alignment:
| Q |
13 |
cagaggcatgaggacaagccatggatgtacctgacatgaaattgtagtcacttgataagtacttatttttgccaattctagctgttggtttacatggaac |
112 |
Q |
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| T |
30090889 |
cagaggcatgaggacaagccatggatgttcctgacatgaaattgtagtcacttgataagaacacatcggtaccaattctagctgttggtttataaggaac |
30090988 |
T |
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| Q |
113 |
aaaagcagcaagaacactagacccaggtgccattatgtcaggcttcaaaatccatggaaagccatgtgatggacctcttgatgattaatgagctgcaatt |
212 |
Q |
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| T |
30090989 |
aaaagcagcgagaactcttgatccaggtgccattatgtcaggcttcaaaatccaaggaaagccatgtgatggacctcttgatgagtaatgagctgcaatt |
30091088 |
T |
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| Q |
213 |
ggtgctggctttattccaagaaatgtttgttgaaacttaatgcttgctgttggattatacttattgctttttgc |
286 |
Q |
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| T |
30091089 |
ggtgccggttttattccaagaaatgtttgttgaaacttaatgcttgctgttggattattcttattgcgttttgc |
30091162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 30100021 - 30099772
Alignment:
| Q |
19 |
catgaggacaagccatggatgtacctgacatgaaattgtagtcacttgataagtacttatttttgccaattctagctgttggtttacatggaacaaaagc |
118 |
Q |
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| T |
30100021 |
catgaggacaagacatggatgttcctgacatgaaattgtagtcacttgataagaacacatttgtgccaattctagctgttggtttgttaggaatataagc |
30099922 |
T |
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| Q |
119 |
agcaagaacactagacccaggtgccattatgtcaggcttcaaaatccatggaaagccatgtgatggacctcttgatgattaatgagctgcaattggtgct |
218 |
Q |
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| T |
30099921 |
tgcaagaactcttgatccaggtgccattatatcaggtttcaaaatccatggatagctatgtgaaggacctcttgatgagtaatatgctgcagctggtgcc |
30099822 |
T |
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| Q |
219 |
ggctttattccaagaaatgtttgttgaaacttaatgcttgctgttggatt |
268 |
Q |
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| T |
30099821 |
ggctttgttcctacaaatgtttgttgaaatttgatgcttgatgtaggatt |
30099772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 266
Target Start/End: Original strand, 35170714 - 35170868
Alignment:
| Q |
112 |
caaaagcagcaagaacactagacccaggtgccattatgtcaggcttcaaaatccatggaaagccatgtgatggacctcttgatgattaatgagctgcaat |
211 |
Q |
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| T |
35170714 |
caaaagcagctagaacataagaaccaggtgccataatgtcaggctttaagattcttggatagctttttgaaggacctcttgaactgtaataagcagcagc |
35170813 |
T |
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| Q |
212 |
tggtgctggctttattccaagaaatgtttgttgaaacttaatgcttgctgttgga |
266 |
Q |
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| T |
35170814 |
tggtgctggctttgttccaacgaatgtttgtcgaaaattgatgctagcagttgga |
35170868 |
T |
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