View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14415_low_14 (Length: 301)
Name: NF14415_low_14
Description: NF14415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14415_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 2006329 - 2006608
Alignment:
| Q |
18 |
ctatttcccaaagaaaatactgcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttagatcaatatttactatatca |
117 |
Q |
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| T |
2006329 |
ctatttcccaaagaaaatactgcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttagatcaatatttactatatca |
2006428 |
T |
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| Q |
118 |
aatatgttagtgaaagattttcctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttctatggtctgcaaga |
217 |
Q |
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| T |
2006429 |
aatatattagtgaaagattttcctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttctatggtctgcaaga |
2006528 |
T |
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| Q |
218 |
aattcctttccattacaaaccgagttaaagtctctctaacagtacatgatcccactgttccattccttcctatgctactc |
297 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2006529 |
aattcctttccattacaaaccgagttaaagcatctctaacagtacatgatcccactgttccattccttcctcggctactc |
2006608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 96 - 285
Target Start/End: Complemental strand, 1743975 - 1743786
Alignment:
| Q |
96 |
tagatcaatatttactatatcaaatatgttagtgaaagattttcctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggag |
195 |
Q |
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| T |
1743975 |
tagatcaacatttattatatcaaatatgttattgaaagattttcctcaagaatgttgggaatcaatcttcaaattccttggccaaggaaaagatttggag |
1743876 |
T |
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| Q |
196 |
tctgtttctatggtctgcaagaaattcctttccattacaaaccgagttaaagtctctctaacagtacatgatcccactgttccattcctt |
285 |
Q |
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| T |
1743875 |
tctgtttctatggtctgcaagaaattcctttccattacaaaccaagtgaaattttctttaacaatacatgattccactattctattcctt |
1743786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 1498231 - 1498300
Alignment:
| Q |
168 |
attccttggccaaggagatgatttggagtctgtttctatggtctgcaagaaattcctttccattacaaac |
237 |
Q |
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| T |
1498231 |
attccttggccaaagaagtaatttgaagtctgtttttatggtttgcaagaaattccattacattaaaaac |
1498300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 25419878 - 25419804
Alignment:
| Q |
25 |
ccaaagaaaatactgcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttaga |
99 |
Q |
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| T |
25419878 |
ccaaagaaaatactgcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttaga |
25419804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 5373600 - 5373518
Alignment:
| Q |
18 |
ctatttcccaaagaaaatactgcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttagat |
100 |
Q |
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||||||| || |||||||| || | || |||||||| |||||||||||| |||||||||| ||| || |||||||| ||||| |
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| T |
5373600 |
ctatttcacagagaaaatattgtcttgatttgcttgaatcctcaggtcttctaggtgccaaacctacttctacacctctagat |
5373518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 44577331 - 44577455
Alignment:
| Q |
118 |
aatatgttagtgaaagatttt-cctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttc----tatggtctg |
212 |
Q |
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||||||||||||||| |||| ||| ||||||| | ||||||| |||| | ||||||| | ||| || |||||||||||| |||||| ||| ||||| |
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| T |
44577331 |
aatatgttagtgaaatttttttcctgaagaatgctaggaatcagtcttcaaattccttagacaaagacatgatttggagtttgtttcaatatattgtctg |
44577430 |
T |
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| Q |
213 |
caagaaattcctttccattacaaac |
237 |
Q |
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|||| ||||| ||| |||||||||| |
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| T |
44577431 |
caagcaattcgtttacattacaaac |
44577455 |
T |
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