View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14415_low_10 (Length: 329)
Name: NF14415_low_10
Description: NF14415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14415_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 73 - 311
Target Start/End: Complemental strand, 4052978 - 4052740
Alignment:
| Q |
73 |
ccgagttattattaattaatgccgatcctctcatatctataggaaaggaaaatagaaaagttaaacttggaatcaataatgcaacaagcatatgtttatg |
172 |
Q |
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| T |
4052978 |
ccgagttattattaattaatgccgatcctctcatatctataggaaaggaaaatagaaaagttaaacttggaatcaataatgcaacaagcatatgtttatg |
4052879 |
T |
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| Q |
173 |
ttatacaacatccttcctgtccaacaaaaaagggtaagtcaagagaatctaatactcatattcttcaatattttcttaccctttgtggtatatatcccac |
272 |
Q |
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| T |
4052878 |
ttatacaacatccttcctgtccaacaaaaaagggtaagtcaagagaatctaatactcatattcttcaatattttcttaccctttgtggtatatatcccac |
4052779 |
T |
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| Q |
273 |
atcatatcacgattacacgtataagatatagaggttgct |
311 |
Q |
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| T |
4052778 |
atcatatcacgattacacgtataagatatagaggttgct |
4052740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 4046594 - 4046540
Alignment:
| Q |
179 |
aacatccttcctgtccaacaaaaaagggtaagtcaagagaatctaatactcatat |
233 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4046594 |
aacatccttcttgtccaacaaaaaagggtaagtcaagataatctaatactcatat |
4046540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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