View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14415_low_7 (Length: 356)
Name: NF14415_low_7
Description: NF14415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14415_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 31 - 226
Target Start/End: Complemental strand, 7822498 - 7822303
Alignment:
| Q |
31 |
gctcctaaagaatcatttctaaaatgattaagcaatgcttctaaaggagaaacactaattaatatatcattgtttaaagaagcttcaagtttcaccaaaa |
130 |
Q |
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| T |
7822498 |
gctcctaaaaaatcatttctaaaatgattaagcaatgcttctaaaggagaaatacgaattaatagatcgttgtttaaagaaacttcaagtttaaccaaaa |
7822399 |
T |
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| Q |
131 |
agtctacacaccgattctattctcttctctaagaatgtgagaagcagaaacatctcttttatggcttgactaagcacttcatgttgataacttttt |
226 |
Q |
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| T |
7822398 |
agtctacacaccgattctattctcttctctaagaatgtgagaagcagaaacatctcttttatggcttgactaagcacttcatgttgataacttttt |
7822303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 7822302 - 7822217
Alignment:
| Q |
256 |
tttgacgtgatattggtacttgacaatgggacagttgatagattgatgcaaagaagtaaatcagaatagcaaacaaactcattgat |
341 |
Q |
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| T |
7822302 |
tttgacgtgacattggtacttcacaacgggacagttgatagattgatgcaaagaagtaaatcagaatagcaaacaaactcattgat |
7822217 |
T |
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