View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14414_low_20 (Length: 257)
Name: NF14414_low_20
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_low_20 |
 | |
|
| [»] scaffold0110 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 97 - 243
Target Start/End: Original strand, 30037618 - 30037764
Alignment:
| Q |
97 |
aagagacaagaatcgttcttctggtaaaactgattccaaatccaaaatccgtatacactgtcagtgtatagaaacggcattcacaaacgttgcagccaag |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30037618 |
aagagacaagaatcgttcttctggtaaaactgattccaaatccaaaatccgtatacactgtcagtgtatagaaacggcattcacaaacgttgcagccaag |
30037717 |
T |
|
| Q |
197 |
ctcagttatcaatgttaaggtactcgtctctcttctctgttccttct |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30037718 |
ctcagttatcaatgttaaggtactcgtctctcttctctgttccttct |
30037764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 97 - 243
Target Start/End: Original strand, 30153207 - 30153353
Alignment:
| Q |
97 |
aagagacaagaatcgttcttctggtaaaactgattccaaatccaaaatccgtatacactgtcagtgtatagaaacggcattcacaaacgttgcagccaag |
196 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30153207 |
aagagacaagaatcgttcttctggaaaaactgattccaaatccaaaatccgtatacactgtcagtgtatagaaacggcattcacaaacgttgcagccaag |
30153306 |
T |
|
| Q |
197 |
ctcagttatcaatgttaaggtactcgtctctcttctctgttccttct |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30153307 |
ctcagttatcaatgttaaggtactcgtctctcttctctgttccttct |
30153353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 30039948 - 30040059
Alignment:
| Q |
132 |
ccaaatccaaaatccgtatacactgtcagtgtatagaaacggcattcacaaacgttgcagccaagctcagttatcaatgttaaggtactcgtctctcttc |
231 |
Q |
| |
|
||||||| ||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30039948 |
ccaaatcgaaaattcatttacgctgtcagtgtatagaaacggcattcacaaacgttgcagccaagctcagttatcaatgttaaggtattcgtctctcttc |
30040047 |
T |
|
| Q |
232 |
tctgttccttct |
243 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30040048 |
tctgttccttct |
30040059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 30153089 - 30153178
Alignment:
| Q |
9 |
ttattctatcatgacgttctgaatataactaaaagttatggannnnnnnnnnctcgaggaaatcaccagccttttattaatatttgaaaa |
98 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30153089 |
ttattctatgatgatgttgtgaatataactaaaagttatggattttttttttctcgaggaaatcaccagccttttattaatatttgaaaa |
30153178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 30037502 - 30037545
Alignment:
| Q |
7 |
aattattctatcatgacgttctgaatataactaaaagttatgga |
50 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30037502 |
aattattctatcatgacgttcagaatataactaaaagttatgga |
30037545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 30148268 - 30148326
Alignment:
| Q |
132 |
ccaaatccaaaatccgtatacactgtcagtgtatagaaacggcattcacaaacgttgca |
190 |
Q |
| |
|
|||||||||| || | | |||||||||||||| |||||| ||||||||||| ||||||| |
|
|
| T |
30148268 |
ccaaatccaacattcatttacactgtcagtgtttagaaatggcattcacaatcgttgca |
30148326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 45126 - 45015
Alignment:
| Q |
132 |
ccaaatccaaaatccgtatacactgtcagtgtatagaaacggcattcacaaacgttgcagccaagctcagttatcaatgttaaggtactcgtctctcttc |
231 |
Q |
| |
|
||||||| ||||| | | ||| |||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45126 |
ccaaatcgaaaattcatttacgctgtcagtgtttagaaacggcattcacaatcgttgcatccaagctcagttatcaatgttaaggtattcgtctctcttc |
45027 |
T |
|
| Q |
232 |
tctgttccttct |
243 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45026 |
tctgttccttct |
45015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University