View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14416_low_1 (Length: 399)
Name: NF14416_low_1
Description: NF14416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14416_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 26700778 - 26700400
Alignment:
| Q |
17 |
attaaactgcaggaagactacatgtcagatgttctagtctaatcttaacttacttaatttcattacgaccggatcaaaaggctaaagtcaatgttatatt |
116 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26700778 |
attaaactgcaggaagtgtacatgtcagatgttctagtctaatcttaacttacttaatttcattacgaccggatcaaaaggctaaagtcaatgttatatt |
26700679 |
T |
|
| Q |
117 |
cata---gtatatatacttttcaattttcatgataagagtataatgttatatttatgcgatggcattaataaaacaatacatctagagtcaaagtaacat |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26700678 |
tatactagtatatatacttttcaattttcatgataagagtataatgttatatttatgcgatggcaataataaaacaatacatctagagtcaaagtaacat |
26700579 |
T |
|
| Q |
214 |
gatgcaaatggcctcttcaccaatcttgttcactattctcatcttcctcttccgttttcagcactcatcatcattctccctctcagttgaaaaattcgaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26700578 |
gatgcaaatggcctcttcaccaatcttgttcactattctcatcttcctcttccgttttcagcactcatcatcattctccctctcagttgaaaaattcgaa |
26700479 |
T |
|
| Q |
314 |
gacgacattatagtctcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgcttattcctttgcta |
392 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26700478 |
gatgacattatagtctcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgcttattcctttgcta |
26700400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 220 - 390
Target Start/End: Complemental strand, 26677399 - 26677229
Alignment:
| Q |
220 |
aatggcctcttcaccaatcttgttcactattctcatcttcctcttccgttttcagcactcatcatcattctccctctcagttgaaaaattcgaagacgac |
319 |
Q |
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| T |
26677399 |
aatggcctcttcactaaacttcttcacttttctcatcttgttcttccattttcaacattcatcatcattctccctctcagtggaaaaacccgaacaagac |
26677300 |
T |
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| Q |
320 |
attatagtctcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgcttattcctttgc |
390 |
Q |
| |
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|||||| | ||||| ||||||||||| || ||||| || || | || || |||||||||||||||||||| |
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| T |
26677299 |
attataatgtcacccaaaggtacatttaccgcaggcttttattccgtcggtgaaaatgcttattcctttgc |
26677229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 220 - 390
Target Start/End: Original strand, 26688691 - 26688861
Alignment:
| Q |
220 |
aatggcctcttcaccaatcttgttcactattctcatcttcctcttccgttttcagcactcatcatcattctccctctcagttgaaaaattcgaagacgac |
319 |
Q |
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|||||| ||||||| || ||| |||||| |||||||||| |||||| |||||| || ||||||||||||||||||||||| |||||| |||| | ||| |
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| T |
26688691 |
aatggcttcttcactaaacttcttcacttttctcatcttgttcttccattttcaacattcatcatcattctccctctcagtggaaaaacccgaacaagac |
26688790 |
T |
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| Q |
320 |
attatagtctcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgcttattcctttgc |
390 |
Q |
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| T |
26688791 |
attataatgtcacccaaaggtacatttaccgcaggcttttattccgtcggtgaaaatgcttattcctttgc |
26688861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 384
Target Start/End: Original strand, 26692869 - 26693007
Alignment:
| Q |
246 |
ctattctcatcttcctcttccgttttcagcactcatcatcattctccctctcagttgaaaaattcgaagacgacattatagtctcacctaaaggtacatt |
345 |
Q |
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||||||| ||||||||||| | |||||| ||||||||||||||||| ||||| ||||||||| |||||| || |||||| | ||||| ||||| ||||| |
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| T |
26692869 |
ctattcttatcttcctcttacattttcaacactcatcatcattctctctctcggttgaaaaacacgaagaagatattataatatcaccaaaaggcacatt |
26692968 |
T |
|
| Q |
346 |
cacagcaggtttctaccctgttggagaaaatgcttattc |
384 |
Q |
| |
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||| || ||||| || || || || |||||||||||||| |
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| T |
26692969 |
cactgcgggtttttatcccgtaggtgaaaatgcttattc |
26693007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 390
Target Start/End: Complemental strand, 26752952 - 26752792
Alignment:
| Q |
230 |
tcaccaatcttgttcactattctcatcttcctcttccgttttcagcactcatcatcattctccctctcagttgaaaaattcgaagacgacattatagtct |
329 |
Q |
| |
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||||||||||| || ||| |||||||||| ||||||| |||||| ||| | ||||| ||| |||||||||| ||||| ||| | |||| ||| ||| |
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| T |
26752952 |
tcaccaatcttcttaacttttctcatctttctcttccattttcaacacacctcatccttcaccctctcagtagaaaaccctgaacaaaacatcatactct |
26752853 |
T |
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| Q |
330 |
cacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgcttattcctttgc |
390 |
Q |
| |
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| T |
26752852 |
cccccaaaaaaaccttcacagcaggtttctaccctgtaggacaaaatgcttattcctttgc |
26752792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 229 - 384
Target Start/End: Complemental strand, 26746010 - 26745855
Alignment:
| Q |
229 |
ttcaccaatcttgttcactattctcatcttcctcttccgttttcagcactcatcatcattctccctctcagttgaaaaattcgaagacgacattatagtc |
328 |
Q |
| |
|
|||||||||||| || || ||| |||| || ||||||| |||||| || |||| |||||| ||||||||||| || | | ||| | |||||||||||| |
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| T |
26746010 |
ttcaccaatcttctttacaattttcattttgctcttccattttcaacattcattatcattttccctctcagtggagagacatgaaaatgacattatagtc |
26745911 |
T |
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| Q |
329 |
tcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgcttattc |
384 |
Q |
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||||| ||||| |||||||| || ||||| || || || || |||||||||||||| |
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| T |
26745910 |
tcacccaaaggcacattcaccgcgggtttttatcccgtaggtgaaaatgcttattc |
26745855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 384
Target Start/End: Complemental strand, 26715735 - 26715580
Alignment:
| Q |
229 |
ttcaccaatcttgttcactattctcatcttcctcttccgttttcagcactcatcatcattctccctctcagttgaaaaattcgaagacgacattatagtc |
328 |
Q |
| |
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||||||||| || ||||| |||||||| || || |||| |||||| || ||||||||||| ||||| ||||| || | | ||||| ||| |||||||| |
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| T |
26715735 |
ttcaccaattttcttcacaattctcattttgcttttccattttcaacattcatcatcattttccctgtcagtggagagacatgaagaagacgttatagtc |
26715636 |
T |
|
| Q |
329 |
tcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgcttattc |
384 |
Q |
| |
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||||| |||| |||||||| ||||| || || || || | |||||||||||||| |
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| T |
26715635 |
tcacccgaaggcacattcaccgcaggcttttatccggtacgtgaaaatgcttattc |
26715580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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