View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14415_low_9 (Length: 329)
Name: NF14415_low_9
Description: NF14415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14415_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 30008769 - 30009068
Alignment:
| Q |
20 |
tttggcaccttcaatggcgacccatttcctcacaactccattttcttcagttctcaccaaccactctctaaaaccaccatcactctttcatgccaccctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30008769 |
tttggcaccttcaatggcgacccatttcctcacaactccattttcttcagttctcaccaaccactctctaaaaccaccatcactctttcatgccaccctt |
30008868 |
T |
|
| Q |
120 |
tctgcaaagtcaacccatctttctctcccttgcattagaaaaagctccattatgtgtagcccaacaactcttacaaggctcaattccagtttcttgcaaa |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30008869 |
tctgcaaagtcaacccctctttctctcccttgcattagaaaaagctccattatgtgtagcccaacaactcttacaaggctcaattccagtttcttgcaaa |
30008968 |
T |
|
| Q |
220 |
agggtgctcatggaaattccaaaagcagacaactttcaattaaatcaactggaactgattctgggagcacttcttcactgacccaaaatgtgagcctatg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30008969 |
agggtgctcatggaaattccaaaagcagacaactttcaattaaatcaactggaactgattctgggagcacttcttcactgacccaaaatgtgagtctatg |
30009068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 129 - 318
Target Start/End: Original strand, 30009895 - 30010084
Alignment:
| Q |
129 |
tcaacccatctttctctcccttgcattagaaaaagctccattatgtgtagcccaacaactcttacaaggctcaattccagtttcttgcaaaagggtgctc |
228 |
Q |
| |
|
||||||| ||||||||||||||| || |||| | |||||| |||||| || |||||||| ||| | ||||||||||||||||||||| |||||| ||| |
|
|
| T |
30009895 |
tcaacccctctttctctcccttgtatccaaaaacgttccattttgtgtaacctaacaactcctactatgctcaattccagtttcttgcacaagggttctc |
30009994 |
T |
|
| Q |
229 |
atggaaattccaaaagcagacaactttcaattaaatcaactggaactgattctgggagcacttcttcactgacccaaaatgtgagcctat |
318 |
Q |
| |
|
| | |||||| ||||||| ||| |||| | ||||||| ||| |||||||||||||| |||||||||||| || || |||||||| |||| |
|
|
| T |
30009995 |
aagaaaattcaaaaagcaaacagcttttacctaaatcagctgaaactgattctgggaacacttcttcactcactcataatgtgagtctat |
30010084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University