View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14414_low_27 (Length: 206)
Name: NF14414_low_27
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_low_27 |
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| [»] scaffold0718 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 18066325 - 18066496
Alignment:
| Q |
18 |
caagagaatttcgctaaggtttgtacttgaaactctctgttgtgaacttcaaggagcttaaagttgaataaaaatttcatatatttttgttacagttgta |
117 |
Q |
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| T |
18066325 |
caagagaatttcgctaaggtttgtacttgaaactctctgttgtgaacttcaaggagcttaaagttgaataaaaatttcatatatttttgttacagttgta |
18066424 |
T |
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| Q |
118 |
tgatgcttggaaaatgtatagagttggtcatcaaatatgaattttatgttatttttaatgtttttctggttc |
189 |
Q |
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| T |
18066425 |
tgatgcttgggaaatgtatagagttggtcatcaaatatgagttttatgttatttttaatgtttttctggttc |
18066496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0718 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0718
Description:
Target: scaffold0718; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 3670 - 3534
Alignment:
| Q |
18 |
caagagaatttcgctaaggtttgtacttgaaactctctgttgtgaacttcaaggagcttaaagttgaataaaaatttcatatatttt-tgttacagttgt |
116 |
Q |
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||||||| ||| |||||| |||| |||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||| |||| |||||| ||||| |
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| T |
3670 |
caagagacttttgctaagctttggacttaaaactctttgttgtttacttcaagtggcttaaagttgaataaaaatttcatattttttgtgttacggttgt |
3571 |
T |
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| Q |
117 |
atgatgcttggaaaatgt-atagagttggtcatcaaa |
152 |
Q |
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| T |
3570 |
ttgctcctcggaaaatgtcttagagttggttatcaaa |
3534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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