View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14414_low_26 (Length: 211)

Name: NF14414_low_26
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14414_low_26
NF14414_low_26
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-198)||(57024-57221)
[»] chr6 (52 HSPs)
chr6 (2-198)||(28326734-28326930)
chr6 (2-198)||(28504370-28504566)
chr6 (2-198)||(28296470-28296666)
chr6 (2-198)||(28515407-28515603)
chr6 (2-204)||(28186650-28186852)
chr6 (2-198)||(28244051-28244247)
chr6 (2-198)||(28182374-28182561)
chr6 (2-129)||(28228208-28228335)
chr6 (23-186)||(29842734-29842897)
chr6 (9-182)||(26803709-26803882)
chr6 (2-181)||(26647735-26647914)
chr6 (2-181)||(26753703-26753882)
chr6 (2-183)||(28787494-28787675)
chr6 (2-183)||(28793615-28793796)
chr6 (5-182)||(27603450-27603627)
chr6 (3-180)||(31285816-31285993)
chr6 (2-167)||(28240613-28240774)
chr6 (2-177)||(27705005-27705180)
chr6 (23-186)||(29827263-29827426)
chr6 (2-182)||(26624527-26624707)
chr6 (2-182)||(26730504-26730684)
chr6 (3-179)||(27609869-27610045)
chr6 (3-178)||(27697336-27697511)
chr6 (2-167)||(28140791-28140956)
chr6 (2-159)||(27680206-27680363)
chr6 (2-129)||(26950999-26951126)
chr6 (3-177)||(27426363-27426537)
chr6 (3-181)||(27717246-27717424)
chr6 (3-135)||(26657219-26657351)
chr6 (3-135)||(26763190-26763322)
chr6 (9-135)||(26862843-26862969)
chr6 (66-177)||(27215772-27215883)
chr6 (2-135)||(26978636-26978769)
chr6 (116-177)||(28097194-28097255)
chr6 (85-181)||(2186165-2186261)
chr6 (3-151)||(26812785-26812933)
chr6 (3-135)||(26885324-26885456)
chr6 (69-129)||(28228395-28228455)
chr6 (2-81)||(26849968-26850047)
chr6 (6-185)||(27663957-27664136)
chr6 (23-177)||(25492070-25492224)
chr6 (2-176)||(26825075-26825249)
chr6 (3-181)||(27591768-27591946)
chr6 (3-181)||(27676367-27676545)
chr6 (45-160)||(29469511-29469626)
chr6 (2-48)||(26636902-26636948)
chr6 (2-48)||(26742868-26742914)
chr6 (2-128)||(26960381-26960507)
chr6 (108-180)||(29727698-29727770)
chr6 (113-180)||(29759194-29759261)
chr6 (2-51)||(27336972-27337021)
chr6 (2-51)||(27397712-27397761)
[»] scaffold0038 (4 HSPs)
scaffold0038 (2-198)||(44213-44409)
scaffold0038 (2-129)||(28706-28833)
scaffold0038 (2-167)||(40775-40936)
scaffold0038 (69-129)||(28893-28953)
[»] scaffold1870 (1 HSPs)
scaffold1870 (2-182)||(25-205)
[»] scaffold0277 (2 HSPs)
scaffold0277 (2-182)||(12421-12601)
scaffold0277 (2-182)||(3458-3638)
[»] scaffold0419 (1 HSPs)
scaffold0419 (2-182)||(8743-8923)
[»] chr5 (1 HSPs)
chr5 (2-186)||(16692123-16692307)
[»] chr2 (2 HSPs)
chr2 (2-177)||(3280915-3281090)
chr2 (2-135)||(17992008-17992141)
[»] chr8 (6 HSPs)
chr8 (26-159)||(31906334-31906467)
chr8 (2-135)||(29272631-29272764)
chr8 (51-170)||(35984604-35984723)
chr8 (85-171)||(16450237-16450323)
chr8 (113-180)||(12590108-12590175)
chr8 (104-165)||(16353718-16353779)
[»] chr1 (5 HSPs)
chr1 (3-156)||(28126447-28126600)
chr1 (2-179)||(267089-267266)
chr1 (3-135)||(28132294-28132426)
chr1 (45-186)||(5922211-5922352)
chr1 (2-135)||(26137144-26137277)
[»] chr4 (8 HSPs)
chr4 (3-135)||(18678349-18678481)
chr4 (3-177)||(18075018-18075192)
chr4 (3-135)||(18654266-18654398)
chr4 (3-135)||(18698189-18698321)
chr4 (3-135)||(18730293-18730425)
chr4 (2-167)||(5089711-5089876)
chr4 (3-128)||(18722881-18723006)
chr4 (3-135)||(18688415-18688547)
[»] scaffold0349 (1 HSPs)
scaffold0349 (3-181)||(2286-2464)
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-177)||(60826-61000)


Alignment Details
Target: scaffold0019 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 57221 - 57024
Alignment:
Q  1 cttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  57221 cttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccaagag 57122  T
Q  101 atacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtgatttaaaagaagttga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  57121 atacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttagaaggatgtgatttaaaagaagttga 57024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 52)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 28326734 - 28326930
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||    
T  28326734 ttagaagtagtgggttccaacttgtttggaaagaatatagtagaatgtaaatctgcattatatcagtatgaaaggattcccattaaaaagatccaagcga 28326833  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtgatttaaaagaagttga 198  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||| | ||| || |||| ||| || |||||| ||||    
T  28326834 tacttaaagtaagctttgatgctttggatgaagatgagcagaatgtttttctcgacattgcttgctgcttcaatggatatgaattgaaagaacttga 28326930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 28504370 - 28504566
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||    
T  28504370 ttagaagtagtgggttccaacttgtttggaaagaatatagtagaatgtaaatctgcattatatcagtatgaaaggattcccattaaaaagatccaagcga 28504469  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtgatttaaaagaagttga 198  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||| | ||| || |||| ||| || |||||| ||||    
T  28504470 tacttaaagtaagctttgatgctttggatgaagatgagcagaatgtttttctcgacattgcttgctgcttcaatggatatgaattgaaagaacttga 28504566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 28296666 - 28296470
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||| ||||    
T  28296666 ttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaaatctgcattaagtcagtatgaaaggagacccattagaaagatccaagaga 28296567  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtgatttaaaagaagttga 198  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  |||| | ||| ||||||| ||| || |||||| ||||    
T  28296566 tacttaaagtaagctttgatgctttggaggaagatgagaaaaatgtttttcttgacatcgcttgctgcttcaaaggatatgaattgaaagaacttga 28296470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 28515407 - 28515603
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||| ||||    
T  28515407 ttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaaatctgcattaagtcagtatgaaaggagacccattagaaagatccaagaga 28515506  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtgatttaaaagaagttga 198  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  |||| | ||| ||||||| ||| || |||||| ||||    
T  28515507 tacttaaagtaagctttgatgctttggaggaagatgagaaaaatgtttttcttgacatcgcttgctgcttcaaaggatatgaattgaaagaacttga 28515603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 28186650 - 28186852
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  28186650 ttagaagtagtgggttccaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccgataaaaagatccaagaga 28186749  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtgatttaaaagaagttgatga 201  Q
    |||| |||||||||||||||||||||| |||||  ||  | |||||||||||||||||  |||| | ||| ||||||| ||| || |||||| |||| ||    
T  28186750 tactcaaagtaagctttgatgctttgggggaagcagaacaaaatgtttttctcgacatcgcttgctgcttcaaaggatatgaattgaaagaacttgaaga 28186849  T
Q  202 tgt 204  Q
    |||    
T  28186850 tgt 28186852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 28244051 - 28244247
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||| ||||  ||||||||| ||||||||||| || ||||    
T  28244051 ttagaagtagtgggttcaaacttatttggaaataatataggagaatggaaatctgcattagatcggtatagaaggattccgattaaaaagatacaggaga 28244150  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtgatttaaaagaagttga 198  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| | ||| ||||||| | |||| |||||| ||||    
T  28244151 tacttaaagtaagctttgatgctttggagaaagatgagcagaatgtttttctcgacattgcttgctgcttcaaaggatataatttgaaagaacttga 28244247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 28182374 - 28182561
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||          |||||||||||| ||||||||||| ||||    
T  28182374 ttagaagtagtgggttccaacttgtttggaaagaatatgagagaatcgaaatctgcattaac---------aaggattcccatgaaaaagatccaagaga 28182464  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtgatttaaaagaagttga 198  Q
    |||||||||| |||| ||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||    
T  28182465 tacttaaagttagctatgatgctctggaggatgatgagcagaatgtttttctggacatttcttgtttcttaaaaggatatgatttgaaagaagttga 28182561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 28228208 - 28228335
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||| |||   ||||    
T  28228208 ttagaagtagtgggttcaaacttgtttgggaagaatattgaagaatggaaatctgcattaaatcaggaagaaaggattcccattaaaaatatcatagaga 28228307  T
Q  102 tacttaaagtaagctttgatgctttgga 129  Q
    |||||||| ||||||||||| |||||||    
T  28228308 tacttaaaataagctttgatactttgga 28228335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 29842897 - 29842734
Alignment:
Q  23 ttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagatacttaaagtaagctttgatg 122  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||  ||||||||||||||| | |||| |||||||| | ||||||||| ||||||||||||    
T  29842897 ttgtttggaaagaatatagaagaatggaaatctacattagataggtatgaaaggattcctaataaagagatccacaatatacttaaaataagctttgatg 29842798  T
Q  123 ctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtgattt 186  Q
    ||||||||||||| ||  |   |||||||||||||||| |||||| ||| ||||| | ||||||    
T  29842797 ctttggaggaagacgaacaaggtgtttttctcgacattgcttgttgcttcaaagggtatgattt 29842734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 26803709 - 26803882
Alignment:
Q  9 tagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagatacttaa 108  Q
    |||||||||| ||||||||||||||||  |||  |||||||||   | ||||| ||   ||||||| |||||||| ||||||||||||||||||||||||    
T  26803709 tagtgggttccaacttgtttggaaagagcataaaagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccacgagatacttaa 26803808  T
Q  109 agtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtg 182  Q
    |||||||| ||||||||||||||||||  || ||| ||| ||||| |||||| |||||| ||| ||||||||||    
T  26803809 agtaagctatgatgctttggaggaagagcagcagagtgtctttctagacattgcttgttgcttcaaaggatgtg 26803882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 26647735 - 26647914
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||| |||||||||| ||||| | ||||||||  |||| |||||||||   | ||||| ||   ||||||| |||||||| |||||||||||||||||    
T  26647735 ttagaaatagtgggttccaacttatatggaaagagcatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccacgaga 26647834  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgt 181  Q
    ||||||||||||||| ||||||||||||||||||  || ||| ||| ||||| |||||| |||||| ||| |||||||||    
T  26647835 tacttaaagtaagctatgatgctttggaggaagagcagcagagtgtctttctagacattgcttgttgcttcaaaggatgt 26647914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 26753703 - 26753882
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||| |||||||||| ||||| | ||||||||  |||| |||||||||   | ||||| ||   ||||||| |||||||| |||||||||||||||||    
T  26753703 ttagaaatagtgggttccaacttatatggaaagagcatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccacgaga 26753802  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgt 181  Q
    ||||||||||||||| ||||||||||||||||||  || ||| ||| ||||| |||||| |||||| ||| |||||||||    
T  26753803 tacttaaagtaagctatgatgctttggaggaagagcagcagagtgtctttctagacattgcttgttgcttcaaaggatgt 26753882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 28787494 - 28787675
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||| |||||||||| ||||||||||||||||  |||| |||||||||   | | ||| ||   ||||||| |||||||| |||||||||||||||||    
T  28787494 ttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtactttagatggatatgaaaagattcccaataaaaagatccacgaga 28787593  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtga 183  Q
    ||||||||||||||| ||||||||||||||||||  |  | | ||||||||| |||||| | |||| ||| |||||||||||    
T  28787594 tacttaaagtaagctatgatgctttggaggaagagcaacaaagtgtttttctagacattgcatgttgcttcaaaggatgtga 28787675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 28793615 - 28793796
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||| |||||||||| ||||||||||||||||  |||| |||||||||   | | ||| ||   ||||||| |||||||| |||||||||||||||||    
T  28793615 ttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtactttagatggatatgaaaagattcccaataaaaagatccacgaga 28793714  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtga 183  Q
    ||||||||||||||| ||||||||||||||||||  |  | | ||||||||| |||||| | |||| ||| |||||||||||    
T  28793715 tacttaaagtaagctatgatgctttggaggaagagcaacaaagtgtttttctagacattgcatgttgcttcaaaggatgtga 28793796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 27603627 - 27603450
Alignment:
Q  5 gaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagatac 104  Q
    |||||||||||||| ||||||||||||||||  |||| |||||||||   | | ||| |    ||||| | |||||||| |||||||||||||||||| |    
T  27603627 gaagtagtgggttccaacttgtttggaaagaggatagaagaatggaagggtacgttagaaggatatgagaagattcccaataaaaagatccacgagattc 27603528  T
Q  105 ttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtg 182  Q
    |||||||||||| ||||||||||||||||||  || ||| ||| ||||| |||||| |||||| ||| ||||||||||    
T  27603527 ttaaagtaagctatgatgctttggaggaagagcagcagagtgtctttctagacattgcttgttgcttcaaaggatgtg 27603450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 31285816 - 31285993
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    |||||||||||||||| ||||||||||||||||  |||| | |||||||   | ||||| ||  |||||| | |||||||| |||| |||||||  ||||    
T  31285816 tagaagtagtgggttcaaacttgtttggaaagagcatagaaaaatggaagagtacattagatgggtatgacaagattcccaataaagagatccaaaagat 31285915  T
Q  103 acttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatg 180  Q
    |||||||||||||| |||||||||||| ||||| ||| ||| ||| ||||| |||||| |||||| ||| ||||||||    
T  31285916 acttaaagtaagctatgatgctttggaagaagaggagcagagtgtctttctggacattgcttgttgcttcaaaggatg 31285993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 28240613 - 28240774
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||| ||||| ||||||||||||    |||||||||||||| ||||  ||||| | ||||||||||||||||| | |||| |||||||  |||    
T  28240613 ttagaagtagttggttccaacttgtttggattagatataggagaatgggaatccacattagaccagtatgaaaggattccaaataaagagatccaaaaga 28240712  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtt 167  Q
    ||||||||||    ||||||||||||||| |||||||| | | |||||||||||||||| ||||||    
T  28240713 tacttaaagt----tttgatgctttggagaaagatgagcaaagtgtttttctcgacattgcttgtt 28240774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 177
Target Start/End: Complemental strand, 27705180 - 27705005
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||| ||||||| ||||||||||| ||||| |||| |||||||||   | ||||| ||  |||||| |||||||||| |||| |||||||  |||    
T  27705180 ttagaagtaatgggttctaacttgtttggcaagaacatagaagaatggaagaatacattagatgggtatgacaggattcccaataaagagatccaaaaga 27705081  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaagg 177  Q
    |||||| ||| |||| |||||||||||| ||||| ||| ||| ||| ||||| |||||| |||||| |||||||||    
T  27705080 tacttagagtgagctatgatgctttggaagaagaggagcagagtgtctttcttgacattgcttgttgcttaaaagg 27705005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 29827263 - 29827426
Alignment:
Q  23 ttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagatacttaaagtaagctttgatg 122  Q
    ||||||||||||||||||| |||||||||||||  |||| ||   |||||||||||||| | |||| |||||||  | ||||||||| |||| |||||||    
T  29827263 ttgtttggaaagaatatagaagaatggaaatctatattagatagatatgaaaggattcctaataaagagatccaaaatatacttaaaataagttttgatg 29827362  T
Q  123 ctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtgattt 186  Q
    ||||||||||||||||  |   |||||||||||||||| |||||| ||| ||||| | ||||||    
T  29827363 ctttggaggaagatgaacaaggtgtttttctcgacattgcttgttgcttcaaagggtatgattt 29827426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 26624527 - 26624707
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||| | |||||||| ||||||||||||||||  |||| ||||||||| | | ||||| ||  |||||| |||||||||| |||| |||||||  |||    
T  26624527 ttagaaattgtgggttccaacttgtttggaaagagcatagaagaatggaagtatacattagatgggtatgacaggattcccaataaagagatccaaaaga 26624626  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtg 182  Q
    |||||||||| |||| |||||||||||| ||||| ||| ||| ||| ||||| || ||| |||||| ||  ||||||||||    
T  26624627 tacttaaagtgagctatgatgctttggaagaagaggagcagagtgtctttctagatattgcttgttgctcgaaaggatgtg 26624707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 26730504 - 26730684
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||| | |||||||| ||||||||||||||||  |||| ||||||||| | | ||||| ||  |||||| |||||||||| |||| |||||||  |||    
T  26730504 ttagaaattgtgggttccaacttgtttggaaagagcatagaagaatggaagtatacattagatgggtatgacaggattcccaataaagagatccaaaaga 26730603  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtg 182  Q
    |||||||||| |||| |||||||||||| ||||| ||| ||| ||| ||||| || ||| |||||| ||  ||||||||||    
T  26730604 tacttaaagtgagctatgatgctttggaagaagaggagcagagtgtctttctagatattgcttgttgctcgaaaggatgtg 26730684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 27610045 - 27609869
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    ||||| |||||||||| ||||||||||||||||| ||||  |||||||| | | ||||| ||  |||||| |||||||||| |||| |||||||  ||||    
T  27610045 tagaaatagtgggttctaacttgtttggaaagaacatagaggaatggaagtatacattagatgggtatgacaggattcccaataaagagatccaaaagat 27609946  T
Q  103 acttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggat 179  Q
    ||||||||| |||| |||| ||||||| ||||| ||| | | ||| ||||| |||||| |||||| ||| |||||||    
T  27609945 acttaaagtgagctatgattctttggaagaagaggagcaaagtgtctttctggacattgcttgttgcttcaaaggat 27609869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 27697511 - 27697336
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    ||||| |||||||||| ||||||||||||||||| |||| ||||||||| | |  |||| ||  |||||| |||||||||| |||| |||||||  ||||    
T  27697511 tagaaatagtgggttctaacttgtttggaaagaacatagaagaatggaagtatatattagatgggtatgacaggattcccaataaagagatccaaaagat 27697412  T
Q  103 acttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaagga 178  Q
    ||||| ||| |||| |||||||||||| ||||| ||| | | ||| ||||| |||||| |||||| ||| ||||||    
T  27697411 acttagagtgagctatgatgctttggaagaagaggagcaaagtgtctttctggacattgcttgttgcttcaaagga 27697336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 28140791 - 28140956
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||| ||||| | ||||||||||||| ||| ||  || ||||||||| ||||| ||| |||||||||||||||   |||| || |||   |||    
T  28140791 ttagaagtagttggttctagcttgtttggaaagcataaagatgagtggaaatctacattagatcggtatgaaaggattcctcataaagaggtcctgaaga 28140890  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtt 167  Q
    |||||||||| |||||||||  ||||||| |||||||| | | |||||||||||||||| ||||||    
T  28140891 tacttaaagtgagctttgatagtttggagaaagatgagcaaagtgtttttctcgacattgcttgtt 28140956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 159
Target Start/End: Original strand, 27680206 - 27680363
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| ||||||||||||||||  |||| ||| |||||   | ||||| ||  |||||| |||||||||| |||| |||||||  |||    
T  27680206 ttagaagtagtgggttctaacttgtttggaaagagcatagaagattggaagcatacattagatgggtatgacaggattcccaataaagagatccaaaaga 27680305  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacat 159  Q
    ||||||| || |||| |||||||||||| ||||| ||| ||| ||| ||||| |||||    
T  27680306 tacttaaggtgagctatgatgctttggaagaagaggagcagagtgtctttcttgacat 27680363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 26950999 - 26951126
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||  | |||  |||| || |||||||||| |||||   | || | |||||  |||    
T  26950999 ttagaagtagtgggttctaacttgtttggaaagactatagcagaatgtgagtctttattagataagtatgaaagaattccacatgaagatatccaaaaga 26951098  T
Q  102 tacttaaagtaagctttgatgctttgga 129  Q
    ||||||||||||||||||||||||||||    
T  26951099 tacttaaagtaagctttgatgctttgga 26951126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 177
Target Start/End: Complemental strand, 27426537 - 27426363
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    ||||| |||||||||| ||||||||||||||||| |||| |||||| ||   | ||||| ||  |||||||| |||||||| |||| |||||||    ||    
T  27426537 tagaaatagtgggttctaacttgtttggaaagaacatagaagaatgcaagaatacattagattggtatgaaaagattcccaataaagagatccaaagaat 27426438  T
Q  103 acttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaagg 177  Q
    ||||||||| |||| |||| ||||||||||||| ||| | | ||| ||||| |||||| |||||| ||| |||||    
T  27426437 acttaaagtgagctatgattctttggaggaagaggagcaaagtgtctttctagacattgcttgttgcttcaaagg 27426363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 181
Target Start/End: Complemental strand, 27717424 - 27717246
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    ||||| |||||||||| ||||| | ||||||||| ||||  ||||||||   | ||||| ||  |||||| |||||||||| |||| |||||||  ||||    
T  27717424 tagaaatagtgggttctaacttatctggaaagaacatagaggaatggaagaatacattagatgggtatgacaggattcccaataaagagatccaaaagat 27717325  T
Q  103 acttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgt 181  Q
    |||||||||||| | ||||||||||||||||||  || | | ||| ||||| |||||| |||||| ||| ||| |||||    
T  27717324 acttaaagtaagttatgatgctttggaggaagagcagcaaagtgtctttctagacattgcttgttgcttcaaaagatgt 27717246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 26657219 - 26657351
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    |||||||||||| ||| ||||||||||||||||  || | | |||||||   | ||||| ||   ||||||| |||||||| ||||||||| || |||||    
T  26657219 tagaagtagtggcttcaaacttgtttggaaagagcatcgaaaaatggaagagtacattagatggatatgaaaagattcccaataaaaagattcaagagat 26657318  T
Q  103 acttaaagtaagctttgatgctttggaggaaga 135  Q
    |||||||||||||| ||||| ||||||||||||    
T  26657319 acttaaagtaagctatgatgatttggaggaaga 26657351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 26763190 - 26763322
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    |||||||||||| ||| ||||||||||||||||  || | | |||||||   | ||||| ||   ||||||| |||||||| ||||||||| || |||||    
T  26763190 tagaagtagtggcttcaaacttgtttggaaagagcatcgaaaaatggaagagtacattagatggatatgaaaagattcccaataaaaagattcaagagat 26763289  T
Q  103 acttaaagtaagctttgatgctttggaggaaga 135  Q
    |||||||||||||| ||||| ||||||||||||    
T  26763290 acttaaagtaagctatgatgatttggaggaaga 26763322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 26862843 - 26862969
Alignment:
Q  9 tagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagatacttaa 108  Q
    |||||||||| ||||||||||||||||  || | ||||||| |||   ||||| ||  |||||||| |||||||| |||| |||||||   |||||||||    
T  26862843 tagtgggttctaacttgtttggaaagagcatggaagaatggcaatgcacattagatgggtatgaaaagattcccaataaagagatccaaaggatacttaa 26862942  T
Q  109 agtaagctttgatgctttggaggaaga 135  Q
    |||||||| |||||||||||| |||||    
T  26862943 agtaagctatgatgctttggaagaaga 26862969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 27215772 - 27215883
Alignment:
Q  66 agtatgaaaggattcccattaaaaagatccacgagatacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttg 165  Q
    ||||||||| |||||||| |||| |||||||   |||||||||||| |||| ||||||| |||||||| | ||||||| ||| ||||| |||||| ||||    
T  27215772 agtatgaaaagattcccaataaagagatccaaaggatacttaaagtcagctatgatgctctggaggaaaaggagaagagtgtctttctagacattgcttg 27215871  T
Q  166 tttcttaaaagg 177  Q
    || ||| |||||    
T  27215872 ttgcttcaaagg 27215883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 26978636 - 26978769
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| | |||||||||||||| ||||| ||| ||  | |||  |||| || |||||| ||| |||||   | || | |||||  |||    
T  26978636 ttagaagtagtgggttcaagcttgtttggaaagagtatagcagagtgtgagtctatattagataagtatggaagaattccacctgaacatatccaaaaga 26978735  T
Q  102 tacttaaagtaagctttgatgctttggaggaaga 135  Q
    |||||||||||||||||||||||||||| |||||    
T  26978736 tacttaaagtaagctttgatgctttggacgaaga 26978769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 28097255 - 28097194
Alignment:
Q  116 tttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaagg 177  Q
    ||||||||||||||||||||||||| || |||||||||||||||| |||||| ||| |||||    
T  28097255 tttgatgctttggaggaagatgagaggagtgtttttctcgacattgcttgttgcttcaaagg 28097194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 2186165 - 2186261
Alignment:
Q  85 taaaaagatccacgagatacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgt 181  Q
    |||||| |||||  ||||||||||||| ||||||||||||||| |||| || || |||| | | |||||||||||| ||||||| || |||||||||    
T  2186165 taaaaacatccaacagatacttaaagtcagctttgatgctttgcaggaggaagataagagtctctttctcgacattgcttgttttttcaaaggatgt 2186261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 26812785 - 26812933
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    |||||||||||||||| |||||||||||||||| ||| | ||| ||| ||||| ||||| || ||||||||||||  ||   | || | |||||  | ||    
T  26812785 tagaagtagtgggttccaacttgtttggaaagagtattgaagagtgggaatctacattagataagtatgaaaggacgccacctgaagatatccaaaatat 26812884  T
Q  103 acttaaagtaagctttgatgctttggaggaagatgagaagaatgttttt 151  Q
    | | |||||||||||||||||||||||  |||| || |||| |||||||    
T  26812885 attcaaagtaagctttgatgctttggacaaagaagaaaagagtgttttt 26812933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 26885324 - 26885456
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    ||||| |||||||||| ||||||||||||||||  |||| |  ||||||   | || || ||   ||||||| |||||| | || ||||||||| |||||    
T  26885324 tagaaatagtgggttccaacttgtttggaaagagcatagaaacatggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagagat 26885423  T
Q  103 acttaaagtaagctttgatgctttggaggaaga 135  Q
    |||||||||||||| ||||||||| ||||||||    
T  26885424 acttaaagtaagctatgatgctttagaggaaga 26885456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 28228395 - 28228455
Alignment:
Q  69 atgaaaggattcccattaaaaagatccacgagatacttaaagtaagctttgatgctttgga 129  Q
    |||||||||||||||||||||| |||   |||||||||||| |||||||||||||||||||    
T  28228395 atgaaaggattcccattaaaaatatcacagagatacttaaaataagctttgatgctttgga 28228455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 26849968 - 26850047
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcc 81  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||  | ||| ||||| || |||||||||| |||||    
T  26849968 ttagaagtagtgggttccaacttgtttggaaagagtatagaagaatgcgagtctacattagataagtatgaaagaattcc 26850047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 27664136 - 27663957
Alignment:
Q  6 aagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagatact 105  Q
    ||||||||||||| |||||||||||||||| ||||| ||| ||  | ||  | ||| || |||||||||| |||||   | || | |||||  |||||||    
T  27664136 aagtagtgggttccaacttgtttggaaagagtatagcagattgtgagtcaaccttagataagtatgaaagaattccacctgaagatatccaaaagatact 27664037  T
Q  106 taaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtgatt 185  Q
    |||||||||||||||| ||||||| |||||  |  ||| ||| ||| | || ||| |||||| ||| |||||||||||||    
T  27664036 taaagtaagctttgatactttggaagaagaacaacagagtgtctttttggatattgcttgttgcttcaaaggatgtgatt 27663957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 25492224 - 25492070
Alignment:
Q  23 ttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagatacttaaagtaagctttgatg 122  Q
    ||||||||||| |  |||| ||||||||| | | ||||| || ||||||||| ||||  || |||| |||||||  ||||||||| ||| |||| |||||    
T  25492224 ttgtttggaaatagcatagaagaatggaagtgtacattagatgagtatgaaaagattttcaataaagagatccaaaagatacttagagtgagctatgatg 25492125  T
Q  123 ctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaagg 177  Q
    ||||||||||| | ||| ||| | | ||||| |||||  |||||||||| |||||    
T  25492124 ctttggaggaaaaggagcagagtatctttctagacatgacttgtttcttcaaagg 25492070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 176
Target Start/End: Original strand, 26825075 - 26825249
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||| |||||||||| || |||||||||||||  |||  |  ||||||   ||||||| ||   ||||||||||||||    ||||||||||| ||||    
T  26825075 ttagaaatagtgggttccaatttgtttggaaagagcatacaaatatggaagggtgcattagatggatatgaaaggattcctgacaaaaagatccaagaga 26825174  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaag 176  Q
    |||||| |||||||| |||||||||||| |||||  |  | | |||||| ||||||||| |||||| ||| ||||    
T  26825175 tacttagagtaagctatgatgctttggaagaagagcaacaaagtgttttcctcgacattgcttgttgcttcaaag 26825249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 181
Target Start/End: Complemental strand, 27591946 - 27591768
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    |||||||||||||||| |||||||||||||||| ||| | ||||||  | ||| ||||| || |||||| ||| |||||   |||| | |||||  ||||    
T  27591946 tagaagtagtgggttctaacttgtttggaaagagtattgcagaatgtgagtctacattagataagtatggaagaattccacataaagatatccaaaagat 27591847  T
Q  103 acttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgt 181  Q
    ||||| | | |||| |||||||||||| ||||| ||| ||| ||| ||| | || ||| |||||| | | |||||||||    
T  27591846 acttagactcagctatgatgctttggaagaagaggagcagagtgtctttttggatattgcttgttgcatcaaaggatgt 27591768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 181
Target Start/End: Complemental strand, 27676545 - 27676367
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    |||||||||||||||| |||||||||||||||| ||| | ||||||  | ||| ||||| || |||||| ||| |||||   |||| | |||||  ||||    
T  27676545 tagaagtagtgggttctaacttgtttggaaagagtattgcagaatgtgagtctacattagataagtatggaagaattccacataaagatatccaaaagat 27676446  T
Q  103 acttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgt 181  Q
    ||||| | | |||| |||||||||||| ||||| ||| ||| ||| ||| | || ||| |||||| | | |||||||||    
T  27676445 acttagactgagctatgatgctttggacgaagaggagcagagtgtctttttggatattgcttgttgcatcaaaggatgt 27676367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 29469511 - 29469626
Alignment:
Q  45 aatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagatacttaaagtaagctttgatgctttggaggaagatgagaagaa 144  Q
    |||| |||| ||||||| |||  ||||||||||||||   ||||||||||||   ||||||  || | ||||||||||||||| ||||||| ||||||      
T  29469511 aatgtaaatatgcattagatcgttatgaaaggattcctgataaaaagatccaaacgatactacaacttagctttgatgctttgcaggaagaagagaagtc 29469610  T
Q  145 tgtttttctcgacatt 160  Q
    ||||||||| ||||||    
T  29469611 tgtttttcttgacatt 29469626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 26636902 - 26636948
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatg 48  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  26636902 ttagaagtagtgggttccaacttgtttggaaagagtatagcagaatg 26636948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 26742868 - 26742914
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatg 48  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  26742868 ttagaagtagtgggttccaacttgtttggaaagagtatagcagaatg 26742914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 26960381 - 26960507
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| ||||||||||| |||| ||||| ||||||  | |||  |||| || ||||||| || |||||   | || | |||||  |||    
T  26960381 ttagaagtagtgggttccaacttgtttggcaagagtatagcagaatgtgagtctttattagataagtatgacagaattccacatgaagatatccaaaaga 26960480  T
Q  102 tacttaaagtaagctttgatgctttgg 128  Q
    ||||||||||||||| ||| |||||||    
T  26960481 tacttaaagtaagctatgacgctttgg 26960507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 29727770 - 29727698
Alignment:
Q  108 aagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatg 180  Q
    |||| |||||||||||| ||||||| || ||||||  ||||||||| |||||| |||||| ||| ||||||||    
T  29727770 aagtgagctttgatgctctggaggacgaagagaagtttgtttttcttgacattgcttgttgcttcaaaggatg 29727698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 29759261 - 29759194
Alignment:
Q  113 agctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatg 180  Q
    ||||||||||||||||| || || ||||||  ||||||||| |||||| |||||| ||| ||||||||    
T  29759261 agctttgatgctttggaagacgaagagaagtttgtttttcttgacattgcttgttgctttaaaggatg 29759194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 27337021 - 27336972
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaa 51  Q
    |||||| |||||||||| ||||||||||||||||| |||| || ||||||    
T  27337021 ttagaaatagtgggttctaacttgtttggaaagaacatagaagtatggaa 27336972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 27397761 - 27397712
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaa 51  Q
    |||||| |||||||||| ||||||||||||||||| |||| || ||||||    
T  27397761 ttagaaatagtgggttctaacttgtttggaaagaacatagaagtatggaa 27397712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 117; Significance: 9e-60; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 44213 - 44409
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||| ||||  ||||||||| ||||||||||| || ||||    
T  44213 ttagaagtagtgggttcaaacttatttggaaataatataggagaatggaaatctgcattagatcggtatagaaggattccgattaaaaagatacaggaga 44312  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtgatttaaaagaagttga 198  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| | ||| ||||||| | |||| |||||| ||||    
T  44313 tacttaaagtaagctttgatgctttggagaaagatgagcagaatgtttttctcgacattgcttgctgcttcaaaggatataatttgaaagaacttga 44409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 28706 - 28833
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||| |||   ||||    
T  28706 ttagaagtagtgggttcaaacttgtttgggaagaatattgaagaatggaaatctgcattaaatcaggaagaaaggattcccattaaaaatatcatagaga 28805  T
Q  102 tacttaaagtaagctttgatgctttgga 129  Q
    |||||||| ||||||||||| |||||||    
T  28806 tacttaaaataagctttgatactttgga 28833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 40775 - 40936
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||| ||||| ||||||||||||    |||||||||||||| ||||  ||||| | ||||||||||||||||| | |||| |||||||  |||    
T  40775 ttagaagtagttggttccaacttgtttggattagatataggagaatgggaatccacattagaccagtatgaaaggattccaaataaagagatccaaaaga 40874  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtt 167  Q
    ||||||||||    ||||||||||||||| |||||||| | | |||||||||||||||| ||||||    
T  40875 tacttaaagt----tttgatgctttggagaaagatgagcaaagtgtttttctcgacattgcttgtt 40936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 28893 - 28953
Alignment:
Q  69 atgaaaggattcccattaaaaagatccacgagatacttaaagtaagctttgatgctttgga 129  Q
    |||||||||||||||||||||| |||   |||||||||||| |||||||||||||||||||    
T  28893 atgaaaggattcccattaaaaatatcacagagatacttaaaataagctttgatgctttgga 28953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 25 - 205
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||| |||||||||| ||||||||||||||||  |||| |||||||||   | ||||| ||   ||||||| |||||||| |||||||||||||||||    
T  25 ttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccacgaga 124  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtg 182  Q
    ||||||||||||||| ||||||||||||||||||  || | | ||||||||| |||||| | |||| ||| ||||||||||    
T  125 tacttaaagtaagctatgatgctttggaggaagagcagcaaagtgtttttctagacattgcctgttgcttcaaaggatgtg 205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 182
Target Start/End: Complemental strand, 12601 - 12421
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||| |||||||||| ||||||||||||||||  |||| |||||||||   | ||||| ||   ||||||| |||||||| |||||||||||||||||    
T  12601 ttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccacgaga 12502  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtg 182  Q
    ||||||||||||||| ||||||||||||||||||  || | | ||||||||| |||||| | |||| ||| ||||||||||    
T  12501 tacttaaagtaagctatgatgctttggaggaagagcagcaaagtgtttttctagacattgcctgttgcttcaaaggatgtg 12421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 182
Target Start/End: Complemental strand, 3638 - 3458
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||| |||||||||| ||||||||||||||||  |||| |||||||||   | ||||| ||   ||||||| |||||||| ||||||||||||| |||    
T  3638 ttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccaccaga 3539  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtg 182  Q
    ||||||||||||||| ||||||||||||||||||  || | | ||||||||| |||||| | |||| ||| ||||||||||    
T  3538 tacttaaagtaagctatgatgctttggaggaagagcagcaaagtgtttttctagacattgcctgttgcttcaaaggatgtg 3458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 8743 - 8923
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||| |||||||||| ||||||||||||||||  |||| |||||||||   | ||||| ||   ||||||| |||||||| |||||||||||||||||    
T  8743 ttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccacgaga 8842  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtg 182  Q
    ||||||||||||| | ||||||||||||||||||  || | | ||||||||| |||||| | |||| ||| ||||||||||    
T  8843 tacttaaagtaagttatgatgctttggaggaagagcagcaaagtgtttttctagacattgcctgttgcttcaaaggatgtg 8923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 16692123 - 16692307
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||| || || |||||||||||||||||||||| ||||||||||||| ||||  |||  |||||| |||||||   ||||   || ||| | |    
T  16692123 ttagaagtagtaggatctaacttgtttggaaagaatatagaagaatggaaatctacatttgatcgatatgaatggattcctggtaaacgaattcacaaaa 16692222  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgtgattt 186  Q
    ||||||||||||| ||||||  ||||||||||||||| |||| ||||||| | |||||| |||||| ||| ||||||| ||||||    
T  16692223 tacttaaagtaagttttgatagtttggaggaagatgaaaagagtgtttttttggacattgcttgttgcttcaaaggatatgattt 16692307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 177
Target Start/End: Original strand, 3280915 - 3281090
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||| | ||||| |||||||||||||||||||||  ||| ||||| |||   ||  |||  |||||||||||||| | |||| |||| ||  |||    
T  3280915 ttagaagtattaggttccaacttgtttggaaagaatataaaagagtggaattctttgttggatcgatatgaaaggattcctaataaagagattcagaaga 3281014  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaagg 177  Q
    |||||||||| || |||||||||||||||||||| ||| | | |||||||||||||||| |||||| ||| |||||    
T  3281015 tacttaaagtgagttttgatgctttggaggaagacgagcaaagtgtttttctcgacattgcttgttgctttaaagg 3281090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 17992141 - 17992008
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| |||||||||||||||  | ||| ||| ||||||| ||||||  || ||||||||||||| ||   | || | |||||  | |    
T  17992141 ttagaagtagtgggttccaacttgtttggaaagtgtttagcagattggaaatgtgcattggataagtatgaaaggataccacctgaagatatccaaaata 17992042  T
Q  102 tacttaaagtaagctttgatgctttggaggaaga 135  Q
    |||| ||| |||||||||||||| |||| |||||    
T  17992041 tactaaaaataagctttgatgctctggatgaaga 17992008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 31906334 - 31906467
Alignment:
Q  26 tttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagatacttaaagtaagctttgatgctt 125  Q
    |||||||||||||||  ||||||| ||||||||||| |||  |||||||  ||||| | |||| |||||||  | ||||| |||||||| ||||||||||    
T  31906334 tttggaaagaatatacaagaatgggaatctgcattacatcgatatgaaatcattccaaataaagagatccaaaatatactcaaagtaagttttgatgctt 31906433  T
Q  126 tggaggaagatgagaagaatgtttttctcgacat 159  Q
    |||||||||||||||| | ||||||||| |||||    
T  31906434 tggaggaagatgagaaaagtgtttttcttgacat 31906467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 29272764 - 29272631
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||| |||||||||| ||||||||||||||||  |||| |||||||||   | ||||| ||   ||||||| |||||||| ||||| ||||||| |||    
T  29272764 ttagaaatagtgggttccaacttgtttggaaagaggatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaggatccaccaga 29272665  T
Q  102 tacttaaagtaagctttgatgctttggaggaaga 135  Q
    ||||||||||||| | |||||||||||| |||||    
T  29272664 tacttaaagtaagttatgatgctttggaagaaga 29272631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 170
Target Start/End: Original strand, 35984604 - 35984723
Alignment:
Q  51 aatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagatacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttt 150  Q
    ||||||||||| | | ||||||||  ||||| | |||| | |||||  |||||||||||||||| ||||||||||| |||||||||||| | | ||||||    
T  35984604 aatctgcattacaccggtatgaaaccattcctaataaagacatccaaaagatacttaaagtaagttttgatgctttagaggaagatgagcaaagtgtttt 35984703  T
Q  151 tctcgacatttcttgtttct 170  Q
    ||| |||||| |||||||||    
T  35984704 tcttgacattgcttgtttct 35984723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 16450237 - 16450323
Alignment:
Q  85 taaaaagatccacgagatacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttctt 171  Q
    |||||||||| | || ||||||||||| |||| |||| | ||||| |||||||||| || ||||||||| |||||| ||||||||||    
T  16450237 taaaaagatcaaagacatacttaaagtcagctatgattccttggatgaagatgagaggagtgtttttcttgacattgcttgtttctt 16450323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 12590108 - 12590175
Alignment:
Q  113 agctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatg 180  Q
    ||||||||||||||| ||||||| ||||||  ||||||||| || ||| |||||| ||| ||||||||    
T  12590108 agctttgatgctttgcaggaagaagagaagtctgtttttcttgatattgcttgttgcttcaaaggatg 12590175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 16353779 - 16353718
Alignment:
Q  104 cttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttg 165  Q
    ||||||||||||| || | | ||||| |||||||||||||| |||||||| |||||| ||||    
T  16353779 cttaaagtaagctatgtttccttggatgaagatgagaagaaagtttttcttgacattgcttg 16353718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 28126600 - 28126447
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    ||||| |||||||||| ||||| ||||||||||  |||| |||||||||   | ||||| ||   ||||||| |||||| | |||||||||||| |||||    
T  28126600 tagaaatagtgggttccaacttatttggaaagagcatagaagaatggaagggtacattagatggatatgaaaagattccaaataaaaagatccaagagat 28126501  T
Q  103 acttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcga 156  Q
    | ||||| |||||| |||||||||||||||||||||| | | ||| ||||||||    
T  28126500 atttaaactaagctatgatgctttggaggaagatgagcaaagtgtctttctcga 28126447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 267266 - 267089
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||| | |||||||| ||||||||||||||||  |||| |||||||||   | ||||| ||  |||||| | |||||||| |||| |||||||  |||    
T  267266 ttagaaattgtgggttctaacttgtttggaaagagcatagaagaatggaagggtacattagatgggtatgataagattcccaataaagagatccaaaaga 267167  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggat 179  Q
    |||||||||| |||| ||||| |||||| ||||| ||| ||| ||| ||| | |||||| |||||| ||| |||||||    
T  267166 tacttaaagtgagctatgatggtttggaagaagaggagcagagtgtctttttagacattgcttgttgcttcaaaggat 267089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 28132426 - 28132294
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    ||||| |||||||||| ||||| ||||||||||  |||| ||||||||| | | ||||| ||   ||||||| |||||| | |||||||||||| |||||    
T  28132426 tagaaatagtgggttcaaacttatttggaaagagcatagaagaatggaagtgtacattagatggatatgaaaagattcctaataaaaagatccatgagat 28132327  T
Q  103 acttaaagtaagctttgatgctttggaggaaga 135  Q
    | |||||||||| |  |||||||||||||||||    
T  28132326 atttaaagtaagttacgatgctttggaggaaga 28132294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 5922352 - 5922211
Alignment:
Q  45 aatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagatacttaaagtaagctttgatgctttggaggaagatgagaagaa 144  Q
    |||| |||||| ||||| |||  ||||||||||||||   ||||||||| ||   | | || ||||| ||||||||||||||||| ||||| ||||| |     
T  5922352 aatgtaaatctacattagatcgttatgaaaggattcctgataaaaagatgcaaacgttgctaaaagtgagctttgatgctttggaagaagaagagaaaag 5922253  T
Q  145 tgtttttctcgacatttcttgtttcttaaaaggatgtgattt 186  Q
    ||||||||| || ||| |||||| ||| ||||||| ||||||    
T  5922252 tgtttttcttgatattgcttgttgcttcaaaggatatgattt 5922211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 26137144 - 26137277
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    ||||||||||||||||| | |||||||||||||  || |  ||||||| ||||| ||||| |  ||||||||||||||||   | || | |||||  | |    
T  26137144 ttagaagtagtgggttccagcttgtttggaaagtgtacaacagaatgggaatctacattacagaagtatgaaaggattccacatgaagatatccaaaaca 26137243  T
Q  102 tacttaaagtaagctttgatgctttggaggaaga 135  Q
    |||||| |||||||| |||||||||||| |||||    
T  26137244 tacttagagtaagctatgatgctttggacgaaga 26137277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 18678481 - 18678349
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    |||||||||||||||| ||||||||||||||||||||   ||||||  | ||| ||||| || |||||||||| |||||   | || | |||||  ||||    
T  18678481 tagaagtagtgggttccaacttgtttggaaagaatatttcagaatgtgagtctacattagataagtatgaaagaattccacatgaagatatccaaaagat 18678382  T
Q  103 acttaaagtaagctttgatgctttggaggaaga 135  Q
    ||||||||||||||||||||||||||| |||||    
T  18678381 acttaaagtaagctttgatgctttggacgaaga 18678349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 177
Target Start/End: Original strand, 18075018 - 18075192
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    ||||| |||||||||| ||||||||||||||||| |||| |||||| ||   | ||||| ||  |||||||| |||||||| |||| |||||||    ||    
T  18075018 tagaaatagtgggttctaacttgtttggaaagaacatagaagaatgcaagaatacattagattggtatgaaaagattcccaataaagagatccaaagaat 18075117  T
Q  103 acttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaagg 177  Q
    ||||||||| |||| |||| ||||||||||||| ||| | | ||| ||||| |||||| |||||| ||| |||||    
T  18075118 acttaaagtgagctatgattctttggaggaagaggagcaaagtgtctttctagacattgcttgttgcttcaaagg 18075192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 18654398 - 18654266
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    ||||||| |||||||| |||||||||||||||| ||| | ||||||  ||||| ||||| || |||||||||| |||||   | || | |||||  ||||    
T  18654398 tagaagtcgtgggttccaacttgtttggaaagagtattgcagaatgtgaatctacattagataagtatgaaagaattccacatgaagatatccaaaagat 18654299  T
Q  103 acttaaagtaagctttgatgctttggaggaaga 135  Q
    |||||||||||| |||||||||||||| |||||    
T  18654298 acttaaagtaagttttgatgctttggatgaaga 18654266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 18698321 - 18698189
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    |||||||||||||||| |||||||||||||||| | | | ||||||  | ||| ||||| || |||||||||| |||||   | || | |||||  ||||    
T  18698321 tagaagtagtgggttccaacttgtttggaaagagttttgcagaatgtgactctacattagataagtatgaaagaattccacatgaagatatccaaaagat 18698222  T
Q  103 acttaaagtaagctttgatgctttggaggaaga 135  Q
    ||||||||||||||||||||||||||| |||||    
T  18698221 acttaaagtaagctttgatgctttggacgaaga 18698189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 18730425 - 18730293
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    |||||||||||||||| |||||||||||||||| | | | ||||||  | ||| ||||| || |||||||||| |||||   | || | |||||  ||||    
T  18730425 tagaagtagtgggttccaacttgtttggaaagagttttgcagaatgtgattctacattagataagtatgaaagaattccacatgaagatatccaaaagat 18730326  T
Q  103 acttaaagtaagctttgatgctttggaggaaga 135  Q
    ||||||||||||||||||||||||||| |||||    
T  18730325 acttaaagtaagctttgatgctttggacgaaga 18730293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 167
Target Start/End: Complemental strand, 5089876 - 5089711
Alignment:
Q  2 ttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgaga 101  Q
    |||||||| |||||||| || |||||||||||| |||||| | |||||||||||  | || || |||||||||||||||| | |||| | |||||  |||    
T  5089876 ttagaagttgtgggttccaatttgtttggaaaggatatagaaaaatggaaatctttactagatgagtatgaaaggattcctaataaagaaatccaaaaga 5089777  T
Q  102 tacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtt 167  Q
    |||||| ||| |||||| ||  ||| |  ||| ||||| ||| |||||| ||||||||| ||||||    
T  5089776 tacttatagtgagctttaataatttaggtgaatatgagcagagtgttttcctcgacattgcttgtt 5089711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 18723006 - 18722881
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    |||||||||||||||| |||||||||||||||| ||| | ||||||  | ||| ||||| ||  ||||||||| |||||   | || | |||||  ||||    
T  18723006 tagaagtagtgggttccaacttgtttggaaagagtattgcagaatgtgagtctacattagatatgtatgaaagaattccagatgaagatatccaaaagat 18722907  T
Q  103 acttaaagtaagctttgatgctttgg 128  Q
    ||||||||||||||||||||||||||    
T  18722906 acttaaagtaagctttgatgctttgg 18722881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 18688547 - 18688415
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    |||||||||||||||| |||||||||||||||| |||   ||||||  | ||| ||||| || ||||| |||| ||||| |   || | |||||  ||||    
T  18688547 tagaagtagtgggttccaacttgtttggaaagagtatttcagaatgtgagtctacattagataagtatcaaagaattccaaacgaagatatccaaaagat 18688448  T
Q  103 acttaaagtaagctttgatgctttggaggaaga 135  Q
    ||||||||||||||||||||||||||| |||||    
T  18688447 acttaaagtaagctttgatgctttggacgaaga 18688415  T

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Target: scaffold0349 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 181
Target Start/End: Complemental strand, 2464 - 2286
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    ||||| |||||||||| ||||| | ||||||||| ||||  ||||||||   | ||||| ||  |||||| |||||||||| |||| |||||||  ||||    
T  2464 tagaaatagtgggttctaacttatctggaaagaacatagaggaatggaagaatacattagatgggtatgacaggattcccaataaagagatccaaaagat 2365  T
Q  103 acttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaaggatgt 181  Q
    |||||||||||| | ||||||||||||||||||  || | | ||| ||||| |||||| |||||| ||| ||| |||||    
T  2364 acttaaagtaagttatgatgctttggaggaagagcagcaaagtgtctttctagacattgcttgttgcttcaaaagatgt 2286  T

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Target: scaffold0003 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 177
Target Start/End: Original strand, 60826 - 61000
Alignment:
Q  3 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccacgagat 102  Q
    ||||| |||||||||| ||||||||||||||||| |||| |||||| ||   | ||||| ||  |||||||| |||||||| |||| |||||||    ||    
T  60826 tagaaatagtgggttctaacttgtttggaaagaacatagaagaatgcaagaatacattagattggtatgaaaagattcccaataaagagatccaaagaat 60925  T
Q  103 acttaaagtaagctttgatgctttggaggaagatgagaagaatgtttttctcgacatttcttgtttcttaaaagg 177  Q
    ||||||||| |||| |||| ||||||||||||| ||| | | ||| ||||| |||||| |||||| ||| |||||    
T  60926 acttaaagtgagctatgattctttggaggaagaggagcaaagtgtctttctagacattgcttgttgcttcaaagg 61000  T

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