View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14415_low_4 (Length: 480)
Name: NF14415_low_4
Description: NF14415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14415_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 207 - 464
Target Start/End: Complemental strand, 52518952 - 52518695
Alignment:
| Q |
207 |
ctaagggctgaatatattaagttttgaatggcatcaatatcttgttttagtaagagtccattgcccatgaaagagacagctttgagccatggtgaatatc |
306 |
Q |
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| T |
52518952 |
ctaagggctgaatatattaagttgtgaatggcatcaacatcttgttttagtaagagtccattacccatgaaagagacagctttgagccatggtgaatatc |
52518853 |
T |
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| Q |
307 |
ctccacctatggcaacttatgaggaggttgtagacaatcccaagctcttcatactttgcttggagaagctccacactctaatgggcaccaagttcatgta |
406 |
Q |
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| T |
52518852 |
ctccacctatggcaacttatgaggaggttgtagacaatcccaagctcttcatactttgcttggagaagctccacactctaatgggcaccaagttcatgta |
52518753 |
T |
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| Q |
407 |
agctccctggatttataaactacaaactagagattgtgacttggtttacttttatatt |
464 |
Q |
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| T |
52518752 |
agctccctggatttataaactacgaactagagattgtgacttggtttacttttatatt |
52518695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 52519140 - 52519100
Alignment:
| Q |
14 |
attattctcattaatgtttttgttttccctatctacaaata |
54 |
Q |
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| T |
52519140 |
attattctcattaatgtttttgttttccctatctacaaata |
52519100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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