View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14414_low_4 (Length: 528)

Name: NF14414_low_4
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14414_low_4
NF14414_low_4
[»] chr8 (4 HSPs)
chr8 (16-285)||(41734937-41735207)
chr8 (284-512)||(41734061-41734293)
chr8 (422-463)||(3681628-3681669)
chr8 (422-462)||(45261444-45261484)
[»] chr5 (3 HSPs)
chr5 (422-464)||(28581186-28581228)
chr5 (424-462)||(2263711-2263749)
chr5 (423-464)||(27651552-27651593)
[»] chr6 (2 HSPs)
chr6 (423-467)||(9408334-9408378)
chr6 (422-462)||(11713666-11713706)
[»] chr7 (1 HSPs)
chr7 (415-462)||(22062427-22062474)
[»] chr4 (4 HSPs)
chr4 (422-457)||(22050244-22050279)
chr4 (423-464)||(41897575-41897616)
chr4 (423-456)||(53807430-53807463)
chr4 (422-462)||(17872090-17872130)
[»] chr3 (2 HSPs)
chr3 (423-466)||(51772888-51772931)
chr3 (423-464)||(552172-552213)
[»] chr2 (1 HSPs)
chr2 (423-460)||(7772482-7772519)
[»] scaffold0999 (1 HSPs)
scaffold0999 (422-462)||(2178-2218)
[»] chr1 (1 HSPs)
chr1 (423-463)||(43843890-43843930)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 41735207 - 41734937
Alignment:
Q  16 acatttgtcattaaaataaataaattattgtttggagaccgatttattttgtaagcgtagtttaatgaaatggttgcttataatcttcgctaaggaaacc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41735207 acatttgtcattaaaataaataaattattgtttggagaccgatttattttgtaagcgtagtttaatgaaatggttgcttataatcttcgctaaggaaacc 41735108  T
Q  116 atatataatgccaaatattatcatttttatgttggcataccattgatcctttaaatttttaatgaaatgaatttctttgccattataaaaa-acattgaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41735107 atatataatgccaaatattatcatttttatgttggcataccattgatcctttaaatttttaatgaaatgaatttctttgccattataaaaatacattgaa 41735008  T
Q  215 agtgatataaaaagggagatatatgacatcattgtctgcgacgaatttagggaggggcagacgtggatgaa 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41735007 agtgatataaaaagggagatatatgacatcattgtctgcgacgaatttagggaggggcagacgtggatgaa 41734937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 284 - 512
Target Start/End: Complemental strand, 41734293 - 41734061
Alignment:
Q  284 aaattatgtttgcaactatccgnnnnnnnnatcattaggtgaattttttggtcgaatttagtctagctataaacaatttacctttttaaaacaaataagt 383  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  41734293 aaattatgtttgcaactatccgtttttt--atcattaggtgaattttttggtcgaatttagtctagttataaacaatttacttttttaaaacaaataagt 41734196  T
Q  384 gggatgttcgaggttcaaaacctgattcctacatatattatatattatgcaatatccttaccaattaagttaagctcacaa------aaacgtgtgaact 477  Q
    ||| ||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||      |||||||||||||    
T  41734195 ggggtgtccgaggttcaaaacccgattcctatatatattatatattatgcaatatccctaccaattaagttaagctcacaaaaacaaaaacgtgtgaact 41734096  T
Q  478 acccatttaacgtggcaattgtgtatgtgctacgt 512  Q
    |||||||||||||||||||||||||||||||||||    
T  41734095 acccatttaacgtggcaattgtgtatgtgctacgt 41734061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 3681669 - 3681628
Alignment:
Q  422 tatatattatgcaatatccttaccaattaagttaagctcaca 463  Q
    ||||||||||| | ||||||||||||||||| ||||||||||    
T  3681669 tatatattatgaattatccttaccaattaagataagctcaca 3681628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 45261444 - 45261484
Alignment:
Q  422 tatatattatgcaatatccttaccaattaagttaagctcac 462  Q
    ||||||||||||||||||| |||||||| ||||| ||||||    
T  45261444 tatatattatgcaatatccctaccaattgagttatgctcac 45261484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 464
Target Start/End: Complemental strand, 28581228 - 28581186
Alignment:
Q  422 tatatattatgcaatatccttaccaattaagttaagctcacaa 464  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  28581228 tatataatatgcaatatccctaccaattaagttaagctcacaa 28581186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 462
Target Start/End: Complemental strand, 2263749 - 2263711
Alignment:
Q  424 tatattatgcaatatccttaccaattaagttaagctcac 462  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  2263749 tatattatgcaatgttcttaccaattaagttaagctcac 2263711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 27651552 - 27651593
Alignment:
Q  423 atatattatgcaatatccttaccaattaagttaagctcacaa 464  Q
    |||||||||||| | |||||||||| ||||||||||||||||    
T  27651552 atatattatgcattgtccttaccaactaagttaagctcacaa 27651593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 467
Target Start/End: Complemental strand, 9408378 - 9408334
Alignment:
Q  423 atatattatgcaatatccttaccaattaagttaagctcacaaaaa 467  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||    
T  9408378 atatattatgcaatatctttaccaattaagttaaactcacgaaaa 9408334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 11713706 - 11713666
Alignment:
Q  422 tatatattatgcaatatccttaccaattaagttaagctcac 462  Q
    ||||||||||||| |||||||||||||| | ||||||||||    
T  11713706 tatatattatgcattatccttaccaattgatttaagctcac 11713666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 462
Target Start/End: Original strand, 22062427 - 22062474
Alignment:
Q  415 catatattatatattatgcaatatccttaccaattaagttaagctcac 462  Q
    |||||||||||||||||| | | |||||||||||| ||||||||||||    
T  22062427 catatattatatattatgtattgtccttaccaattgagttaagctcac 22062474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 457
Target Start/End: Complemental strand, 22050279 - 22050244
Alignment:
Q  422 tatatattatgcaatatccttaccaattaagttaag 457  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22050279 tatatattatgcaatatccctaccaattaagttaag 22050244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 41897575 - 41897616
Alignment:
Q  423 atatattatgcaatatccttaccaattaagttaagctcacaa 464  Q
    |||||||||||||||||| |||||| |||||||| |||||||    
T  41897575 atatattatgcaatatccctaccaactaagttaatctcacaa 41897616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 456
Target Start/End: Complemental strand, 53807463 - 53807430
Alignment:
Q  423 atatattatgcaatatccttaccaattaagttaa 456  Q
    ||||||||||||||||||||| ||||||||||||    
T  53807463 atatattatgcaatatccttatcaattaagttaa 53807430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 17872130 - 17872090
Alignment:
Q  422 tatatattatgcaatatccttaccaattaagttaagctcac 462  Q
    |||||| |||||||||||| ||||||||||| |||||||||    
T  17872130 tatatactatgcaatatccctaccaattaagctaagctcac 17872090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 466
Target Start/End: Complemental strand, 51772931 - 51772888
Alignment:
Q  423 atatattatgcaatatccttaccaattaagttaagctcacaaaa 466  Q
    ||||| |||||||||||| |||||| ||||||||||||||||||    
T  51772931 atataatatgcaatatccctaccaactaagttaagctcacaaaa 51772888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Complemental strand, 552213 - 552172
Alignment:
Q  423 atatattatgcaatatccttaccaattaagttaagctcacaa 464  Q
    |||||||||||||||||| |||||| | ||||||||||||||    
T  552213 atatattatgcaatatccctaccaactgagttaagctcacaa 552172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 460
Target Start/End: Original strand, 7772482 - 7772519
Alignment:
Q  423 atatattatgcaatatccttaccaattaagttaagctc 460  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  7772482 atatattatgcattatccttaccaattgagttaagctc 7772519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0999 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 2218 - 2178
Alignment:
Q  422 tatatattatgcaatatccttaccaattaagttaagctcac 462  Q
    ||||||||||| ||||||| ||||||||||||||| |||||    
T  2218 tatatattatgtaatatccctaccaattaagttaaactcac 2178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 463
Target Start/End: Complemental strand, 43843930 - 43843890
Alignment:
Q  423 atatattatgcaatatccttaccaattaagttaagctcaca 463  Q
    |||||||||||| | |||||||||| |||||||||||||||    
T  43843930 atatattatgcattgtccttaccaactaagttaagctcaca 43843890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University