View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14414_low_6 (Length: 460)
Name: NF14414_low_6
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 440
Target Start/End: Complemental strand, 52860738 - 52860317
Alignment:
| Q |
19 |
cagagagaaagttacgagcaaggttgagaatttgaaggttggtgagggtgagaagtgaagaagggagataaccagagagagagttgttgtgaagataaac |
118 |
Q |
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| T |
52860738 |
cagagagaaagttacgagcaaggttgagaatttgaagattggtgagggtgagaagtgaaggagggagataaccagagagagagttgttgtgaagataaac |
52860639 |
T |
|
| Q |
119 |
agcacgtaggaagagacaatgagaaagagaagaaggtattgatgagttaaggttgttggaatggagactaagtttacgaagctgtgagagattagagagt |
218 |
Q |
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| T |
52860638 |
agcacgtaggaagagacaatgagaaagagaagaaggtattgatgagttaaggttgttggaatggagactaagtttacgaagctgtgagagattagagagt |
52860539 |
T |
|
| Q |
219 |
gatgaagatattgaaccagtgagttgaagacgaggtaaacgtatagtgtgaactctgttattgttgttgtaacagagaatgccatgccaatcacatggtg |
318 |
Q |
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| T |
52860538 |
gatgaagatattgaaccagtgagttgaagacgaggtaaacgtatagtgtgaactctgttattgttgttgtaacagagaatgccatgccaatcacatggtg |
52860439 |
T |
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| Q |
319 |
ctgaaggtgttgatggatcccaagttgttaaggcattgagtgggtcaagaaggtttagtttgaagattgttaaggcttggatttcggaatgagatgagtt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860438 |
ctgaaggtgttgatggatcccaagttgttaaggcattgagtgggtcaagaaggtttagtttgaagattgttaaggcttggatttcggaatgagatgagtt |
52860339 |
T |
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| Q |
419 |
gatttgtgttgctgctgctgct |
440 |
Q |
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| T |
52860338 |
gatttgtgttgctgcagctgct |
52860317 |
T |
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