View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14414_low_7 (Length: 440)
Name: NF14414_low_7
Description: NF14414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14414_low_7 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 39 - 384
Target Start/End: Complemental strand, 7472053 - 7471702
Alignment:
| Q |
39 |
atgtgtgaaacaccatgtaagagacggggatgaatgaaacacttttnnnnnnncgtgttctttttaacacgagaagtgaatgcaaatacatggatagagc |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7472053 |
atgtgtgaaacaccatgtaagagacggggacgaatgaaacacttttaaaaaaacgtgttctttttaacacgagaagtgaatgcaaatacatggatagagc |
7471954 |
T |
|
| Q |
139 |
cgctcgaaatcccaatacttccaaattttatacaaatgtaacataaaatgaaaa-gagaagaatagaggcaat------gtgatttcattaagaaaaaca |
231 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| ||||||||||||||||||||| ||||||| | || || ||||||||||||||||||| | |
|
|
| T |
7471953 |
cgctcgaaattccaatacttccaatttttataaaaatgtaacataaaatgaaaaagagaaga-tggaaatgattttgttgtgatttcattaagaaaaata |
7471855 |
T |
|
| Q |
232 |
gaggcaatgtatatacaaatacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattcttacacgattgtta |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7471854 |
gaggcaatgtatatacaaatacatatctctaattttatggttatgctcctataactcaacaatctattcctacaatcaaactattcttatacgattgtta |
7471755 |
T |
|
| Q |
332 |
ccatatttacggcatgaatcatggaatatacttggctttcctaatactccccc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
7471754 |
ccatatttacggcatgaatcatggaatatacttggctttccttatacttcccc |
7471702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 19665838 - 19665915
Alignment:
| Q |
241 |
tatatacaaatacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattct |
318 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| ||||||| |||| |||| ||||||||||||| |||||| ||||||| |
|
|
| T |
19665838 |
tatacacaaatacatatctctaatttgatgattatgcttctatagctcatcaatctattcctataatcaagctattct |
19665915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 420
Target Start/End: Original strand, 19665988 - 19666062
Alignment:
| Q |
347 |
gaatcatggaatatacttggctttcctaatactccccc-caagttagtgagtggatatcaagaactcccagcttg |
420 |
Q |
| |
|
||||||| ||||||| ||| ||||||||| ||||||| |||||||| |||||||||| ||||||||||| |||| |
|
|
| T |
19665988 |
gaatcatagaatataattgactttcctaacactccccgtcaagttagagagtggatattaagaactcccaacttg |
19666062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 5682 - 5599
Alignment:
| Q |
235 |
gcaatgtatatacaaatacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattct |
318 |
Q |
| |
|
||||| |||| ||| ||||||||||||||| | ||| ||||||| ||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
5682 |
gcaatatatacacagatacatatctctaatgtgatgattatgctgttataactcagcaatatattcctacaatcaagctattct |
5599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 47753178 - 47753095
Alignment:
| Q |
235 |
gcaatgtatatacaaatacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattct |
318 |
Q |
| |
|
||||| |||| ||| ||||||||||||||| | || ||||||| ||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
47753178 |
gcaatatatacacatatacatatctctaatgtgttgattatgctgttataactcagcaatatattcctacaatcaagctattct |
47753095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 39037169 - 39037237
Alignment:
| Q |
250 |
atacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattct |
318 |
Q |
| |
|
||||||||||||||| | || ||||||| ||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
39037169 |
atacatatctctaatgtgttgattatgctgttataactcagcaatatattcctacaatcaagctattct |
39037237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University