View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14415_high_5 (Length: 420)
Name: NF14415_high_5
Description: NF14415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14415_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 27 - 403
Target Start/End: Original strand, 37687435 - 37687821
Alignment:
| Q |
27 |
ttcaattaaattcatgcaattggtattttgattttgagatgatgaaggcatggttggaaaatttcaaccactgtgctatatgagtgttttttagatgatt |
126 |
Q |
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| T |
37687435 |
ttcaattaaattcatgcaattggtgttttgattttgagatgatgaaggcatggttggaaaatttcaaccaccgtgctatatgagtgttttttagatgatt |
37687534 |
T |
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| Q |
127 |
ttgacaattagtttcttgttagtggatttgtaac-aaaaaattggatagtgtttttggtaattggtttggtgttgtatgaatcaatatatatatcccttc |
225 |
Q |
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| T |
37687535 |
ttgacaattagtttcttgttagtggatttgtaacaaaaaaattggatagtgtttttggtaattggcttggtgttgtatgaatcaatatatatgtcccttc |
37687634 |
T |
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| Q |
226 |
ttacgttctca------atatcacatatgactgttcatcttataaaaaatgtatacgattgttgactttattggtaacgtcgtagggtttacaata-nnn |
318 |
Q |
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| T |
37687635 |
ttacgttctcacacacgatctcatatatgactgttcatcttataaaaaatgcatacaattgttgactttattggcaacgttgtagggtttacgatatttt |
37687734 |
T |
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| Q |
319 |
nnnnnct--ctataaatatgttgttcattctctaaacgatttgattcatttcattacacaaccacacatttatctttaagaagttct |
403 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37687735 |
tttttcttcctataaatatgttgttcattctctaaacgatttgattcatttcattacacaaccacacatttatctttaagaagttct |
37687821 |
T |
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