View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14415_high_11 (Length: 327)
Name: NF14415_high_11
Description: NF14415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14415_high_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 33950065 - 33950389
Alignment:
| Q |
1 |
gtatcttatttgaatatttcaaatttaataaatatgattagttttagataagtttcatgaatgattgtcaatattttaaaataataatgtcaaatacaat |
100 |
Q |
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| T |
33950065 |
gtatcttatttgaatatttcaaatttaataaatatgattagttttagataagtttcatgaatgatcgtcaatattttaaaataataatgtcaaatacaat |
33950164 |
T |
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| Q |
101 |
gtacaatcgcggcgtaaaagaataaacaaaacatggtatgaattgtacatttgtttatttttatggtgaaatggcctactgaataatgccacacgttaac |
200 |
Q |
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| T |
33950165 |
gtacaatcgcggcgtaaaagaataaacaaaacatggtatgaattgtacatttgtttatttttatggtgaaatggcctactgaataatgccacacgttaac |
33950264 |
T |
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| Q |
201 |
atnnnnnnnccaaattttaatgagtaagtaacacataaccaagtttgtttgtttctgacaaaacagcg-tccgaatatttaagtnnnnnnngacaaagaa |
299 |
Q |
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|| ||| ||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||| ||||||||| |
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| T |
33950265 |
ataaaaaaaccatattttaacgagta---cacacattaccaagtttgtttctttcttacaaaacagcgttccgaatatttaagtaaaaaaagacaaagaa |
33950361 |
T |
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| Q |
300 |
aggaaagaataacgaagattagtacgta |
327 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
33950362 |
aggaaagaataacgaagattagtacgta |
33950389 |
T |
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