View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14414_low_21 (Length: 257)
Name: NF14414_low_21
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 35943193 - 35942971
Alignment:
| Q |
13 |
atcaaccactatcaacatcaacaccatcatccccgttgatttctattgattcctcacatcactaccataaattattttcaaaccttaattttttccagca |
112 |
Q |
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| T |
35943193 |
atcaaccactatcaacagcaacaacattattgccatcgatctctattgattcctcacatcactatcataaattattttcaaaccttaattttttccagca |
35943094 |
T |
|
| Q |
113 |
gcatatgattctagatctgaaagaacnnnnnnnnnnttccaacagcatatgattaaaatcatannnnnnnaaacaacttaattttatggataacacataa |
212 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||| ||||||||| |||||| |
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| T |
35943093 |
gcatatgattctagatctgaaagaac--aaaaaaaattccaacaacatatgattaaaatcattttttgttaaacagcttaatattatggatagaacataa |
35942996 |
T |
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| Q |
213 |
acaaagccagaaaattacaccacca |
237 |
Q |
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||||||||||||||||||||||||| |
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| T |
35942995 |
acaaagccagaaaattacaccacca |
35942971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 29381421 - 29381377
Alignment:
| Q |
61 |
attcctcacatcactaccataaattattttcaaaccttaattttt |
105 |
Q |
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|||||||||||||||||||||||||||||||| | || ||||||| |
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| T |
29381421 |
attcctcacatcactaccataaattattttcagatctgaattttt |
29381377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 17838032 - 17838076
Alignment:
| Q |
61 |
attcctcacatcactaccataaattattttcaaaccttaattttt |
105 |
Q |
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|||| ||||||||||||||||||||||||||| | || ||||||| |
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| T |
17838032 |
attcttcacatcactaccataaattattttcatatctgaattttt |
17838076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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