View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14415_low_19 (Length: 236)
Name: NF14415_low_19
Description: NF14415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14415_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 1433012 - 1433228
Alignment:
| Q |
3 |
ggaataaaactgcaatcgataagacataatagcatatattcatttatttaaacggtaacttcttccacgaaaagcaattccatcaccctgattttgctgc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1433012 |
ggaataaaactgcaatcgataagacatattagcatatattcatttatttaaacggtaacttcttccacgaaaagcaattccatcaccctgattttgctgc |
1433111 |
T |
|
| Q |
103 |
tgaggtgaagaagcattaatgccggttgtttcctgtgaagtgcttcttgttgttgtttgatttccaccaagacggttgcttcttcctttgaatataattc |
202 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1433112 |
tgaggtgaagaagcattaatgccgcttgtttcctgtgaagtgcttcttgttgttgtttgatttccaccaagacggttgcttcttcctttgaatataattc |
1433211 |
T |
|
| Q |
203 |
cagctgatggattagat |
219 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1433212 |
cagctgatggattagat |
1433228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 217
Target Start/End: Original strand, 1421806 - 1421977
Alignment:
| Q |
48 |
atttaaacggtaacttcttccacgaaaagcaattccatcaccctgattttgctgctgaggtgaagaagcattaatgccggttgtttcctgtgaagt---- |
143 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| ||| |||||| | | ||||| |
|
|
| T |
1421806 |
atttaaatggtaacttcttccacgaaaagtaat-ccatcaccctgattttgctgctgagcggaagaagcat---tgctacttgtttgccgcgaagtactt |
1421901 |
T |
|
| Q |
144 |
--gcttcttgttgttgtttgatttccaccaagacggttgcttcttcctttgaatataattccagctgatggattag |
217 |
Q |
| |
|
|||| | ||| || |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1421902 |
cgccttcatcttgctgcttgagttccagcaagacggttgcttcttcctctgaatataattccagctgatggattag |
1421977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University