View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14415_low_5 (Length: 438)

Name: NF14415_low_5
Description: NF14415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14415_low_5
NF14415_low_5
[»] scaffold0432 (1 HSPs)
scaffold0432 (1-140)||(6405-6544)
[»] chr2 (28 HSPs)
chr2 (5-140)||(30831805-30831940)
chr2 (11-139)||(26480976-26481104)
chr2 (5-110)||(37003661-37003766)
chr2 (5-140)||(11965844-11965979)
chr2 (5-143)||(37316697-37316835)
chr2 (5-138)||(37731087-37731220)
chr2 (12-143)||(18510733-18510864)
chr2 (34-140)||(36587356-36587462)
chr2 (15-138)||(44239097-44239220)
chr2 (34-140)||(14871951-14872057)
chr2 (5-139)||(31578485-31578619)
chr2 (48-140)||(14877083-14877175)
chr2 (11-135)||(8847544-8847669)
chr2 (5-86)||(19916706-19916787)
chr2 (15-129)||(39234076-39234190)
chr2 (5-66)||(9207640-9207701)
chr2 (29-66)||(19109053-19109090)
chr2 (11-63)||(1040570-1040622)
chr2 (42-138)||(1079010-1079106)
chr2 (5-69)||(18254166-18254230)
chr2 (5-61)||(29449262-29449318)
chr2 (32-66)||(34945050-34945084)
chr2 (77-138)||(2427886-2427947)
chr2 (15-88)||(7698231-7698304)
chr2 (1-70)||(13711322-13711391)
chr2 (5-94)||(43057115-43057204)
chr2 (5-73)||(32944456-32944524)
chr2 (5-61)||(36802947-36803002)
[»] chr1 (19 HSPs)
chr1 (5-140)||(4213123-4213258)
chr1 (5-134)||(7918953-7919082)
chr1 (5-140)||(40439725-40439860)
chr1 (5-140)||(48983553-48983688)
chr1 (5-94)||(17082674-17082763)
chr1 (32-141)||(47642491-47642600)
chr1 (5-138)||(48858874-48859007)
chr1 (34-138)||(5771631-5771735)
chr1 (16-131)||(4857972-4858087)
chr1 (16-138)||(38878788-38878910)
chr1 (11-63)||(33076176-33076228)
chr1 (11-66)||(35369756-35369811)
chr1 (5-148)||(42468643-42468786)
chr1 (36-66)||(4776837-4776867)
chr1 (1-51)||(49660226-49660276)
chr1 (1-66)||(23645457-23645522)
chr1 (5-66)||(31088231-31088292)
chr1 (1-70)||(43560251-43560320)
chr1 (11-63)||(9988008-9988060)
[»] chr6 (13 HSPs)
chr6 (5-140)||(11635420-11635555)
chr6 (36-138)||(17182180-17182282)
chr6 (34-140)||(1286993-1287099)
chr6 (5-140)||(18064975-18065110)
chr6 (5-147)||(33712371-33712513)
chr6 (5-138)||(8645359-8645492)
chr6 (11-140)||(5739649-5739778)
chr6 (11-69)||(1156776-1156834)
chr6 (1-70)||(10335597-10335666)
chr6 (29-94)||(14910251-14910316)
chr6 (29-63)||(31869142-31869176)
chr6 (34-66)||(12588335-12588367)
chr6 (5-65)||(25811799-25811859)
[»] chr3 (33 HSPs)
chr3 (5-135)||(27168572-27168702)
chr3 (5-141)||(33472303-33472439)
chr3 (11-138)||(34307428-34307555)
chr3 (17-130)||(9862596-9862709)
chr3 (33-139)||(29525942-29526048)
chr3 (12-134)||(38671675-38671797)
chr3 (15-140)||(39713922-39714047)
chr3 (32-140)||(4494122-4494230)
chr3 (1-140)||(32362980-32363117)
chr3 (17-140)||(31104727-31104850)
chr3 (5-140)||(41443076-41443211)
chr3 (32-130)||(9692803-9692901)
chr3 (1-107)||(34064024-34064130)
chr3 (1-56)||(48152255-48152310)
chr3 (32-138)||(34456868-34456974)
chr3 (5-66)||(5244279-5244340)
chr3 (5-69)||(288776-288840)
chr3 (34-136)||(25188313-25188416)
chr3 (5-60)||(50314675-50314730)
chr3 (29-63)||(16479707-16479741)
chr3 (32-66)||(20547950-20547984)
chr3 (1-63)||(28700507-28700569)
chr3 (29-63)||(36756013-36756047)
chr3 (32-66)||(37302623-37302657)
chr3 (1-51)||(41670556-41670606)
chr3 (32-66)||(44856030-44856064)
chr3 (5-61)||(14207222-14207278)
chr3 (5-61)||(14214970-14215026)
chr3 (5-66)||(27541462-27541523)
chr3 (7-60)||(38859496-38859549)
chr3 (50-143)||(39099413-39099506)
chr3 (30-63)||(54260166-54260199)
chr3 (5-69)||(7668144-7668208)
[»] chr5 (21 HSPs)
chr5 (5-139)||(11954482-11954616)
chr5 (17-138)||(16971987-16972108)
chr5 (12-142)||(42446174-42446304)
chr5 (5-137)||(21210869-21211001)
chr5 (11-141)||(17097687-17097816)
chr5 (5-129)||(35075474-35075596)
chr5 (11-139)||(32872784-32872912)
chr5 (25-88)||(19981923-19981986)
chr5 (11-135)||(13089672-13089796)
chr5 (32-138)||(31748414-31748520)
chr5 (5-94)||(611915-612004)
chr5 (1-66)||(5168229-5168294)
chr5 (5-62)||(40364619-40364676)
chr5 (32-94)||(12739850-12739912)
chr5 (32-94)||(12802673-12802735)
chr5 (5-63)||(29463046-29463104)
chr5 (19-73)||(32478448-32478502)
chr5 (17-58)||(39195780-39195821)
chr5 (34-137)||(39195824-39195927)
chr5 (5-63)||(22098306-22098364)
chr5 (32-134)||(36562944-36563046)
[»] chr8 (28 HSPs)
chr8 (5-138)||(42652646-42652777)
chr8 (15-137)||(36874001-36874121)
chr8 (5-139)||(33451451-33451583)
chr8 (5-138)||(44090937-44091070)
chr8 (5-138)||(34435624-34435757)
chr8 (5-139)||(1068657-1068791)
chr8 (11-143)||(33107749-33107881)
chr8 (1-140)||(25987672-25987811)
chr8 (17-140)||(15716861-15716984)
chr8 (11-140)||(26026953-26027082)
chr8 (16-140)||(12241134-12241258)
chr8 (6-138)||(37172112-37172244)
chr8 (34-141)||(28772010-28772117)
chr8 (5-139)||(44061768-44061902)
chr8 (32-137)||(2730849-2730954)
chr8 (5-94)||(45405915-45406004)
chr8 (19-138)||(9630188-9630307)
chr8 (5-94)||(5600918-5601007)
chr8 (5-94)||(5639613-5639702)
chr8 (5-69)||(43397831-43397895)
chr8 (1-59)||(44825489-44825547)
chr8 (5-66)||(32501156-32501217)
chr8 (19-135)||(9629628-9629744)
chr8 (11-66)||(34186663-34186718)
chr8 (5-63)||(25830208-25830266)
chr8 (1-66)||(10692485-10692550)
chr8 (13-129)||(4672050-4672166)
chr8 (34-134)||(32809179-32809279)
[»] chr4 (42 HSPs)
chr4 (5-138)||(55266076-55266209)
chr4 (17-142)||(50050700-50050824)
chr4 (5-146)||(51255797-51255938)
chr4 (5-146)||(39158156-39158297)
chr4 (5-139)||(5386423-5386557)
chr4 (61-137)||(21014104-21014180)
chr4 (12-136)||(41262234-41262358)
chr4 (5-140)||(38519844-38519979)
chr4 (5-142)||(29227126-29227263)
chr4 (5-138)||(26600086-26600219)
chr4 (32-140)||(18316015-18316123)
chr4 (11-136)||(52204907-52205032)
chr4 (32-140)||(14443276-14443384)
chr4 (32-142)||(51577692-51577802)
chr4 (5-134)||(54000749-54000878)
chr4 (12-139)||(2004075-2004202)
chr4 (38-140)||(19651804-19651906)
chr4 (1-86)||(36130292-36130377)
chr4 (35-138)||(50506470-50506572)
chr4 (1-147)||(13196819-13196965)
chr4 (1-66)||(26732271-26732336)
chr4 (36-69)||(38376447-38376480)
chr4 (1-66)||(46634146-46634211)
chr4 (40-139)||(22813608-22813707)
chr4 (1-63)||(1795944-1796006)
chr4 (5-63)||(19232096-19232154)
chr4 (32-66)||(26910279-26910313)
chr4 (5-59)||(31574906-31574960)
chr4 (5-63)||(49585045-49585103)
chr4 (11-69)||(50608581-50608639)
chr4 (29-63)||(55609127-55609161)
chr4 (11-56)||(193589-193634)
chr4 (34-139)||(10146975-10147080)
chr4 (5-66)||(10250475-10250536)
chr4 (12-61)||(12138910-12138959)
chr4 (1-70)||(24509343-24509412)
chr4 (32-61)||(36123424-36123453)
chr4 (1-73)||(48494867-48494937)
chr4 (30-59)||(49365215-49365244)
chr4 (30-63)||(51225487-51225520)
chr4 (11-63)||(7632424-7632476)
chr4 (5-69)||(40348844-40348908)
[»] chr7 (30 HSPs)
chr7 (5-138)||(46880953-46881086)
chr7 (5-139)||(12007072-12007206)
chr7 (5-138)||(32777594-32777727)
chr7 (5-138)||(43807700-43807833)
chr7 (19-140)||(15325525-15325646)
chr7 (5-138)||(29723812-29723947)
chr7 (5-138)||(37352161-37352294)
chr7 (5-140)||(34978347-34978482)
chr7 (5-140)||(43081775-43081910)
chr7 (11-140)||(33845099-33845228)
chr7 (34-138)||(2008719-2008823)
chr7 (5-138)||(13152643-13152777)
chr7 (5-139)||(27570394-27570528)
chr7 (5-135)||(28249460-28249590)
chr7 (5-140)||(26749055-26749190)
chr7 (32-139)||(45419947-45420054)
chr7 (26-124)||(3148798-3148896)
chr7 (32-136)||(33057457-33057561)
chr7 (11-135)||(21103069-21103193)
chr7 (1-70)||(17945114-17945183)
chr7 (1-70)||(33776406-33776475)
chr7 (5-73)||(47448877-47448945)
chr7 (29-63)||(31398199-31398233)
chr7 (5-63)||(40854617-40854675)
chr7 (5-75)||(47684212-47684282)
chr7 (30-63)||(33224899-33224932)
chr7 (5-66)||(38956578-38956639)
chr7 (5-66)||(44189270-44189331)
chr7 (1-69)||(43025386-43025454)
chr7 (11-63)||(48145581-48145633)
[»] scaffold0618 (1 HSPs)
scaffold0618 (5-138)||(8840-8973)
[»] scaffold0201 (1 HSPs)
scaffold0201 (5-138)||(8523-8656)
[»] scaffold0034 (1 HSPs)
scaffold0034 (5-136)||(101790-101926)
[»] scaffold0128 (1 HSPs)
scaffold0128 (34-139)||(11014-11119)
[»] scaffold0110 (1 HSPs)
scaffold0110 (5-73)||(28279-28347)
[»] scaffold0276 (1 HSPs)
scaffold0276 (32-138)||(1722-1828)
[»] scaffold0184 (1 HSPs)
scaffold0184 (26-138)||(13444-13556)
[»] scaffold0078 (1 HSPs)
scaffold0078 (26-138)||(59288-59400)
[»] scaffold0013 (1 HSPs)
scaffold0013 (32-61)||(94846-94875)


Alignment Details
Target: scaffold0432 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 6544 - 6405
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagt 100  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||     
T  6544 tttatctctcatactcacattgttcttctactttctctctctattactttgatttttgtgtcactatctaaatccctttgtatagtttggttgtataaga 6445  T
Q  101 agttgtcacaataaagggttgttcaaataacattgctctt 140  Q
    |||||| |||||||| ||||||||||||| ||||||||||    
T  6444 agttgtaacaataaaaggttgttcaaatagcattgctctt 6405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 30831805 - 30831940
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  30831805 tctctcatactcacattgttcttctactttctctctctattactttgatttttgtgccactatctaaatccctttgtataatttgattgtataagaagtt 30831904  T
Q  105 gtcacaataaagggttgttcaaataacattgctctt 140  Q
    ||||||||||| | ||||||||||||||||| ||||    
T  30831905 gtcacaataaatgattgttcaaataacattgatctt 30831940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 26481104 - 26480976
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcaca 110  Q
    |||||||| ||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  26481104 atactcacgttgtttttctactttctttctctattactttgatttttgtgtcactatctaaatccctttgtataatttggttgtataagaagttgtcaca 26481005  T
Q  111 ataaagggttgttcaaataacattgctct 139  Q
    |||||||||||||||||||||||||||||    
T  26481004 ataaagggttgttcaaataacattgctct 26480976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 37003661 - 37003766
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||||||||||||  |||||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||    
T  37003661 tctctcatactcacattgttcttctacattctctctttattactttgatttttatgccactatctaaacccctttgtataatttggttgtataagaagtt 37003760  T
Q  105 gtcaca 110  Q
    ||||||    
T  37003761 gtcaca 37003766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 11965844 - 11965979
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||   | |||||||| |||||||  ||  ||||    
T  11965844 tctctcatacacacattgttcttctactttctctctctattgctttgatttttgtgccactatctaaatttctatgtataatgtggttgtccaacaagtt 11965943  T
Q  105 gtcacaataaagggttgttcaaataacattgctctt 140  Q
    ||||||  ||| ||||||||||||||||||||||||    
T  11965944 gtcacataaaaaggttgttcaaataacattgctctt 11965979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 37316835 - 37316697
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| ||||||||||||||| |||||||||||||| ||||||| |||||| ||||| ||||||   |||||||||| |||||||  ||  ||||    
T  37316835 tctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgtcactacctaaatttctttgtataatgtggttgtccaacaagtt 37316736  T
Q  105 gtcacaataaagggttgttcaaataacattgctcttaat 143  Q
    |||| |  ||| |||||||||||||||||||||||||||    
T  37316735 gtcatagaaaaaggttgttcaaataacattgctcttaat 37316697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 37731220 - 37731087
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| ||||||||||||||| |||| ||||||||| ||||||| |||||||||||| ||||||   |||||||||| |||||||  ||  ||||    
T  37731220 tctctcatacacacattgttcttctactttcgctctctattgctttgatatttgtgccactacctaaatttctttgtataatgtggttgtgcaacaagtt 37731121  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
    ||||||  ||| ||||||||||||||||||||||    
T  37731120 gtcacataaaaaggttgttcaaataacattgctc 37731087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 18510733 - 18510864
Alignment:
Q  12 tactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaa 111  Q
    |||||||||||| |||||| |||||||||||| | |||||||||||||| || || ||||||   ||||||| |||||||||| |||   ||||||||||    
T  18510733 tactcacattgtccttctactttctctctctacttctttgatttttgtgtcattacctaaatttctttgtattatttggttgtctaataggttgtcacaa 18510832  T
Q  112 taaagggttgttcaaataacattgctcttaat 143  Q
     |||  ||||||||||||||||||| ||||||    
T  18510833 gaaaatgttgttcaaataacattgcccttaat 18510864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 36587462 - 36587356
Alignment:
Q  34 tctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacat 133  Q
    |||||||||||| |||||||||||||||||||||||||||   |||||||||||| |||||  ||   ||||||| || ||| |||||||||||||||||    
T  36587462 tctctctctattgctttgatttttgtgccactatctaaatttctttgtataatttagttgtccaaaaggttgtcagaagaaatggttgttcaaataacat 36587363  T
Q  134 tgctctt 140  Q
    |||||||    
T  36587362 tgctctt 36587356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 44239097 - 44239220
Alignment:
Q  15 tcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataa 114  Q
    ||||||| || || |||||| |||||||||| |||||||||||||| ||||  ||||||   |||||||||||| |||||  ||  | ||||||||||||    
T  44239097 tcacattattattttattttatctctctattgctttgatttttgtgtcactgcctaaatttctttgtataatttagttgtccaaaaaattgtcacaataa 44239196  T
Q  115 agggttgttcaaataacattgctc 138  Q
    | ||||||||||||||||||||||    
T  44239197 atggttgttcaaataacattgctc 44239220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 14871951 - 14872057
Alignment:
Q  34 tctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacat 133  Q
    ||||||||||||  ||||||||||||||||||| ||||||   ||||||||||||| |||| |||  |||||| |||| ||| |||||||||||||||||    
T  14871951 tctctctctattgttttgatttttgtgccactacctaaatttctttgtataatttgattgtctaacaagttgttacaagaaatggttgttcaaataacat 14872050  T
Q  134 tgctctt 140  Q
    | |||||    
T  14872051 ttctctt 14872057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 31578485 - 31578619
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||| ||||| || ||| |||||||||| |||||||||||||| ||||| ||||||   ||||||||| || |||||  ||  ||||    
T  31578485 tctctcatactcacattattcttttactttatctctctattgctttgatttttgtgtcactacctaaatttctttgtataagttagttgtccaacaagtt 31578584  T
Q  105 gtcacaataaagggttgttcaaataacattgctct 139  Q
    ||||||| ||| | ||||||||||| |||||||||    
T  31578585 gtcacaagaaatgattgttcaaatatcattgctct 31578619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 14877083 - 14877175
Alignment:
Q  48 tttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacattgctctt 140  Q
    ||||||||||||||||||| ||||||   |||||  ||||||||||| |||  ||||||||||| ||| |||||||||||||||||| |||||    
T  14877083 tttgatttttgtgccactacctaaatttctttgttaaatttggttgtctaacaagttgtcacaagaaatggttgttcaaataacatttctctt 14877175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 8847544 - 8847669
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcaca 110  Q
    |||| |||||| |||||||| |||||||||||||| ||||||| ||| | |||||||||||||   ||||||||||  ||||||  ||  ||||||||||    
T  8847544 atacacacattattcttctactttctctctctattgctttgatatttataccactatctaaatttctttgtataatgcggttgtccaacaagttgtcaca 8847643  T
Q  111 -ataaagggttgttcaaataacattg 135  Q
     | ||| | |||||||||||||||||    
T  8847644 tagaaaagattgttcaaataacattg 8847669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 19916706 - 19916787
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataat 86  Q
    ||||| |||| ||||||||||||||| ||||||||||||||| |||||| |||||| ||||  ||||||   ||||||||||    
T  19916706 tctctcatacacacattgttcttctactttctctctctattattttgatatttgtgtcactgcctaaatttctttgtataat 19916787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 39234190 - 39234076
Alignment:
Q  15 tcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataa 114  Q
    ||||||||| |||||| ||| |||||| | |  ||||||||||||||||| | ||||||   ||||||| |||||||||| |||   |||||||||| ||    
T  39234190 tcacattgtccttctactttttctctccaatgttttgatttttgtgccaccacctaaatttctttgtattatttggttgtctaataggttgtcacaagaa 39234091  T
Q  115 agggttgttcaaata 129  Q
    |  ||||||||||||    
T  39234090 aatgttgttcaaata 39234076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 9207640 - 9207701
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||| ||||||||||| || || || |||||||||||||| ||||| ||||||||||||||    
T  9207640 tctctcatactcacattatttttttactttctctctctattgctttggtttttgtgccacta 9207701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 19109090 - 19109053
Alignment:
Q  29 tattttctctctctattactttgatttttgtgccacta 66  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  19109090 tattttctctctctattgctttgatttttgtgccacta 19109053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 1040570 - 1040622
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgcca 63  Q
    ||||||||||| |  || |||||||||| ||||||||||||||||||||||||    
T  1040570 atactcacattatatttttattttctctttctattactttgatttttgtgcca 1040622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 1079106 - 1079010
Alignment:
Q  42 tattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacattgctc 138  Q
    |||| |||||||||||||| ||||   |||||   |||||||||||| ||||| |||   |||||||||| ||| ||||||||| ||||||||||||    
T  1079106 tattgctttgatttttgtgtcactgcttaaatttctttgtataatttagttgtctaaaaggttgtcacaagaaatggttgttcatataacattgctc 1079010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 18254230 - 18254166
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatct 69  Q
    ||||| ||||||||||| |  || || |||||||||||||| ||||| |||||||||||||||||    
T  18254230 tctctcatactcacattatctttttactttctctctctattgctttggtttttgtgccactatct 18254166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 29449262 - 29449318
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgc 61  Q
    ||||| ||||||||||| |  || || ||||||||||||||||||||||||||||||    
T  29449262 tctctcatactcacattatatttttactttctctctctattactttgatttttgtgc 29449318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 34945084 - 34945050
Alignment:
Q  32 tttctctctctattactttgatttttgtgccacta 66  Q
    |||||||||||||| ||||||||||||||||||||    
T  34945084 tttctctctctattgctttgatttttgtgccacta 34945050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 2427947 - 2427886
Alignment:
Q  77 tttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacattgctc 138  Q
    |||||||||||| |||||  ||  | ||||||||| ||| ||||||||||||||||||||||    
T  2427947 tttgtataatttagttgtccaacaaattgtcacaaaaaatggttgttcaaataacattgctc 2427886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 7698231 - 7698304
Alignment:
Q  15 tcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataattt 88  Q
    ||||||| || || || ||||||| |||||| |||||||||||||||||||| |||| | | |||||| |||||    
T  7698231 tcacattatttttttactttctctttctattgctttgatttttgtgccactacctaatttcctttgtaaaattt 7698304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13711391 - 13711322
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatcta 70  Q
    ||||||||| ||| ||||||| || || || |||||||||||||||||||| |||  ||| |||||||||    
T  13711391 tttatctctcatattcacattatttttttactttctctctctattactttggtttccgtgtcactatcta 13711322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 43057115 - 43057204
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgt 94  Q
    ||||| ||||||||||| |  || |||||| | |||||||| |||||||||||||| |||||  |||||  |||| |||||||| |||||    
T  43057115 tctcttatactcacattatcattttattttttttctctattgctttgatttttgtgtcactacttaaatttatttatataatttagttgt 43057204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 32944524 - 32944456
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaat 73  Q
    ||||| ||| ||||||| | ||| || ||| |||||||||| |||||||||||||| ||||| ||||||    
T  32944524 tctctcatagtcacattctccttttactttttctctctattgctttgatttttgtgtcactacctaaat 32944456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 36802947 - 36803002
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgc 61  Q
    ||||| ||||||||||| || || || ||| ||||||||||||||||||||||||||    
T  36802947 tctctcatactcacattattttt-tactttatctctctattactttgatttttgtgc 36803002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 4213123 - 4213258
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||  ||| ||||||||||||||||||| ||||    
T  4213123 tctctcatactcacattgttcttctaccttctctctctattactttgatttttgtgtcactatctaaatctttttatataatttggttgtataagaagtt 4213222  T
Q  105 gtcacaataaagggttgttcaaataacattgctctt 140  Q
    ||||||||||||||||||||||||||||||||||||    
T  4213223 gtcacaataaagggttgttcaaataacattgctctt 4213258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 7919082 - 7918953
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||| |||  ||||    
T  7919082 tctctcatactcatattgtccttctactttatctctctattactttgatttttgtgccactacctaaatttctttgtataatttggttgtctaacaagtt 7918983  T
Q  105 gtcacaataaagggttgttcaaataacatt 134  Q
    ||||||| ||||||||||||||||||||||    
T  7918982 gtcacaagaaagggttgttcaaataacatt 7918953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 40439860 - 40439725
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| ||||||||||||||| |||||||||||||| ||||||| |||||| ||||| ||||||   |||||||||| |||||||  ||  | ||    
T  40439860 tctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgacactacctaaatttctttgtataatgtggttgtccaacaaatt 40439761  T
Q  105 gtcacaataaagggttgttcaaataacattgctctt 140  Q
    ||||||  ||| ||||||||||||||||||||||||    
T  40439760 gtcacataaaaaggttgttcaaataacattgctctt 40439725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 48983688 - 48983553
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||  || ||||| ||||||| |||||| ||||||||||||||||| |||||||||   |||||| |||||||||||  ||  ||||    
T  48983688 tctctcatactcacatgattattctactttctctttctattgctttgatttttgtgccattatctaaatttctttgtaaaatttggttgtccaacaagtt 48983589  T
Q  105 gtcacaataaagggttgttcaaataacattgctctt 140  Q
    ||||||||||| |||||| | |||||||||||||||    
T  48983588 gtcacaataaatggttgtaccaataacattgctctt 48983553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 17082763 - 17082674
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgt 94  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||   |||||||||| |||||||    
T  17082763 tctctcatacacacattattcttctattttctctctctattactttgatatttgtgccactacctaaatttctttgtataatatggttgt 17082674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 47642600 - 47642491
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataac 131  Q
    ||||||| |||||| |||| ||||||||| ||||||||||||   ||||||||||||||||||  ||  ||||||| ||| ||| |||||||||||||||    
T  47642600 tttctctttctattgctttaatttttgtgtcactatctaaatttctttgtataatttggttgtccaacaagttgtcccaaaaaatggttgttcaaataac 47642501  T
Q  132 attgctctta 141  Q
    ||||||||||    
T  47642500 attgctctta 47642491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 48858874 - 48859007
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||| |  || || || ||||||||||| |||||||||||||| ||||||||||||   |||||||||||| |||||  ||   |||    
T  48858874 tctctcatactcacattatcattttacttcctctctctattgctttgatttttgtgtcactatctaaatttctttgtataatttagttgtccaaaaggtt 48858973  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
    ||||||| ||| ||||||||| ||||||||||||    
T  48858974 gtcacaagaaatggttgttcatataacattgctc 48859007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 5771735 - 5771631
Alignment:
Q  34 tctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacat 133  Q
    ||||| |||||| ||||||||||| |||||||| ||||||   |||||||||||| ||||| |||   |||||||||| ||| | |||||||||||||||    
T  5771735 tctctatctattgctttgatttttctgccactacctaaatttctttgtataatttagttgtctaaaaggttgtcacaagaaatgattgttcaaataacat 5771636  T
Q  134 tgctc 138  Q
    |||||    
T  5771635 tgctc 5771631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 4857972 - 4858087
Alignment:
Q  16 cacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaa 115  Q
    ||||||||||||||| |||||||||||||| ||||||| ||||||||||||  |||||   |||||||||| |||||||  ||  | || |||||  |||    
T  4857972 cacattgttcttctactttctctctctattgctttgatatttgtgccactacttaaatttctttgtataatgtggttgtccaataaattatcacataaaa 4858071  T
Q  116 gggttgttcaaataac 131  Q
     |||||||||||||||    
T  4858072 aggttgttcaaataac 4858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 38878910 - 38878788
Alignment:
Q  16 cacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaa 115  Q
    ||||||||||||||| ||| ||| |||||| |||||||||||||| ||||| ||||||   ||| |||||| | |||||  ||  ||||||||||  |||    
T  38878910 cacattgttcttctactttttctttctattgctttgatttttgtgtcactacctaaatttctttatataatatagttgtccaacaagttgtcacataaaa 38878811  T
Q  116 gggttgttcaaataacattgctc 138  Q
      |||||||||||||||||||||    
T  38878810 atgttgttcaaataacattgctc 38878788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 33076176 - 33076228
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgcca 63  Q
    ||||||||||| |  || ||||||||||||||||||||||||| |||||||||    
T  33076176 atactcacattatatttttattttctctctctattactttgatatttgtgcca 33076228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 35369756 - 35369811
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    |||||||||||||  || || |||||||||||||| |||||||||||||| |||||    
T  35369756 atactcacattgtctttttactttctctctctattgctttgatttttgtgtcacta 35369811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 42468643 - 42468786
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||| ||||| || || || ||| ||||| ||||  ||| ||||||||| ||||| ||||||   ||||||||| || |||||  ||  | ||    
T  42468643 tctctcatacttacattattattttactttatctctttattgttttaatttttgtgtcactacctaaatttctttgtataagttagttgtccaacaaatt 42468742  T
Q  105 gtcacaataaagggttgttcaaataacattgctcttaatatata 148  Q
    ||||||| ||| ||||||||||||| ||||||||| ||| ||||    
T  42468743 gtcacaagaaatggttgttcaaatatcattgctctcaatttata 42468786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 4776837 - 4776867
Alignment:
Q  36 tctctctattactttgatttttgtgccacta 66  Q
    |||||||||||||||||||||||||||||||    
T  4776837 tctctctattactttgatttttgtgccacta 4776867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 49660226 - 49660276
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttg 51  Q
    ||||||||| ||||||||||| || || || ||||||||||||||||||||    
T  49660226 tttatctctcatactcacattatttttttactttctctctctattactttg 49660276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 23645457 - 23645522
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||||||| ||||||||||| |  || || ||||||||||||||  |||| ||||||||||||||    
T  23645457 tttatctctcatactcacattatctttttactttctctctctattgttttggtttttgtgccacta 23645522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 31088231 - 31088292
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||| ||||||||||| |  || || |||||||||||||| ||||| ||||||||||||||    
T  31088231 tctctcatactcacattatctttttactttctctctctattgctttggtttttgtgccacta 31088292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 43560251 - 43560320
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatcta 70  Q
    ||||||||| |||||||||||  | || || |||||||||||||||||||| |||  ||| |||||||||    
T  43560251 tttatctctcatactcacattaattttttactttctctctctattactttgttttccgtgtcactatcta 43560320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 9988008 - 9988060
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgcca 63  Q
    ||||||||||| |  || || |||||||||||||| |||||||||||||||||    
T  9988008 atactcacattatatttttactttctctctctattgctttgatttttgtgcca 9988060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 11635555 - 11635420
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | ||    
T  11635555 tctctcatattcacattgctcttctattttctctctctattactttgatttttgtgccactatctaaatctctttgtataatttggttgtataagaaatt 11635456  T
Q  105 gtcacaataaagggttgttcaaataacattgctctt 140  Q
    |||||||||||||||||||||||||| | |||||||    
T  11635455 gtcacaataaagggttgttcaaataagactgctctt 11635420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 17182180 - 17182282
Alignment:
Q  36 tctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacattg 135  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||    
T  17182180 tctctctattactttgatttttatgccactatctaaatccctttgtataatttgattgtataagaagttgtcataataaagggttgttcaaataacattg 17182279  T
Q  136 ctc 138  Q
    |||    
T  17182280 ctc 17182282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 1286993 - 1287099
Alignment:
Q  34 tctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacat 133  Q
    |||||||| |||||||||||||||||| |||||||||||| | |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  1286993 tctctctcgattactttgatttttgtgtcactatctaaattcttttgtataatttagttgtataagaagttgtcacaataaaggattgttcaaataacat 1287092  T
Q  134 tgctctt 140  Q
    |||||||    
T  1287093 tgctctt 1287099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 18065110 - 18064975
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| ||||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||||   |||||||||| |||||||  ||  ||||    
T  18065110 tctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgccactacctaaatttctttgtataatgtggttgtccaacaagtt 18065011  T
Q  105 gtcacaataaagggttgttcaaataacattgctctt 140  Q
    ||||||  |||  |||||||||||||||||| ||||    
T  18065010 gtcacataaaaaagttgttcaaataacattgatctt 18064975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 33712371 - 33712513
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| ||||||||||||||| ||||||||||| || ||||||| ||||||| |||| ||||||   |||||||||| |||||||  ||  ||||    
T  33712371 tctctcatacacacattgttcttctactttctctctctgttgctttgatatttgtgcaactacctaaatttctttgtataatgtggttgtccaacaagtt 33712470  T
Q  105 gtcacaataaagggttgttcaaataacattgctcttaatatat 147  Q
    || |||  ||| |||||||||||||||||||||||| ||||||    
T  33712471 gttacataaaaaggttgttcaaataacattgctcttgatatat 33712513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 8645359 - 8645492
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||| | ||| || |||||||||||||| ||||||||| || | ||||| ||||||   |||||||||||| |||||  ||   |||    
T  8645359 tctctcatactcacattatccttttactttctctctctattgctttgatttatgcgtcactacctaaatttctttgtataatttagttgtccaaaaggtt 8645458  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
    ||||||| ||| ||||||||||||| ||||||||    
T  8645459 gtcacaagaaatggttgttcaaatatcattgctc 8645492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 5739778 - 5739649
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcaca 110  Q
    ||||||| ||||| |||||| ||||||| |||||| |||||||||||||| ||||| |||| |   ||| | ||||||| ||||  ||  |||||||| |    
T  5739778 atactcatattgtccttctaatttctctttctattgctttgatttttgtgtcactacctaattttctttatttaatttgattgtccaacaagttgtcata 5739679  T
Q  111 ataaagggttgttcaaataacattgctctt 140  Q
    | ||| || |||||||||||||||||||||    
T  5739678 agaaatggatgttcaaataacattgctctt 5739649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 1156776 - 1156834
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatct 69  Q
    ||||||||||| || || || |||||||||||||||||||| |||||||||||||||||    
T  1156776 atactcacattatttttttactttctctctctattactttggtttttgtgccactatct 1156834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 10335597 - 10335666
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatcta 70  Q
    ||||||||| ||||||||||| || || || |||||||||||||||||||| |||  ||| |||||||||    
T  10335597 tttatctctcatactcacattatttttttactttctctctctattactttggtttccgtgtcactatcta 10335666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 14910251 - 14910316
Alignment:
Q  29 tattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgt 94  Q
    |||||| |||||||||| |||||||||||||| ||||| ||||||   |||||||||||| |||||    
T  14910251 tattttatctctctattgctttgatttttgtgtcactacctaaatttctttgtataatttagttgt 14910316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 31869142 - 31869176
Alignment:
Q  29 tattttctctctctattactttgatttttgtgcca 63  Q
    |||||||||||||||||||||||||||| ||||||    
T  31869142 tattttctctctctattactttgattttcgtgcca 31869176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 12588367 - 12588335
Alignment:
Q  34 tctctctctattactttgatttttgtgccacta 66  Q
    |||||||||||| ||||||||||||||||||||    
T  12588367 tctctctctattgctttgatttttgtgccacta 12588335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 25811859 - 25811799
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccact 65  Q
    ||||| ||||||||||| |  || || |||||||||||||| ||||| |||||||||||||    
T  25811859 tctctcatactcacattatctttttactttctctctctattgctttggtttttgtgccact 25811799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 27168702 - 27168572
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||| ||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  27168702 tctctcatactcatattattcttctacttcctctctctattactttgatttttgtgccactatttaaatccctttgtataatttggttgtataagaagtt 27168603  T
Q  105 gtcacaataaagggttgttcaaataacattg 135  Q
    |||| ||||||||||||||||||||||||||    
T  27168602 gtcataataaagggttgttcaaataacattg 27168572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 33472439 - 33472303
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||| ||| ||||||||| || ||||| | ||||||||||||||||||||  |||||||||||||  ||||||||||||| ||||||||| ||||    
T  33472439 tctctcatattcatattgttcttttactttctttttctattactttgatttttgtatcactatctaaatctctttgtataatttgattgtataagaagtt 33472340  T
Q  105 gtcacaataaagggttgttcaaataacattgctctta 141  Q
    |||| |||||||||||||| |||||||||| ||||||    
T  33472339 gtcataataaagggttgtttaaataacattactctta 33472303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 34307555 - 34307428
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcaca 110  Q
    |||||||||||||||||||| ||||||| |||||| ||||| |||||||  ||||| ||||||   ||||||||||||||||||  ||  ||||||||||    
T  34307555 atactcacattgttcttctactttctctttctattgctttggtttttgtatcactacctaaatttctttgtataatttggttgtccaataagttgtcaca 34307456  T
Q  111 ataaagggttgttcaaataacattgctc 138  Q
    | ||||| ||||||||||||||||||||    
T  34307455 agaaaggattgttcaaataacattgctc 34307428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 9862596 - 9862709
Alignment:
Q  17 acattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccat-ttgtataatttggttgtataagtagttgtcacaataaa 115  Q
    ||||||| ||| |||||| |||||| |||||||||||||||||||||||||||||| | || |||||||||||||||| |||||  ||||||||||||||    
T  9862596 acattgtccttttattttttctctcaattactttgatttttgtgccactatctaaa-ctatgttgtataatttggttgcataagaggttgtcacaataaa 9862694  T
Q  116 gggttgttcaaataa 130  Q
     ||||||||||||||    
T  9862695 aggttgttcaaataa 9862709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 29525942 - 29526048
Alignment:
Q  33 ttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataaca 132  Q
    |||||||||||||  ||||||||||||||||||||||||||   |||||| |||||||||||  ||  ||||||||||||||| |||||| |||||||||    
T  29525942 ttctctctctattgttttgatttttgtgccactatctaaatttttttgtaaaatttggttgtccaacaagttgtcacaataaatggttgtacaaataaca 29526041  T
Q  133 ttgctct 139  Q
    |||||||    
T  29526042 ttgctct 29526048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 38671675 - 38671797
Alignment:
Q  12 tactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaa 111  Q
    |||||||||||||||| || ||| | ||||||||||||| ||||||||  |||||||||||||  ||| ||||||||  ||||||| | |||| | ||||    
T  38671675 tactcacattgttcttatactttatttctctattactttaatttttgtatcactatctaaatcactttatataatttaattgtataggaagttattacaa 38671774  T
Q  112 taaagggttgttcaaataacatt 134  Q
    |||| ||||||||||||||||||    
T  38671775 taaatggttgttcaaataacatt 38671797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 39714047 - 39713922
Alignment:
Q  15 tcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataa 114  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||  ||||||||||    ||||||||||||||||||  ||  | || |||||| ||    
T  39714047 tcacattgttcttatactttctctctctattgctttgatttttgtgttactatctaaaattttttgtataatttggttgtccaacaaattatcacaaaaa 39713948  T
Q  115 agggttgttcaaataacattgctctt 140  Q
    | ||||||||||||||||||| ||||    
T  39713947 atggttgttcaaataacattgttctt 39713922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 4494230 - 4494122
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataac 131  Q
    ||||||| |||||| |||||||||||||| ||||| ||||||   ||||||||||||||||||  ||  |||||||| || ||| |||||||||||||||    
T  4494230 tttctctttctattgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaataac 4494131  T
Q  132 attgctctt 140  Q
    |||||||||    
T  4494130 attgctctt 4494122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 32362980 - 32363117
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagt 100  Q
    ||||||||| |||| |||||||||||| || ||  |||||||||| ||||||| ||| |||||||| |||||||  |||||||||| |||||||  ||      
T  32362980 tttatctctcatacacacattgttcttttactt--tctctctattgctttgatatttatgccactacctaaatctctttgtataatgtggttgtccaata 32363077  T
Q  101 agttgtcacaataaagggttgttcaaataacattgctctt 140  Q
    | ||||||||  ||| |||||||||||||||||| |||||    
T  32363078 aattgtcacatgaaaaggttgttcaaataacatttctctt 32363117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 31104727 - 31104850
Alignment:
Q  17 acattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaag 116  Q
    ||||||| |||||| ||||||||||||||  ||||||||||||| ||||| ||||||   || ||||||||| |||||  ||  | ||||||||| |||     
T  31104727 acattgtccttctactttctctctctattgttttgatttttgtgtcactacctaaatttcttcgtataatttagttgtcaaacaaattgtcacaagaaaa 31104826  T
Q  117 ggttgttcaaataacattgctctt 140  Q
     |||||||||||||||||||||||    
T  31104827 agttgttcaaataacattgctctt 31104850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 41443211 - 41443076
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||| ||||| || ||||||||||||||  |||||||||||||| | || ||||||   |||||||||||| |||||  ||   |||    
T  41443211 tctctcatactcacattattcttttactttctctctctattgttttgatttttgtgcaaatacctaaatttctttgtataatttagttgtccaaaaggtt 41443112  T
Q  105 gtcacaataaagggttgttcaaataacattgctctt 140  Q
    ||||||| ||| | ||||||||||| ||||||||||    
T  41443111 gtcacaagaaatgattgttcaaatatcattgctctt 41443076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 9692803 - 9692901
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataa 130  Q
    |||||||||||||| |||||||||||||| ||||  |||| |   |||||||||||| ||||| |||   |||||||||| ||| ||||||||||||||    
T  9692803 tttctctctctattgctttgatttttgtgtcactgcctaactttctttgtataatttagttgtctaaaaggttgtcacaagaaatggttgttcaaataa 9692901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 34064130 - 34064024
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagt 100  Q
    ||||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| |  ||||| |||| |  || ||||||||||| |||| |||      
T  34064130 tttatctctcatactcacattatttttctactttctttctctattactttgatttttatatcactacctaagtttatctgtataatttgtttgtctaaca 34064031  T
Q  101 agttgtc 107  Q
    |||||||    
T  34064030 agttgtc 34064024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 48152310 - 48152255
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttt 56  Q
    ||||||||| ||||||||||| || || ||||||||||||||||||||||| ||||    
T  48152310 tttatctctcatactcacattatttttttattttctctctctattactttggtttt 48152255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 34456868 - 34456974
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataac 131  Q
    |||||||||||||| |||| |||||||||||| || ||||||   |||||||||||| ||||| |||    ||||||||| |||   ||||||||||| |    
T  34456868 tttctctctctattgctttaatttttgtgccaatacctaaatttctttgtataatttagttgtctaaaagattgtcacaagaaataattgttcaaatatc 34456967  T
Q  132 attgctc 138  Q
    |||||||    
T  34456968 attgctc 34456974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 5244279 - 5244340
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||| ||||||||||| || || || |||||||||||||| ||||| ||||||||||||||    
T  5244279 tctctcatactcacattatttttttactttctctctctattgctttggtttttgtgccacta 5244340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 288776 - 288840
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatct 69  Q
    ||||| ||||||||||| || || || |||||||||||||| ||||| |||||||| ||||||||    
T  288776 tctctcatactcacattatttttttactttctctctctattgctttggtttttgtgtcactatct 288840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 25188416 - 25188313
Alignment:
Q  34 tctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcac-aataaagggttgttcaaataaca 132  Q
    |||||||||||| |||||||||| ||| || || ||||||   ||||||| |||| ||||| |||   |||||||| || ||| ||||||||||||||||    
T  25188416 tctctctctattgctttgattttggtgtcattacctaaatttctttgtattatttagttgtctaataggttgtcacaaaaaaaaggttgttcaaataaca 25188317  T
Q  133 ttgc 136  Q
    ||||    
T  25188316 ttgc 25188313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 50314675 - 50314730
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtg 60  Q
    ||||| ||||||||||| |  || || |||||||||||||||||||||||||||||    
T  50314675 tctctcatactcacattatgtttttactttctctctctattactttgatttttgtg 50314730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 16479707 - 16479741
Alignment:
Q  29 tattttctctctctattactttgatttttgtgcca 63  Q
    |||||||||||||||||||||||||||| ||||||    
T  16479707 tattttctctctctattactttgattttcgtgcca 16479741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 20547984 - 20547950
Alignment:
Q  32 tttctctctctattactttgatttttgtgccacta 66  Q
    |||||||||||||| ||||||||||||||||||||    
T  20547984 tttctctctctattgctttgatttttgtgccacta 20547950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28700507 - 28700569
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgcca 63  Q
    ||||||||| ||||||||||| |  || || |||||||||||||| ||||| |||||||||||    
T  28700507 tttatctctcatactcacattatgtttttactttctctctctattgctttggtttttgtgcca 28700569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 36756047 - 36756013
Alignment:
Q  29 tattttctctctctattactttgatttttgtgcca 63  Q
    ||||||||||||||||| |||||||||||||||||    
T  36756047 tattttctctctctattgctttgatttttgtgcca 36756013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 37302623 - 37302657
Alignment:
Q  32 tttctctctctattactttgatttttgtgccacta 66  Q
    |||||||||||||||||||| ||||||||||||||    
T  37302623 tttctctctctattactttggtttttgtgccacta 37302657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41670606 - 41670556
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttg 51  Q
    ||||||||| |||||||||||  | || |||||||||||||||||||||||    
T  41670606 tttatctctcatactcacattaattttttattttctctctctattactttg 41670556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 44856030 - 44856064
Alignment:
Q  32 tttctctctctattactttgatttttgtgccacta 66  Q
    |||||||||||||| ||||||||||||||||||||    
T  44856030 tttctctctctatttctttgatttttgtgccacta 44856064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 14207278 - 14207222
Alignment:
Q  5 tctctgatactcacattgt-tcttctattttctctctctattactttgatttttgtgc 61  Q
    ||||| ||||||||||| | ||||| |||||||||||||||| |||||||||||||||    
T  14207278 tctctcatactcacattatgtcttc-attttctctctctattgctttgatttttgtgc 14207222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 14215026 - 14214970
Alignment:
Q  5 tctctgatactcacattgt-tcttctattttctctctctattactttgatttttgtgc 61  Q
    ||||| ||||||||||| | ||||| |||||||||||||||| |||||||||||||||    
T  14215026 tctctcatactcacattatgtcttc-attttctctctctattgctttgatttttgtgc 14214970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 27541523 - 27541462
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||| ||||||||||| |  || || |||||||||||||| ||||| ||||||||||||||    
T  27541523 tctctcatactcacattatctttttactttctctctctattgctttggtttttgtgccacta 27541462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 38859496 - 38859549
Alignment:
Q  7 tctgatactcacattgttcttctattttctctctctattactttgatttttgtg 60  Q
    ||||||||| |||||||  || |||||||||| ||||||| |||||||||||||    
T  38859496 tctgatacttacattgtatttttattttctctttctattattttgatttttgtg 38859549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 39099413 - 39099506
Alignment:
Q  50 tgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacattgctcttaat 143  Q
    |||||||||| |||||| ||||||   ||||||||||||  ||||  ||   |||||||||| |||   |||||||||||||||||||||||||    
T  39099413 tgatttttgtaccactacctaaatttctttgtataatttaattgtccaaaatgttgtcacaaaaaataattgttcaaataacattgctcttaat 39099506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 54260199 - 54260166
Alignment:
Q  30 attttctctctctattactttgatttttgtgcca 63  Q
    |||||||||||||||| |||||||||||||||||    
T  54260199 attttctctctctattgctttgatttttgtgcca 54260166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 7668208 - 7668144
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatct 69  Q
    ||||| ||||||||||| |  || || |||||||||||||| ||||| ||||| |||||||||||    
T  7668208 tctcttatactcacattatctttttactttctctctctattgctttggtttttatgccactatct 7668144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 11954482 - 11954616
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||||| ||||    
T  11954482 tctctcatactcacattgttattttattttctttctctattactttgatttttgtgccactatctaagtcactttgtataatttagttgtataagaagtt 11954581  T
Q  105 gtcacaataaagggttgttcaaataacattgctct 139  Q
    |||| |||||| |||||||||||||||||||||||    
T  11954582 gtcaaaataaatggttgttcaaataacattgctct 11954616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 16972108 - 16971987
Alignment:
Q  17 acattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaag 116  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || | ||||||||| ||||||||||||| ||||||||| |||||||||||||||     
T  16972108 acattgttcttctactttctctctctattactttgatttttgtgtcagtctctaaatccctttgtataatttgattgtataagaagttgtcacaataaat 16972009  T
Q  117 ggttgttcaaataacattgctc 138  Q
    | ||||||||||||||||||||    
T  16972008 gattgttcaaataacattgctc 16971987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 42446304 - 42446174
Alignment:
Q  12 tactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaa 111  Q
    |||||||||||| |||||| ||| |||||||||| ||||||||||||||||| || ||||||   ||||||| |||||||||| |||   ||||||||||    
T  42446304 tactcacattgtccttctactttttctctctattgctttgatttttgtgccattacctaaatttctttgtattatttggttgtctaataggttgtcacaa 42446205  T
Q  112 taaagggttgttcaaataacattgctcttaa 142  Q
     |||  ||||||||||||||||||| |||||    
T  42446204 gaaaatgttgttcaaataacattgcccttaa 42446174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 21210869 - 21211001
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| |||||| |||||||| |||||||||||||| |||| |||||||| | |||| ||||||   |||||||||| |||||||  ||  ||||    
T  21210869 tctctcatacacacattattcttctactttctctctctattgctttaatttttgtactactacctaaatttctttgtataatgtggttgttcaataagtt 21210968  T
Q  105 gtcacaataaagggttgttcaaataacattgct 137  Q
    ||||||  ||| |||||||||||||||||||||    
T  21210969 gtcacataaaaaggttgttcaaataacattgct 21211001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 17097816 - 17097687
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcaca 110  Q
    |||||||||||||  ||||| ||||||| ||||||||||||||||||||| ||||| |||| |   |||||||||||| |||||  ||  | ||||||||    
T  17097816 atactcacattgtcattctactttctctttctattactttgatttttgtgtcactacctaattttctttgtataatttagttgtccaacaaattgtcaca 17097717  T
Q  111 ataaagggttgttcaaataacattgctctta 141  Q
    | ||| || ||||||||||||||| ||||||    
T  17097716 agaaatgg-tgttcaaataacattactctta 17097687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 35075596 - 35075474
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||| |  || ||||||||  ||||||| ||||||||||||| ||| |||||||||   ||||||||   ||||||| |||| ||||    
T  35075596 tctctcatactcacattatatttttattttct--ctctattgctttgatttttgtaccaatatctaaatttgtttgtatatgatggttgtctaagaagtt 35075499  T
Q  105 gtcacaataaagggttgttcaaata 129  Q
    ||| |||||||||||||||||||||    
T  35075498 gtcccaataaagggttgttcaaata 35075474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 32872912 - 32872784
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcaca 110  Q
    ||||||||||||||||  || ||||| | |||||| |||||| |||||||  |||| ||||||   ||| |||| |||| ||||  ||  ||||||||||    
T  32872912 atactcacattgttctcatactttctttttctattgctttgacttttgtgttactacctaaatttctttttatattttgattgtccaacaagttgtcaca 32872813  T
Q  111 ataaagggttgttcaaataacattgctct 139  Q
    | |||||||||||||||||||||||||||    
T  32872812 agaaagggttgttcaaataacattgctct 32872784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 19981986 - 19981923
Alignment:
Q  25 cttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataattt 88  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||    
T  19981986 cttctactttctctttctattactttgatttttgtgccactatctaaatttttttgtataattt 19981923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 13089796 - 13089672
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcaca 110  Q
    ||||||||||| |  ||||| ||| |||||||||| |||||||||||||| ||||| ||||||   ||||||||||||  ||||  ||   ||||||| |    
T  13089796 atactcacattatcattctactttatctctctattgctttgatttttgtgtcactacctaaatttctttgtataatttaattgttcaaaaggttgtcata 13089697  T
Q  111 ataaagggttgttcaaataacattg 135  Q
    | ||| |||||||||||||||||||    
T  13089696 agaaatggttgttcaaataacattg 13089672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 31748414 - 31748520
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataac 131  Q
    ||||||| |||||| ||||||||||||||| || | ||||||   ||||||||||||| ||||  ||  ||||||||||| ||| | |||||||||||||    
T  31748414 tttctctatctattgctttgatttttgtgctacaacctaaatttctttgtataatttgattgtccaataagttgtcacaaaaaatgattgttcaaataac 31748513  T
Q  132 attgctc 138  Q
    || ||||    
T  31748514 atcgctc 31748520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 611915 - 612004
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgt 94  Q
    ||||| ||||||||||| |  || ||||||||||||||| | |||||||||||||| ||||| ||||||   |||||||||||| |||||    
T  611915 tctctcatactcacattatcattttattttctctctctactgctttgatttttgtgtcactacctaaatttctttgtataatttagttgt 612004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5168229 - 5168294
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||||||| ||||||||||| |  || || |||||||||||||| ||||||||||||||||||||    
T  5168229 tttatctctcatactcacattatctttttactttctctctctattgctttgatttttgtgccacta 5168294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 40364619 - 40364676
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgcc 62  Q
    ||||| ||||||||||| |  ||||| |||||||||||||||||||||||||||||||    
T  40364619 tctctcatactcacattatatttctactttctctctctattactttgatttttgtgcc 40364676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 12739850 - 12739912
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgt 94  Q
    |||||||||||||| |||||||||||||||  ||| ||||||   ||||||||||||||||||    
T  12739850 tttctctctctattgctttgatttttgtgcttctacctaaatttctttgtataatttggttgt 12739912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 12802673 - 12802735
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgt 94  Q
    |||||||||||||| |||||||||||||||  ||| ||||||   ||||||||||||||||||    
T  12802673 tttctctctctattgctttgatttttgtgcttctacctaaatttctttgtataatttggttgt 12802735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 29463046 - 29463104
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgcca 63  Q
    ||||| ||||||||||| |  || ||||||||||||||||| |||||||||||||||||    
T  29463046 tctctcatactcacattttgtttttattttctctctctattgctttgatttttgtgcca 29463104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 32478502 - 32478448
Alignment:
Q  19 attgttcttctattttctctctctattactttgatttttgtgccactatctaaat 73  Q
    |||| |||||||||||||||||||||| ||||||||||| || ||||| ||||||    
T  32478502 attgatcttctattttctctctctattgctttgatttttatgtcactacctaaat 32478448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 39195780 - 39195821
Alignment:
Q  17 acattgttcttctattttctctctctattactttgatttttg 58  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  39195780 acattgttcttctactttctctctctattgctttgatttttg 39195821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 39195824 - 39195927
Alignment:
Q  34 tctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacat 133  Q
    |||||||||||| |||||||||||||  ||||| ||||||   |||||||||| |||||||  ||  | ||||||||  |||   |||||||||||||||    
T  39195824 tctctctctattgctttgatttttgtatcactacctaaatttctttgtataatgtggttgtccaacaaattgtcacataaaaaaattgttcaaataacat 39195923  T
Q  134 tgct 137  Q
    ||||    
T  39195924 tgct 39195927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 22098306 - 22098364
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgcca 63  Q
    ||||| ||||||||||| |  || || |||||||||||||||||||||| |||||||||    
T  22098306 tctctcatactcacattatatttttactttctctctctattactttgatatttgtgcca 22098364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 36563046 - 36562944
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataac 131  Q
    |||||||||||||| ||| | |||||||| || || || |||   ||||| || |||||||||  ||  ||||||| ||| |||||||||||||||||||    
T  36563046 tttctctctctattgcttaggtttttgtgtcaataccttaatttctttgtgtagtttggttgtccaacaagttgtcccaacaaagggttgttcaaataac 36562947  T
Q  132 att 134  Q
    |||    
T  36562946 att 36562944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 42652646 - 42652777
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||||||||||||||||||||||||  |||||  ||||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||  ||||    
T  42652646 tctctgatactcacattgttcttctacattctc--tctattactttaattttcgtgccactatctaaatccatttatataatttagttgtataaaaagtt 42652743  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
    |||||||||||| |||||||||||||||||||||    
T  42652744 gtcacaataaagagttgttcaaataacattgctc 42652777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 36874121 - 36874001
Alignment:
Q  15 tcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataa 114  Q
    ||||||||||||||||||||||||||  |||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||  | || |||||||||    
T  36874121 tcacattgttcttctattttctctct--attattttgatttttgtaccactatctaaatccctttatataatttggttgtataaaaaattatcacaataa 36874024  T
Q  115 agggttgttcaaataacattgct 137  Q
    |||||||||||||||||||||||    
T  36874023 agggttgttcaaataacattgct 36874001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 33451583 - 33451451
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |||| | | ||||||||||||| |||| |||  ||||    
T  33451583 tctctcatactcacattgt-cttctactttctctctctattgctttgatttttgtgccactacctaatttc-tttgtataatttgattgtctaacaagtt 33451486  T
Q  105 gtcacaataaagggttgttcaaataacattgctct 139  Q
    ||||||| |||||||||||||||||||||||||||    
T  33451485 gtcacaagaaagggttgttcaaataacattgctct 33451451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 44090937 - 44091070
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||   |||||||||| |||||||  ||  ||||    
T  44090937 tctctcatacacacattgttcttctactttctctctctattgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaaaaagtt 44091036  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
    ||||||  ||| ||||||||||||||||||||||    
T  44091037 gtcacatgaaaaggttgttcaaataacattgctc 44091070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 34435757 - 34435624
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| ||||||||||||||| |||| ||||||||| ||||||| |||||||||||| ||||||   |||||||||| |||||||  ||  ||||    
T  34435757 tctctcatacacacattgttcttctactttcgctctctattgctttgatatttgtgccactacctaaatttctttgtataatgtggttgtgcaacaagtt 34435658  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
    ||||||  ||| ||||||||||||||||||||||    
T  34435657 gtcacataaaaaggttgttcaaataacattgctc 34435624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 1068657 - 1068791
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| ||||||||||||||| |||||||||||||| ||||||| |||||  ||||| ||||||   |||||||||| |||||||  ||  ||||    
T  1068657 tctctcatacacacattgttcttctactttctctctctattgctttgatatttgtaacactacctaaatttctttgtataatgtggttgtccaacaagtt 1068756  T
Q  105 gtcacaataaagggttgttcaaataacattgctct 139  Q
    ||||||  ||| |||||||||||||||||||||||    
T  1068757 gtcacataaaaaggttgttcaaataacattgctct 1068791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 33107881 - 33107749
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcaca 110  Q
    |||| ||||||||||||||| ||||||||||| || ||||||| ||||||| |||| ||||||   |||||||||| |||||||  ||  | ||||||||    
T  33107881 atacacacattgttcttctactttctctctctgttgctttgatatttgtgcaactacctaaatttctttgtataatgtggttgtccaacaaattgtcaca 33107782  T
Q  111 ataaagggttgttcaaataacattgctcttaat 143  Q
      ||| |||||||||||||||||||||||||||    
T  33107781 taaaaaggttgttcaaataacattgctcttaat 33107749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 25987811 - 25987672
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagt 100  Q
    ||||||||| ||||||||||| |  ||||| ||| |||||||||| |||||||||||||| ||||| ||||||   |||||||||||| |||||  ||      
T  25987811 tttatctctcatactcacattatcattctactttatctctctattgctttgatttttgtgtcactacctaaatttctttgtataatttagttgttcaaaa 25987712  T
Q  101 agttgtcacaataaagggttgttcaaataacattgctctt 140  Q
     |||||||||| ||| |||||||||||||||||| |||||    
T  25987711 ggttgtcacaagaaatggttgttcaaataacattactctt 25987672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 15716984 - 15716861
Alignment:
Q  17 acattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaag 116  Q
    |||||||||||||| |||||||||||||| ||||||| |||||  ||||| ||||||   |||||||||| |||||||  ||  ||||||||||  |||     
T  15716984 acattgttcttctactttctctctctattgctttgatatttgtatcactacctaaatttctttgtataatgtggttgtccaacaagttgtcacataaaaa 15716885  T
Q  117 ggttgttcaaataacattgctctt 140  Q
     |||||||||||||||||||||||    
T  15716884 agttgttcaaataacattgctctt 15716861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 26026953 - 26027082
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcaca 110  Q
    ||||||||||| |  || |||||||||| |||||| |||| ||||||||  ||||||||||||   |||||||||||||||||   ||  ||||||||||    
T  26026953 atactcacattatcattttattttctctttctattgctttaatttttgtatcactatctaaatttctttgtataatttggttggccaacaagttgtcaca 26027052  T
Q  111 ataaagggttgttcaaataacattgctctt 140  Q
    | |||  | |||||||||||||||||||||    
T  26027053 agaaatagctgttcaaataacattgctctt 26027082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 12241134 - 12241258
Alignment:
Q  16 cacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaa 115  Q
    |||||||||||||||  || |||||||||| ||||||||||| || ||||||||||||   |||||||||| |||||||  ||  | || |||||  |||    
T  12241134 cacattgttcttctacattatctctctattgctttgatttttatgtcactatctaaatttctttgtataatgtggttgtccaacaaattatcacataaaa 12241233  T
Q  116 gggttgttcaaataacattgctctt 140  Q
      |||||||||||||||||||||||    
T  12241234 aagttgttcaaataacattgctctt 12241258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 37172112 - 37172244
Alignment:
Q  6 ctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttg 105  Q
    |||| ||||| ||| ||| |||||||||||||| || |||||||||||||||||| || || ||||||   ||||||||||||||||||  ||  | |||    
T  37172112 ctctcatacttacactgtccttctattttctctttccattactttgatttttgtgtcattacctaaatttctttgtataatttggttgtccaacaaattg 37172211  T
Q  106 tcacaataaagggttgttcaaataacattgctc 138  Q
    | |||| |||   ||||||||||||||||||||    
T  37172212 ttacaagaaaaaattgttcaaataacattgctc 37172244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 28772117 - 28772010
Alignment:
Q  34 tctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacat 133  Q
    ||||||| ||||  ||||||||||||||||||| ||||||   |||||||||||| |||||  ||   |||||||||| ||| ||||||||||||| |||    
T  28772117 tctctctttattgttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatggttgttcaaatatcat 28772018  T
Q  134 tgctctta 141  Q
    ||||||||    
T  28772017 tgctctta 28772010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 44061768 - 44061902
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||| |  || || ||||||| ||| || |||||||||||||| ||||||||||||   ||||||||||||||||||  ||  | ||    
T  44061768 tctctcatactcacattatcattttactttctctttctgttgctttgatttttgtgtcactatctaaatttctttgtataatttggttgtccaacaaatt 44061867  T
Q  105 gtcacaataaagggttgttcaaataacattgctct 139  Q
     |||||| |||  ||||||||||||||||| ||||    
T  44061868 atcacaagaaatagttgttcaaataacattactct 44061902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 2730954 - 2730849
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataac 131  Q
    |||||||||| | | |||||||||||||||||||||||||||  ||||||||||||| ||| |  ||   |||||||||| |||  |||||||||||| |    
T  2730954 tttctctctcaactgctttgatttttgtgccactatctaaatttatttgtataatttagttattcaaaaggttgtcacaagaaattgttgttcaaatatc 2730855  T
Q  132 attgct 137  Q
    ||||||    
T  2730854 attgct 2730849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 45406004 - 45405915
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgt 94  Q
    ||||| ||||||||||||  |||||| ||||||||||||||  |||||||||||||  | ||| |||||  |||||||||||||||||||    
T  45406004 tctctcatactcacattgcccttctactttctctctctattgttttgatttttgtgttattatataaatttatttgtataatttggttgt 45405915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 9630188 - 9630307
Alignment:
Q  19 attgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaaggg 118  Q
    ||||| |||||||||||| |||||||| ||||||||||| |  ||||| ||||||   ||| |||||||| ||||| |||  | ||||||||| |||  |    
T  9630188 attgtccttctattttctttctctatttctttgatttttatatcactacctaaatttctttatataatttagttgtctaacaaattgtcacaaaaaatag 9630287  T
Q  119 ttgttcaaataacattgctc 138  Q
    ||||| ||||||||||||||    
T  9630288 ttgtttaaataacattgctc 9630307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 5601007 - 5600918
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgt 94  Q
    ||||| ||||||||||  || ||||| ||||||||| |||| |||||||||||||| ||| ||||||||   |||||| |||||||||||    
T  5601007 tctctcatactcacatgattattctactttctctctttattgctttgatttttgtgtcaccatctaaatttctttgtaaaatttggttgt 5600918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 5639613 - 5639702
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgt 94  Q
    ||||| ||||||||||  || ||||| ||||||||| |||| |||||||||||||| ||| ||||||||   |||||| |||||||||||    
T  5639613 tctctcatactcacatgattattctactttctctctttattgctttgatttttgtgtcaccatctaaatttctttgtaaaatttggttgt 5639702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 43397831 - 43397895
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatct 69  Q
    ||||| ||||||||||| || || || ||||||| |||||||||||| |||||||||||||||||    
T  43397831 tctctcatactcacattatttttttactttctctttctattactttggtttttgtgccactatct 43397895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 44825489 - 44825547
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgt 59  Q
    ||||||||| ||||||||||| ||  |||| |||||||||||||| |||||||||||||    
T  44825489 tttatctctcatactcacattatttatctactttctctctctattgctttgatttttgt 44825547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 32501217 - 32501156
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||| ||||||||||| || || ||  |||||||||||||||||||||||||||| |||||    
T  32501217 tctctcatactcacattatttttttacgttctctctctattactttgatttttgtgtcacta 32501156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 9629628 - 9629744
Alignment:
Q  19 attgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaaggg 118  Q
    |||||||||||| ||| | | ||||||  |||||||||||||| | |||| ||||   ||||||||||||||||||  ||  ||||||||  | |||  |    
T  9629628 attgttcttctactttttttttctattgttttgatttttgtgcaattatccaaatttctttgtataatttggttgtccaacaagttgtcatgagaaaaag 9629727  T
Q  119 ttgttcaaataacattg 135  Q
    |||||||||||||||||    
T  9629728 ttgttcaaataacattg 9629744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 34186663 - 34186718
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||||||||| |  || ||||||||||||||||||||||| |||||||| |||||    
T  34186663 atactcacattatctttttattttctctctctattactttggtttttgtgtcacta 34186718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 25830266 - 25830208
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgcca 63  Q
    ||||| ||||||||||| |  || || |||||||||||||||||||||| |||||||||    
T  25830266 tctctcatactcacattatatttttactttctctctctattactttgatatttgtgcca 25830208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 10692485 - 10692550
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||||||| ||||||||||| |  || || ||||||||||||||  |||| ||||||||||||||    
T  10692485 tttatctctcatactcacattatctttttactttctctctctattgttttggtttttgtgccacta 10692550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 4672050 - 4672166
Alignment:
Q  13 actcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaat 112  Q
    ||||||||||| |||||| |||||||||| | |  |||||||||||| ||||   ||||||   ||||||| |||||||||| |||   | ||||||||     
T  4672050 actcacattgtccttctactttctctctccaatgttttgatttttgtaccaccgcctaaatttctttgtattatttggttgtctaatagggtgtcacaag 4672149  T
Q  113 aaagggttgttcaaata 129  Q
    |||  ||||||||||||    
T  4672150 aaaaagttgttcaaata 4672166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 32809179 - 32809279
Alignment:
Q  34 tctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacat 133  Q
    ||||||||| ||| |||| ||||| ||||| ||  |||||   |||||||| ||| | |||||||  ||||||||||| |||| |||||| |||||||||    
T  32809179 tctctctctcttaatttggtttttatgccaatacttaaatttctttgtatattttagatgtataacaagttgtcacaacaaagagttgtttaaataacat 32809278  T
Q  134 t 134  Q
    |    
T  32809279 t 32809279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 55266076 - 55266209
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||| ||||||||| ||| || ||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| ||||    
T  55266076 tctctcatattcacattgtccttttactttctctctttattactttgatttttgtgtcactatctaaatccatttatataatttagttgtataagaagtt 55266175  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
     |||||||||||| ||||||||||||||||||||    
T  55266176 atcacaataaaggattgttcaaataacattgctc 55266209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 50050700 - 50050824
Alignment:
Q  17 acattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaag 116  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||||| || |||||||||  |||||||||||||||     
T  50050700 acattgttcttctattt-ctctctctaatactttgatttttatgccactatctaaatccctttgtataacttagttgtataaaaagttgtcacaataaat 50050798  T
Q  117 ggttgttcaaataacattgctcttaa 142  Q
     |||||||| ||||||||||||||||    
T  50050799 agttgttcatataacattgctcttaa 50050824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 51255797 - 51255938
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||  || ||||| |||||||||||||| |||||||||||||||||||||||||||   |||||| |||||||||||  ||  ||||    
T  51255797 tctctcatactcacatgattattctactttctctctctattgctttgatttttgtgccactatctaaatttctttgtaaaatttggttgtccaacaagtt 51255896  T
Q  105 gtcacaataaagggttgttcaaataacattgctcttaatata 146  Q
    ||||||||||| |||||| |||||||||||||||||| ||||    
T  51255897 gtcacaataaatggttgtacaaataacattgctcttattata 51255938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 39158156 - 39158297
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||| |||||||| ||||||| ||||||  |||| |||||||||| ||| ||||||   ||||||||||||||||||  ||  ||||    
T  39158156 tctctcatactcacattattcttctactttctctttctattgttttggtttttgtgccgctacctaaatttctttgtataatttggttgtccaataagtt 39158255  T
Q  105 gtcacaataaagggttgttcaaataacattgctcttaatata 146  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  39158256 gtcacaataaatggttgttcaaataacattgctcttattata 39158297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 5386423 - 5386557
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||| ||||| || |||||||||||||| ||||||||||||||  |||||||||||   |||||||||||| ||||| |||  ||||    
T  5386423 tctctcatactcacattattcttttactttctctctctattgctttgatttttgtgttactatctaaatttctttgtataatttagttgtctaaaaagtt 5386522  T
Q  105 gtcacaataaagggttgttcaaataacattgctct 139  Q
    ||||||| ||| ||||||||||||| |||||||||    
T  5386523 gtcacaagaaatggttgttcaaatatcattgctct 5386557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 21014104 - 21014180
Alignment:
Q  61 ccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacattgct 137  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  21014104 ccactatctaaatccctttgtataatttggttgtataagaagttgtcacaataaaaggttgttcaaataacattgct 21014180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 41262358 - 41262234
Alignment:
Q  12 tactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaa 111  Q
    |||||||||||| |||||| ||||| |||||||| ||||||||||||||||| |||||||||   ||||||| |||||||||| |||   ||||||||||    
T  41262358 tactcacattgtccttctactttctttctctattgctttgatttttgtgccattatctaaatttctttgtattatttggttgtctaataggttgtcacaa 41262259  T
Q  112 taaagggttgttcaaataacattgc 136  Q
     ||| ||||||||||||||||||||    
T  41262258 gaaaaggttgttcaaataacattgc 41262234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 38519844 - 38519979
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||  || ||||| |||||||||||||| ||||||||||||||||||||| |||||   |||||| |||||||||||  ||  ||||    
T  38519844 tctctcatactcacatgattattctactttctctctctattgctttgatttttgtgccactatttaaatttctttgtaaaatttggttgtccaacaagtt 38519943  T
Q  105 gtcacaataaagggttgttcaaataacattgctctt 140  Q
    ||||||||||| |||| | |||||||||||||||||    
T  38519944 gtcacaataaatggttatacaaataacattgctctt 38519979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 29227263 - 29227126
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| ||||||||||||||| |||||||||||||| ||||||| |||||| ||||| ||||||   |||||||||| |||||||  ||  | ||    
T  29227263 tctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgtcactacctaaatttctttgtataatatggttgtccaacaaatt 29227164  T
Q  105 gtcacaataaagggttgttcaaataacattgctcttaa 142  Q
    ||||||  ||| ||||||||||||||||||||||||||    
T  29227163 gtcacataaaaaggttgttcaaataacattgctcttaa 29227126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 26600219 - 26600086
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| ||||||||||||||| ||||| |||||||| |||| ||| |||||||||||||||| ||  |||||||||| |||||||  ||  | ||    
T  26600219 tctctcatacacacattgttcttctactttctttctctattgcttttattattgtgccactatctaattctttttgtataatgtggttgtccaacaaatt 26600120  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
    ||||||  |||  |||||||||||||||||||||    
T  26600119 gtcacataaaaatgttgttcaaataacattgctc 26600086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 18316015 - 18316123
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataac 131  Q
    ||||||| |||||| |||||||||||||| ||||| ||||||   ||||||||||||||||||  ||  |||||||| || ||| |||||||||||||||    
T  18316015 tttctctttctattgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaataac 18316114  T
Q  132 attgctctt 140  Q
    |||||||||    
T  18316115 attgctctt 18316123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 52204907 - 52205032
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcaca 110  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||  |||||   ||| ||||||||||||||  ||  |||| ||| |    
T  52204907 atactcacattgtttttctactttctctctctattgctttgatttttgtgtcactacttaaatttctttttataatttggttgtccaacaagttatcata 52205006  T
Q  111 ataaagggttgttcaaataacattgc 136  Q
    | ||| | |||||||||||| |||||    
T  52205007 agaaaagattgttcaaataatattgc 52205032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 14443276 - 14443384
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataac 131  Q
    |||||||||||||| |||| ||||||  ||||||| |||||| | |||||||||||| |||||  ||   |||||||||| ||| ||||||||||||| |    
T  14443276 tttctctctctattgctttaatttttacgccactacctaaattcctttgtataatttagttgtccaaaaggttgtcacaaaaaatggttgttcaaatatc 14443375  T
Q  132 attgctctt 140  Q
    |||||||||    
T  14443376 attgctctt 14443384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 51577692 - 51577802
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataac 131  Q
    |||||||||||||| |||||||||||||||||||| ||||||   ||| |||||||| |||||  ||   |||||||||| ||| |||| |||||||| |    
T  51577692 tttctctctctattgctttgatttttgtgccactacctaaatttctttatataatttagttgtccaaaaggttgtcacaagaaatggttattcaaatatc 51577791  T
Q  132 attgctcttaa 142  Q
    | |||||||||    
T  51577792 actgctcttaa 51577802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 54000749 - 54000878
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||| |  || || |||||||||||||| |||  |||| |||||||||| ||||||   |||||||||||| |||||  ||   |||    
T  54000749 tctctcatactcacattatcattttactttctctctctattgcttaaatttgtgtgccactacctaaatttctttgtataatttagttgtccaaaaggtt 54000848  T
Q  105 gtcacaataaagggttgttcaaataacatt 134  Q
    |||||||||||  |||||||||||||||||    
T  54000849 gtcacaataaatagttgttcaaataacatt 54000878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 2004202 - 2004075
Alignment:
Q  12 tactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaa 111  Q
    |||||||||||  |||||| |||||||||  ||| |||||||||||||  ||||| ||||||   ||| ||| ||||| |||| |||   ||| ||||||    
T  2004202 tactcacattgcccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttatattatttgattgtctaataggttatcacaa 2004103  T
Q  112 taaagggttgttcaaataacattgctct 139  Q
     ||| |||||||||||||||||||||||    
T  2004102 gaaaaggttgttcaaataacattgctct 2004075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 19651906 - 19651804
Alignment:
Q  38 tctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacattgct 137  Q
    |||||||||||||||||||| || ||||| ||||||   |||||||||||| |||||  ||   |||||||||| ||| ||||||||||||| |||| ||    
T  19651906 tctctattactttgatttttatgtcactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaaaaaatggttgttcaaatatcattact 19651807  T
Q  138 ctt 140  Q
    |||    
T  19651806 ctt 19651804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 36130377 - 36130292
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataat 86  Q
    ||||||||| |||| ||||||||||||||| ||| |||||||||| | |||||||||||| || || ||||||   ||||||||||    
T  36130377 tttatctctcatacacacattgttcttctactttttctctctattgccttgatttttgtgtcattacctaaatttctttgtataat 36130292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 50506470 - 50506572
Alignment:
Q  35 ctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacatt 134  Q
    ||||| ||||| |||||||||| ||||||||| ||||||   |||||||||||| |||||  ||   |||||||||| |||  |||||||||||||||||    
T  50506470 ctctccctattgctttgatttt-gtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatagttgttcaaataacatt 50506568  T
Q  135 gctc 138  Q
    ||||    
T  50506569 gctc 50506572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 13196965 - 13196819
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagt 100  Q
    ||||||||| ||||||||||| |  || || ||||||| || ||||||||||||||||| ||| ||  |||||   ||| |||| |||| || || ||      
T  13196965 tttatctctcatactcacattttgtttttactttctctatcgattactttgatttttgttccaatacttaaatttctttatatattttgattttacaaaa 13196866  T
Q  101 agttgtcacaataaagggttgttcaaataacattgctcttaatatat 147  Q
    ||||||| ||| |||  |||||||||||||||||  |||||||||||    
T  13196865 agttgtcccaacaaatagttgttcaaataacattcttcttaatatat 13196819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26732271 - 26732336
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||||||| ||||||||||| |  || |||||||||||||||||  |||| ||||||||||||||    
T  26732271 tttatctctcatactcacattatctttttattttctctctctattgttttggtttttgtgccacta 26732336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 38376480 - 38376447
Alignment:
Q  36 tctctctattactttgatttttgtgccactatct 69  Q
    ||||||||||||||||||||||||||||||||||    
T  38376480 tctctctattactttgatttttgtgccactatct 38376447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 46634146 - 46634211
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||||||| ||||||||||| |  || || ||||||| ||||||||||||||||||||| |||||    
T  46634146 tttatctctcatactcacattatctttttactttctctttctattactttgatttttgtgtcacta 46634211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 22813707 - 22813608
Alignment:
Q  40 tctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacattgctct 139  Q
    |||||| |||||||||||||| ||||| ||||||   ||| ||||||||  ||||  ||  ||||||||||| |||  |||||| |||||||||||||||    
T  22813707 tctattgctttgatttttgtgtcactacctaaatttctttatataatttaattgtccaacaagttgtcacaagaaaaagttgtttaaataacattgctct 22813608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1796006 - 1795944
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgcca 63  Q
    ||||||||| ||||||||||| |  || || ||| |||||||||||||||||| |||||||||    
T  1796006 tttatctctcatactcacattatatttttactttatctctctattactttgatatttgtgcca 1795944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 19232154 - 19232096
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgcca 63  Q
    ||||| ||||||||||| |  || || |||||||||||||| |||||||||||||||||    
T  19232154 tctctcatactcacattatatttttactttctctctctattgctttgatttttgtgcca 19232096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 26910279 - 26910313
Alignment:
Q  32 tttctctctctattactttgatttttgtgccacta 66  Q
    |||||||||||||| ||||||||||||||||||||    
T  26910279 tttctctctctattgctttgatttttgtgccacta 26910313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 31574960 - 31574906
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgt 59  Q
    ||||| ||||||||||| |  || ||||||||||||||||| |||||||||||||    
T  31574960 tctctcatactcacattatatttttattttctctctctattgctttgatttttgt 31574906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 49585045 - 49585103
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgcca 63  Q
    ||||| ||||||||||| |  || || |||||||||||||||||||||| |||||||||    
T  49585045 tctctcatactcacattatatttttactttctctctctattactttgatatttgtgcca 49585103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 50608639 - 50608581
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatct 69  Q
    ||||||||||| || || || || |||||||||||||||||||||||||| || |||||    
T  50608639 atactcacattatttttttacttcctctctctattactttgatttttgtgtcaatatct 50608581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 55609161 - 55609127
Alignment:
Q  29 tattttctctctctattactttgatttttgtgcca 63  Q
    |||||||||||||||||||||||||||| ||||||    
T  55609161 tattttctctctctattactttgattttcgtgcca 55609127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 193589 - 193634
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttt 56  Q
    ||||||||| |||  || ||||||||||||||||||||||||||||    
T  193589 atactcacactgtatttttattttctctctctattactttgatttt 193634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 10147080 - 10146975
Alignment:
Q  34 tctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacat 133  Q
    ||||||||| || |||| ||||||||| ||||| ||||||   ||||||||||||| ||||  ||  |||| |||||| ||| | ||||| |||||||||    
T  10147080 tctctctcttttgcttttatttttgtgtcactacctaaatttctttgtataatttgattgtccaacaagttatcacaagaaatgattgtttaaataacat 10146981  T
Q  134 tgctct 139  Q
    | ||||    
T  10146980 tactct 10146975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 10250536 - 10250475
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||| ||||||||||| |  || || |||||||||||||| ||||| ||||||||||||||    
T  10250536 tctctcatactcacattatctttttactttctctctctattgctttggtttttgtgccacta 10250475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 12138910 - 12138959
Alignment:
Q  12 tactcacattgttcttctattttctctctctattactttgatttttgtgc 61  Q
    |||||||||| || || || ||| ||||||||||||||||||||||||||    
T  12138910 tactcacattatttttttactttatctctctattactttgatttttgtgc 12138959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 24509412 - 24509343
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatcta 70  Q
    ||||||||| ||||||||||| || || || ||||||||||||||| |||| |||  ||| |||||||||    
T  24509412 tttatctctcatactcacattatttttttactttctctctctattattttggtttccgtgtcactatcta 24509343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 36123453 - 36123424
Alignment:
Q  32 tttctctctctattactttgatttttgtgc 61  Q
    ||||||||||||||||||||||||||||||    
T  36123453 tttctctctctattactttgatttttgtgc 36123424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 48494937 - 48494867
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaat 73  Q
    ||||||||| |||| |||||||||||||||  |  ||||||||||  |||||||||| | |||||||||||||    
T  48494937 tttatctctcatacacacattgttcttctacat--tctctctatttttttgatttttataccactatctaaat 48494867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 49365215 - 49365244
Alignment:
Q  30 attttctctctctattactttgatttttgt 59  Q
    ||||||||||||||||||||||||||||||    
T  49365215 attttctctctctattactttgatttttgt 49365244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 51225520 - 51225487
Alignment:
Q  30 attttctctctctattactttgatttttgtgcca 63  Q
    |||||||||||||||||||||| |||||||||||    
T  51225520 attttctctctctattactttggtttttgtgcca 51225487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 7632476 - 7632424
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgcca 63  Q
    ||||||||||| |  || || |||||||||||||| |||||||||||||||||    
T  7632476 atactcacattatatttttactttctctctctattgctttgatttttgtgcca 7632424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 40348844 - 40348908
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatct 69  Q
    ||||| ||||||||||| |  || || |||||||||||||| ||||| |||||||| ||||||||    
T  40348844 tctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactatct 40348908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 46880953 - 46881086
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||| |||||||||||| | ||||||||||||||||||||||||  ||||||||||||||    |||||||||||||||||||||  | ||    
T  46880953 tctctcatactcatattgttcttctactatctctctctattactttgattttttcgccactatctaaatgtcgttgtataatttggttgtataaaaaatt 46881052  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
    |||| |||||||||||||||||||||||||||||    
T  46881053 gtcataataaagggttgttcaaataacattgctc 46881086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 12007206 - 12007072
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||  |  ||||| |||||||||||||| |||||||||||||||||||||||||||   |||||| |||||||||||  ||  ||||    
T  12007206 tctctcatactcacatgatcattctactttctctctctattgctttgatttttgtgccactatctaaatttctttgtaaaatttggttgtccaacaagtt 12007107  T
Q  105 gtcacaataaagggttgttcaaataacattgctct 139  Q
    |||||||||||  ||||| ||||||||||||||||    
T  12007106 gtcacaataaatagttgtacaaataacattgctct 12007072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 32777727 - 32777594
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||| ||||||   ||||||||||||||||||  ||  ||||    
T  32777727 tctctcatactcacactgtccttctactttctctctccattactttgatttttgtgccactacctaaatttctttgtataatttggttgtccaacaagtt 32777628  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
     | |||| ||| | ||||||||||||||||||||    
T  32777627 attacaagaaaagattgttcaaataacattgctc 32777594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 43807833 - 43807700
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||||||||| || ||||||| ||||||| ||||||||||||| |||||  |||||   ||||||||||||||||||| ||  | ||    
T  43807833 tctctcatactcacattgttcttttactttctctttctattaatttgatttttgtgtcactacttaaatgtctttgtataatttggttgtacaacaaatt 43807734  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
    |||| || |||||||||||||||||||| |||||    
T  43807733 gtcataagaaagggttgttcaaataacactgctc 43807700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 15325646 - 15325525
Alignment:
Q  19 attgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaaggg 118  Q
    |||||||||||| ||||||||||||||  ||| ||||||||| ||||||||||||   |||||||||| |||||||  ||  ||||||||||  ||| ||    
T  15325646 attgttcttctactttctctctctattgtttttatttttgtgtcactatctaaatttttttgtataatgtggttgtccaacaagttgtcacataaaaagg 15325547  T
Q  119 ttgttcaaataacattgctctt 140  Q
    ||||||||||||||||||||||    
T  15325546 ttgttcaaataacattgctctt 15325525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 29723947 - 29723812
Alignment:
Q  5 tctctgatactcacattgttcttctattttctct--ctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtag 102  Q
    ||||| ||||||||||  |  |||||||||||||  ||||||| ||||||||||||| |||||||||||||   |||||| |||||||||||  ||  ||    
T  29723947 tctctcatactcacatgatcattctattttctctctctctattgctttgatttttgtaccactatctaaatttctttgtaaaatttggttgtccaacaag 29723848  T
Q  103 ttgtcacaataaagggttgttcaaataacattgctc 138  Q
    ||||||||||||| |||||| |||||||||||||||    
T  29723847 ttgtcacaataaatggttgtacaaataacattgctc 29723812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 37352161 - 37352294
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||| ||||||||  |||||| |||||||||||| |  ||||||||||||| ||||| ||||||  |||||||||||||||||||  ||  ||||    
T  37352161 tctctcatattcacattgcccttctactttctctctctactgttttgatttttgtgtcactacctaaatttatttgtataatttggttgtccaacaagtt 37352260  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
    |  |||| ||| ||||||||||||||||||||||    
T  37352261 ggtacaagaaatggttgttcaaataacattgctc 37352294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 34978347 - 34978482
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||| | ||| || |||||||||||||| ||||| |||||||||||||| ||||||   |||||||||||| |||||  ||   |||    
T  34978347 tctctcatactcacattatccttttactttctctctctattgctttgttttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggtt 34978446  T
Q  105 gtcacaataaagggttgttcaaataacattgctctt 140  Q
    ||||||| ||| ||||||| ||||| ||||||||||    
T  34978447 gtcacaagaaatggttgttaaaatatcattgctctt 34978482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 43081910 - 43081775
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| ||||||||||||||| |||||||||||||| |||| || |||||| ||||| ||||||   |||||||||| ||||||| |||  | ||    
T  43081910 tctcttatacacacattgttcttctactttctctctctattgctttaatatttgtgtcactacctaaatttctttgtataatgtggttgtctaacaaatt 43081811  T
Q  105 gtcacaataaagggttgttcaaataacattgctctt 140  Q
    ||||||  |||  |||||||||||||||||| ||||    
T  43081810 gtcacataaaaatgttgttcaaataacattgatctt 43081775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 33845099 - 33845228
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcaca 110  Q
    |||| ||||||||||||||| ||| | ||||| || |||||||||||||| ||||| ||||||   |||||||||| |||||||  ||  | ||||||||    
T  33845099 atacacacattgttcttctactttttttctctgttgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaacaaattgtcaca 33845198  T
Q  111 ataaagggttgttcaaataacattgctctt 140  Q
      ||| ||||||||||||||||||||||||    
T  33845199 tgaaaaggttgttcaaataacattgctctt 33845228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 2008823 - 2008719
Alignment:
Q  34 tctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacat 133  Q
    |||||||||||| ||||||| |||||||||||| ||||||   |||||||||| |||||||  ||  ||||||||||  ||| |||||||||||||||||    
T  2008823 tctctctctattgctttgatatttgtgccactacctaaatttctttgtataatgtggttgtccaacaagttgtcacataaaatggttgttcaaataacat 2008724  T
Q  134 tgctc 138  Q
    |||||    
T  2008723 tgctc 2008719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 13152643 - 13152777
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattacttt-gatttttgtgccactatctaaatccatttgtataatttggttgtataagtagt 103  Q
    ||||| ||||||||||| | ||| || |||||||||||||| |||| |||||||||||||||| ||||||   |||||||||||| |||||  ||   ||    
T  13152643 tctctcatactcacattatccttttactttctctctctattgcttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggt 13152742  T
Q  104 tgtcacaataaagggttgttcaaataacattgctc 138  Q
    ||||| || ||| ||||||||||||| ||||||||    
T  13152743 tgtcataagaaatggttgttcaaatatcattgctc 13152777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 27570394 - 27570528
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||  |  ||||| ||| | |||||||| |||||||||||||||||||||| ||||   |||||| |||||||||||  ||  ||||    
T  27570394 tctctcatactcacatgatcattctactttttttctctattgctttgatttttgtgccactatcaaaatttctttgtaaaatttggttgtccaataagtt 27570493  T
Q  105 gtcacaataaagggttgttcaaataacattgctct 139  Q
    |||||||||||  ||||| || |||||||||||||    
T  27570494 gtcacaataaatagttgtacagataacattgctct 27570528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 28249590 - 28249460
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||| ||||||| || || |||||| ||||||| || |||||||||||||| |||||  |||||   |||||||||||| |||||  ||  ||||    
T  28249590 tctctcatattcacattattattttattttatctctcttttgctttgatttttgtgtcactacttaaatttctttgtataatttagttgtccaaaaagtt 28249491  T
Q  105 gtcacaataaagggttgttcaaataacattg 135  Q
    ||||||| ||| |||||||||||||||||||    
T  28249490 gtcacaagaaatggttgttcaaataacattg 28249460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 26749055 - 26749190
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||||||| || || || || ||||| |||||||| |||||||| ||||||||  | |||||||  |||||||||||| |||||  ||    ||    
T  26749055 tctctcatactcactttatttttatactttctttctctattgctttgattgttgtgccataacctaaatctctttgtataatttagttgtccaaaagatt 26749154  T
Q  105 gtcacaataaagggttgttcaaataacattgctctt 140  Q
    ||||||| ||| ||||||||||||||||||||||||    
T  26749155 gtcacaaaaaatggttgttcaaataacattgctctt 26749190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 45420054 - 45419947
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataac 131  Q
    ||||||||||||||  ||||||||||||||||||| ||||||   |||||||||||| |||||  ||   ||||||| || ||| ||||||||||||||     
T  45420054 tttctctctctattgttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcaaaagaaatggttgttcaaataat 45419955  T
Q  132 attgctct 139  Q
    ||||||||    
T  45419954 attgctct 45419947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 3148798 - 3148896
Alignment:
Q  26 ttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttc 124  Q
    ||||| |||||||||||||||||||||| |||||| ||||||||||||  |||| |||||| |||||||  ||  ||||||||||  ||| ||||||||    
T  3148798 ttctactttctctctctattactttgatatttgtgtcactatctaaatttatttatataatgtggttgttcaacaagttgtcacataaaaaggttgttc 3148896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 33057457 - 33057561
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataac 131  Q
    |||||||||||||| ||||||||||||||  | || ||||||   ||||||| |||||||||| |||   |||||||||| ||| | |||||||||||||    
T  33057457 tttctctctctattgctttgatttttgtgttattacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaagattgttcaaataac 33057556  T
Q  132 attgc 136  Q
    |||||    
T  33057557 attgc 33057561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 21103069 - 21103193
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcaca 110  Q
    ||||| ||||| || || || ||| ||||| |||| ||||||||||| |||||||||||||||   ||||||||| || |||||  ||  |||| |||||    
T  21103069 atacttacattatttttttactttatctctttattgctttgatttttatgccactatctaaatttctttgtataagttagttgtccaacaagttatcaca 21103168  T
Q  111 ataaagggttgttcaaataacattg 135  Q
    | ||| ||||||||||||| |||||    
T  21103169 agaaatggttgttcaaatatcattg 21103193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 17945114 - 17945183
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatcta 70  Q
    ||||||||| ||||||||||| ||||| || |||||||||||||| ||||| |||  ||| |||||||||    
T  17945114 tttatctctcatactcacattattcttttactttctctctctattgctttggtttcggtgtcactatcta 17945183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 33776406 - 33776475
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatcta 70  Q
    ||||||||| ||||||||||| || ||  | |||||||||||||||||||| |||| ||| |||||||||    
T  33776406 tttatctctcatactcacattattttttaactttctctctctattactttggttttcgtgtcactatcta 33776475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 47448877 - 47448945
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaat 73  Q
    ||||| |||||||||||||  || || ||||| |||||||| ||||| |||||||||||||| ||||||    
T  47448877 tctctcatactcacattgtgtttttactttctttctctattgctttggtttttgtgccactacctaaat 47448945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 31398199 - 31398233
Alignment:
Q  29 tattttctctctctattactttgatttttgtgcca 63  Q
    |||||||||||||||||||||||||||| ||||||    
T  31398199 tattttctctctctattactttgattttcgtgcca 31398233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 40854675 - 40854617
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgcca 63  Q
    ||||| ||||||||||| |  || || |||||||||||||| |||||||||||||||||    
T  40854675 tctctcatactcacattatatttttactttctctctctattgctttgatttttgtgcca 40854617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 47684212 - 47684282
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatcc 75  Q
    ||||| ||| ||| ||||||||| || ||||| ||||||||| ||||||||||||| || | |||||||||    
T  47684212 tctctcatattcatattgttcttatactttctttctctattattttgatttttgtgtcaatgtctaaatcc 47684282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 33224899 - 33224932
Alignment:
Q  30 attttctctctctattactttgatttttgtgcca 63  Q
    |||||||||||||||||||||| |||||||||||    
T  33224899 attttctctctctattactttggtttttgtgcca 33224932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 38956639 - 38956578
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||| ||||||||||| |  || || |||||||||||||| ||||| ||||||||||||||    
T  38956639 tctctcatactcacattatctttttactttctctctctattgctttgttttttgtgccacta 38956578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 44189331 - 44189270
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccacta 66  Q
    ||||| ||||||||||| |  || || |||||||||||||||||||| |||||||| |||||    
T  44189331 tctctcatactcacattatctttttactttctctctctattactttggtttttgtgtcacta 44189270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 43025386 - 43025454
Alignment:
Q  1 tttatctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatct 69  Q
    ||||||||| ||||||| ||| |  || || ||| |||||||||| ||||| |||||||||||||||||    
T  43025386 tttatctctcatactcatattatctttttactttttctctctattgctttggtttttgtgccactatct 43025454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 48145581 - 48145633
Alignment:
Q  11 atactcacattgttcttctattttctctctctattactttgatttttgtgcca 63  Q
    ||||||||||| |  || || |||||||||||||||||||||| |||||||||    
T  48145581 atactcacattatatttttactttctctctctattactttgatatttgtgcca 48145633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 8973 - 8840
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||   |||||||||| |||||||  ||  ||||    
T  8973 tctctcatacacacattgttcttctactttctctctctattgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaaaaagtt 8874  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
    ||||||  ||| ||||||||||||||||||||||    
T  8873 gtcacatgaaaaggttgttcaaataacattgctc 8840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 8523 - 8656
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagtt 104  Q
    ||||| ||||||||||||| |||||| ||||||| |||||| |||||||||||||| ||| | ||||||   ||| |||||||| ||||| |||  ||||    
T  8523 tctctcatactcacattgtccttctactttctctttctattgctttgatttttgtgtcaccaactaaatttctttatataatttagttgtctaacaagtt 8622  T
Q  105 gtcacaataaagggttgttcaaataacattgctc 138  Q
    ||||||| |||  |||||||||||||||||||||    
T  8623 gtcacaagaaatagttgttcaaataacattgctc 8656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 101926 - 101790
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctct------attactttgatttttgtgccactatctaaatccatttgtataatttggttgtataa 98  Q
    ||||| ||||||||||||| ||||||||||||||||||      ||| ||||||||||| || ||||| ||||||   ||||||||||||||||||  ||    
T  101926 tctctcatactcacattgtccttctattttctctctctctctctattgctttgatttttatgtcactacctaaatttctttgtataatttggttgt-caa 101828  T
Q  99 gtagttgtcacaataaagggttgttcaaataacattgc 136  Q
      ||||||||||| |||||||||| |||||||||||||    
T  101827 caagttgtcacaagaaagggttgtgcaaataacattgc 101790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 11014 - 11119
Alignment:
Q  34 tctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataacat 133  Q
    |||||||||||| |||||||||||||||||||| ||||||   |||||||||||| |||||  ||   ||| ||| || |||||||||||||||||||||    
T  11014 tctctctctattgctttgatttttgtgccactaactaaatttctttgtataatttagttgtcgaaaaggttttcaaaagaaagggttgttcaaataacat 11113  T
Q  134 tgctct 139  Q
    ||||||    
T  11114 tgctct 11119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 28347 - 28279
Alignment:
Q  5 tctctgatactcacattgttcttctattttctctctctattactttgatttttgtgccactatctaaat 73  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  28347 tctctcatacacacattgttcttctactttctctctctattactttgatttttatgccactatataaat 28279  T

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Target: scaffold0276 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 1722 - 1828
Alignment:
Q  32 tttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttcaaataac 131  Q
    ||||||||| |||| |||||||||||||||||||||||||||   |||||||||||| |||||  ||   |||||| ||| ||| ||||||||| |||||    
T  1722 tttctctctttattgctttgatttttgtgccactatctaaatttctttgtataatttagttgtccaaaaggttgtcgcaagaaatggttgttcacataac 1821  T
Q  132 attgctc 138  Q
    |||||||    
T  1822 attgctc 1828  T

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Target: scaffold0184 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 13556 - 13444
Alignment:
Q  26 ttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttca 125  Q
    ||||| ||||||| |||||||||| |||||||||  ||||  ||||||   |||||||||||| |||||  ||  ||||||||||| |||| |||||| |    
T  13556 ttctactttctctttctattacttcgatttttgtatcactgcctaaatttctttgtataatttagttgtccaataagttgtcacaaaaaagagttgttta 13457  T
Q  126 aataacattgctc 138  Q
    |||||||||||||    
T  13456 aataacattgctc 13444  T

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Target: scaffold0078 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 59288 - 59400
Alignment:
Q  26 ttctattttctctctctattactttgatttttgtgccactatctaaatccatttgtataatttggttgtataagtagttgtcacaataaagggttgttca 125  Q
    ||||| ||||||| |||||||||| |||||||||  ||||  ||||||   |||||||||||| |||||  ||  ||||||||||| |||| |||||| |    
T  59288 ttctactttctctttctattacttcgatttttgtatcactgcctaaatttctttgtataatttagttgtccaataagttgtcacaaaaaagagttgttta 59387  T
Q  126 aataacattgctc 138  Q
    |||||||||||||    
T  59388 aataacattgctc 59400  T

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Target: scaffold0013 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 94875 - 94846
Alignment:
Q  32 tttctctctctattactttgatttttgtgc 61  Q
    ||||||||||||||||||||||||||||||    
T  94875 tttctctctctattactttgatttttgtgc 94846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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