View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14416_low_2 (Length: 343)

Name: NF14416_low_2
Description: NF14416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14416_low_2
NF14416_low_2
[»] chr7 (3 HSPs)
chr7 (78-343)||(48521321-48521587)
chr7 (90-308)||(39440569-39440786)
chr7 (19-74)||(48520972-48521027)
[»] chr1 (2 HSPs)
chr1 (90-308)||(19192691-19192908)
chr1 (90-307)||(44199844-44200060)
[»] scaffold0683 (1 HSPs)
scaffold0683 (90-288)||(7478-7675)
[»] chr2 (2 HSPs)
chr2 (90-243)||(29467807-29467960)
chr2 (155-341)||(29467594-29467780)
[»] scaffold0557 (2 HSPs)
scaffold0557 (155-341)||(7471-7657)
scaffold0557 (125-243)||(7323-7444)
[»] chr6 (6 HSPs)
chr6 (125-243)||(18716158-18716278)
chr6 (155-341)||(14464502-14464688)
chr6 (123-243)||(15906147-15906269)
chr6 (166-307)||(18716300-18716439)
chr6 (186-243)||(14464418-14464475)
chr6 (90-163)||(14464345-14464418)
[»] chr5 (1 HSPs)
chr5 (123-243)||(42882125-42882248)
[»] chr8 (3 HSPs)
chr8 (123-243)||(7964014-7964136)
chr8 (123-243)||(8224613-8224737)
chr8 (166-305)||(7963800-7963937)
[»] chr4 (3 HSPs)
chr4 (155-308)||(19110984-19111137)
chr4 (123-243)||(19111164-19111286)
chr4 (257-295)||(8364635-8364673)
[»] scaffold0726 (2 HSPs)
scaffold0726 (155-341)||(4695-4881)
scaffold0726 (123-243)||(4908-5030)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 78 - 343
Target Start/End: Original strand, 48521321 - 48521587
Alignment:
Q  78 agtagatcaaaagatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatagcatatacttgctt 177  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48521321 agtagatcaaaagatatgggagcttttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatagcatatacttgctt 48521420  T
Q  178 ttaatatgattccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgactttt-aattttttcttcttctaagaataagacaaacatct 276  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  48521421 ttaatatgattccaaaatatcaatgtgaatctgtaagtatcatttacaaagcataatgacttttaaatttttttttcttctaagaataagacaaacatct 48521520  T
Q  277 tacatcatgttattgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaagaat 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48521521 tacatcatgttattgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaagaat 48521587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 90 - 308
Target Start/End: Original strand, 39440569 - 39440786
Alignment:
Q  90 gatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatagcatat--acttgcttttaatatgat 187  Q
    ||||| |||||| |||||  ||||| |||||||||||||||||| ||||||||||||||||||  |||||||||| ||||  ||||||| |||| |||||    
T  39440569 gatataggagatattcaacatataaatcatccacatatgggatggaaataggatattcaagataaaaaagcatagtatatatacttgctcttaagatgat 39440668  T
Q  188 tccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgacttttaattttttcttcttctaagaataagacaaacatcttacatcatgtt 287  Q
    |||||||| ||||||||||  |||||||||||||||||||||||| |||||||||| | |   |  |||||||||||| ||||||||||| |||| ||||    
T  39440669 tccaaaatttgaatgtgaacttgtaagtatcatttacaaagcatagtgacttttaaatat---tatttctaagaataatacaaacatcttgcatcgtgtt 39440765  T
Q  288 attgtgttgaccaattgaaac 308  Q
    ||||||||||||| |||||||    
T  39440766 attgtgttgaccacttgaaac 39440786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 48520972 - 48521027
Alignment:
Q  19 caaactggtgaatatgaaacgtaaaaaataattagccattgttatatattaaaata 74  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48520972 caaactggtgcatatgaaacgtaaaaaataattagccattgttatatattaaaata 48521027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 90 - 308
Target Start/End: Complemental strand, 19192908 - 19192691
Alignment:
Q  90 gatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatagcatata--cttgcttttaatatgat 187  Q
    ||||| |||||| |||||  ||||| |||||||||||||||| | ||||||||||||||||||  ||||| |||| |||||  |||||| || | |||||    
T  19192908 gatataggagatattcaacatataaatcatccacatatgggaagaaaataggatattcaagataaaaaagtatagtatatatacttgctctttagatgat 19192809  T
Q  188 tccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgacttttaattttttcttcttctaagaataagacaaacatcttacatcatgtt 287  Q
    |||| ||| ||||||||||  |||||||||||||||||||||||| |||||||||| | |   |  |||||||||||| |||||||||||||||| ||||    
T  19192808 tccataatttgaatgtgaacttgtaagtatcatttacaaagcatagtgacttttaaatat---tatttctaagaataatacaaacatcttacatcgtgtt 19192712  T
Q  288 attgtgttgaccaattgaaac 308  Q
    ||||||||||||| |||||||    
T  19192711 attgtgttgaccacttgaaac 19192691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 90 - 307
Target Start/End: Complemental strand, 44200060 - 44199844
Alignment:
Q  90 gatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatagcatata--cttgcttttaatatgat 187  Q
    ||||| |||||| |||||  ||||| |||||||||||||||||| |||||||||||| |||||  |||||||||  |||||  |||||| |||| |||||    
T  44200060 gatataggagatattcaacatataaatcatccacatatgggatggaaataggatattaaagataaaaaagcataatatatatacttgctcttaagatgat 44199961  T
Q  188 tccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgacttttaattttttcttcttctaagaataagacaaacatcttacatcatgtt 287  Q
    |||| ||| ||||||| ||  |||||||||||||||||||||||| |||||||||| | |   |  |||||||||||| |||||||||||  ||| ||||    
T  44199960 tccataatttgaatgtaaacttgtaagtatcatttacaaagcatagtgacttttaaatat---tatttctaagaataatacaaacatcttgtatcgtgtt 44199864  T
Q  288 attgtgttgaccaattgaaa 307  Q
    ||||||||||||| ||||||    
T  44199863 attgtgttgaccacttgaaa 44199844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 90 - 288
Target Start/End: Complemental strand, 7675 - 7478
Alignment:
Q  90 gatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatag--catatacttgcttttaatatgat 187  Q
    ||||| |||||| |||||  ||||| |||||||||||||||||| ||||||||||||||||||  ||||||||||   ||||||||||| |||| |||||    
T  7675 gatataggagatattcaacatataaatcatccacatatgggatggaaataggatattcaagataaaaaagcatagtctatatacttgctcttaagatgat 7576  T
Q  188 tccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgacttttaattttttcttcttctaagaataagacaaacatcttacatcatgtt 287  Q
    || | ||| |||| |||||  |||||||||||||||||||||||| ||| |||||| | |   |  |||||||||||| ||||||||||| |||| ||||    
T  7575 tctagaatttgaacgtgaacttgtaagtatcatttacaaagcatagtgatttttaaatat---tatttctaagaataatacaaacatcttgcatcgtgtt 7479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 90 - 243
Target Start/End: Complemental strand, 29467960 - 29467807
Alignment:
Q  90 gatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatagcatata--cttgcttttaatatgat 187  Q
    ||||| |||||| || || ||||||||  ||| ||||||||||  ||||||||||||||||||  |||||||||| |||||  |||||| |||  |||||    
T  29467960 gatataggagatattgaacctataatt--tcctcatatgggatagaaataggatattcaagataaaaaagcatagtatatatacttgctcttatgatgat 29467863  T
Q  188 tccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgacttttaa 243  Q
    |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  29467862 tccaaaatttgaatgtgaatttgtaagtatcatttacaaagcatattgacttttaa 29467807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 341
Target Start/End: Complemental strand, 29467780 - 29467594
Alignment:
Q  155 aaaagcatagcatata--cttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatca-tttacaaagcataatgacttttaattttttct 251  Q
    ||||||||||||||||  ||||||  ||| ||||||||||||| | ||||||||  ||||||||||| ||||||||||||| |||||||||| | |   |    
T  29467780 aaaagcatagcatatatacttgctcataaaatgattccaaaattttaatgtgaacttgtaagtatcattttacaaagcatattgacttttaaatat---t 29467684  T
Q  252 tcttctaagaataagacaaacatcttacatcatgttattgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaaga 341  Q
      || ||||||||| ||||  ||||| ||| |||||||||||||||||| |||||||  ||  || |||| ||||  |||||||||||||    
T  29467683 atttttaagaataatacaacaatcttgcattatgttattgtgttgaccacttgaaaccgtgtaagaaacatacttagatttaacagaaga 29467594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 155 - 341
Target Start/End: Original strand, 7471 - 7657
Alignment:
Q  155 aaaagcatagcatat--acttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatca-tttacaaagcataatgacttttaattttttct 251  Q
    |||||||||||||||  ||||||| |||| ||||||||||||| | ||||||||  ||||||||||| ||||||||||||| |||||||||| | |   |    
T  7471 aaaagcatagcatatatacttgctattaaaatgattccaaaattttaatgtgaacttgtaagtatcattttacaaagcatattgacttttaaatat---t 7567  T
Q  252 tcttctaagaataagacaaacatcttacatcatgttattgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaaga 341  Q
      || ||||||||| ||||||||||| |||||||||||||||||||||| |||||||  ||  ||||||| ||||  |||||||||||||    
T  7568 atttttaagaataatacaaacatcttgcatcatgttattgtgttgaccacttgaaaccgtgtaaggaacatacttagatttaacagaaga 7657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 7323 - 7444
Alignment:
Q  125 tatgggatgtaaataggatattcaagatccaaaa-gcatagcatat--acttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcatt 221  Q
    ||||||||  ||||||||||||||||||  |||| |||||| ||||  ||||||| |||| ||||||||||||| ||||||||||| |||||||||||||    
T  7323 tatgggatagaaataggatattcaagatgaaaaaagcatagtatatatacttgctcttaagatgattccaaaatttgaatgtgaatttgtaagtatcatt 7422  T
Q  222 tacaaagcataatgacttttaa 243  Q
    ||||||||||| ||||||||||    
T  7423 tacaaagcatattgacttttaa 7444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 18716158 - 18716278
Alignment:
Q  125 tatgggatgtaaataggatattcaagatccaaaagcatagcatat--acttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcattt 222  Q
    ||||||||  ||||||||||||||||||  |||||||||| ||||  ||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||    
T  18716158 tatgggatagaaataggatattcaagataaaaaagcatagtatatatacttgctcttaagatgattccaaaatttgaatgtgaatttgtaagtatcattt 18716257  T
Q  223 acaaagcataatgacttttaa 243  Q
    |||||||||| |||| |||||    
T  18716258 acaaagcatattgacatttaa 18716278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 341
Target Start/End: Original strand, 14464502 - 14464688
Alignment:
Q  155 aaaagcatagcatat--acttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatca-tttacaaagcataatgacttttaattttttct 251  Q
    |||||||||||||||  ||||||| |||| ||||||||||||| | ||||||||  ||||||||||| ||||||||||||| |||||||||| | |   |    
T  14464502 aaaagcatagcatatatacttgctcttaaaatgattccaaaattttaatgtgaacttgtaagtatcattttacaaagcatattgacttttaaatat---t 14464598  T
Q  252 tcttctaagaataagacaaacatcttacatcatgttattgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaaga 341  Q
      || ||||||||| ||||||||||| |||||||||| ||||||||||| |||||||  ||  ||||||| ||||  |||||||||||||    
T  14464599 atttttaagaataatacaaacatcttgcatcatgttactgtgttgaccacttgaaaccgtgtaaggaacatacttagatttaacagaaga 14464688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 15906269 - 15906147
Alignment:
Q  123 catatgggatgtaaataggatattcaagatccaaaagcatag--catatacttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcat 220  Q
    ||||||||||  ||||||||||||||||||  |||| || ||   ||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||    
T  15906269 catatgggatagaaataggatattcaagataaaaaaacaaagtatatatacttgctcttaagatgattccaaaatttgaatgtgaatttgtaagtatcat 15906170  T
Q  221 ttacaaagcataatgacttttaa 243  Q
    |||||||||||| ||||||||||    
T  15906169 ttacaaagcatattgacttttaa 15906147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 166 - 307
Target Start/End: Original strand, 18716300 - 18716439
Alignment:
Q  166 atatacttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatca-tttacaaagcataatgacttttaattttttcttcttctaagaata 264  Q
    ||||||||||| |||| ||||||||||||| | ||||| ||  ||||||||||| ||||||||||||| |||||||||| | |   |  || ||||||||    
T  18716300 atatacttgctcttaaaatgattccaaaattttaatgtaaacttgtaagtatcattttacaaagcatattgacttttaaatat---tatttttaagaata 18716396  T
Q  265 agacaaacatcttacatcatgttattgtgttgaccaattgaaa 307  Q
    | |||||||| || |||||||||| ||||||||||| ||||||    
T  18716397 atacaaacatattgcatcatgttaatgtgttgaccacttgaaa 18716439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 14464418 - 14464475
Alignment:
Q  186 attccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgacttttaa 243  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  14464418 attccaaaatttgaatgtgaatttgtaagtatcatttacaaagcatattgacttttaa 14464475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 14464345 - 14464418
Alignment:
Q  90 gatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcata 163  Q
    ||||| |||||| || || |||||| |||||| ||||||||||  ||||||||||||||||||  |||||||||    
T  14464345 gatataggagatcttgaacctataaatcatcctcatatgggatagaaataggatattcaagataaaaaagcata 14464418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 42882248 - 42882125
Alignment:
Q  123 catatgggatgtaaataggatattcaagatccaaaa-gcatagcatata--cttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatca 219  Q
    ||||||||||  ||||||||||||||||||  |||| ||||||||||||  |||||| |||| |||||| |||||| ||||||||||| |||||||||||    
T  42882248 catatgggatagaaataggatattcaagataaaaaaagcatagcatatatacttgctcttaagatgatttcaaaatttgaatgtgaatttgtaagtatca 42882149  T
Q  220 tttacaaagcataatgacttttaa 243  Q
    ||||||||||||| ||||||||||    
T  42882148 tttacaaagcatattgacttttaa 42882125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 7964136 - 7964014
Alignment:
Q  123 catatgggatgtaaataggatattcaagatccaaaagcatagcatata--cttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcat 220  Q
    ||||||||||  |||||||||| |||||||  |||||||||| |||||  |||||| |||| ||||||||||||| ||||||||||| ||||||||||||    
T  7964136 catatgggatagaaataggatagtcaagataaaaaagcatagtatatatacttgctcttaagatgattccaaaatttgaatgtgaatttgtaagtatcat 7964037  T
Q  221 ttacaaagcataatgacttttaa 243  Q
    |||||||| ||| ||||||||||    
T  7964036 ttacaaagaatattgacttttaa 7964014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 243
Target Start/End: Original strand, 8224613 - 8224737
Alignment:
Q  123 catatgggatgtaaataggatattcaagat--ccaaaagcatag--catatacttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatc 218  Q
    ||||||||||  ||||||||||||||||||    ||||||||||   |||||||| || |||| |||||| |||||| ||||||||||| ||||||||||    
T  8224613 catatgggatagaaataggatattcaagataaaaaaaagcatagtatatatacttactcttaagatgatttcaaaatttgaatgtgaatttgtaagtatc 8224712  T
Q  219 atttacaaagcataatgacttttaa 243  Q
    |||||||||||||| ||||||||||    
T  8224713 atttacaaagcatattgacttttaa 8224737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 305
Target Start/End: Complemental strand, 7963937 - 7963800
Alignment:
Q  166 atatacttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatca-tttacaaagcataatgacttttaattttttcttcttctaagaata 264  Q
    ||||||||||| |||| ||||||| ||||| | ||||||||    ||||||||| ||||||||||||| |||||||||| | |   |  || ||||||||    
T  7963937 atatacttgctcttaaaatgattctaaaattttaatgtgaactgttaagtatcattttacaaagcatattgacttttaaatat---tatttttaagaata 7963841  T
Q  265 agacaaacatcttacatcatgttattgtgttgaccaattga 305  Q
      ||||||||||| |||| ||||||||||||||||| ||||    
T  7963840 gtacaaacatcttgcatcgtgttattgtgttgaccacttga 7963800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 155 - 308
Target Start/End: Complemental strand, 19111137 - 19110984
Alignment:
Q  155 aaaagcatagcatata--cttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatca-tttacaaagcataatgacttttaattttttct 251  Q
    ||||||||||||||||  |||||| |||| ||||||||||||| | ||||||||  ||||||||||| ||||||||||||| |||||||||| | |   |    
T  19111137 aaaagcatagcatatatacttgctcttaaaatgattccaaaattttaatgtgaacttgtaagtatcattttacaaagcatattgacttttaaatat---t 19111041  T
Q  252 tcttctaagaataagacaaacatcttacatcatgttattgtgttgaccaattgaaac 308  Q
      || ||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  19111040 atttttaagaataatacaaacatcttgcatcatgttattgtgttgaccacttgaaac 19110984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 19111286 - 19111164
Alignment:
Q  123 catatgggatgtaaataggatattcaagatccaaaagcatagcatata--cttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcat 220  Q
    ||||||||||  ||||||||||||||||||  |||||||||  |||||  |||||| |||| |||||| |||||| ||||||||||| ||||||||||||    
T  19111286 catatgggatagaaataggatattcaagataaaaaagcatattatatatacttgctcttaagatgatttcaaaatttgaatgtgaatttgtaagtatcat 19111187  T
Q  221 ttacaaagcataatgacttttaa 243  Q
    |||||||||||| ||||||||||    
T  19111186 ttacaaagcatattgacttttaa 19111164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 8364673 - 8364635
Alignment:
Q  257 taagaataagacaaacatcttacatcatgttattgtgtt 295  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  8364673 taagaataatacaaacatcttacattatgttattgtgtt 8364635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 155 - 341
Target Start/End: Complemental strand, 4881 - 4695
Alignment:
Q  155 aaaagcatagcatata--cttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcattt-acaaagcataatgacttttaattttttct 251  Q
    ||||||||||||||||  |||| | |||| ||||||||||||| | ||||||||  |||||||||||||| |||||||||| |||||||||| | ||  |    
T  4881 aaaagcatagcatatatacttggtcttaaaatgattccaaaattttaatgtgaacttgtaagtatcattttacaaagcatattgacttttaaatattatt 4782  T
Q  252 tcttctaagaataagacaaacatcttacatcatgttattgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaaga 341  Q
    | |   |||||||| ||||||||||| |||||||||| ||||||||||| |||||||  ||  ||||||| ||||  |||||||||||||    
T  4781 ttt---aagaataatacaaacatcttgcatcatgttaatgtgttgaccacttgaaaccgtgtaaggaacatacttagatttaacagaaga 4695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 5030 - 4908
Alignment:
Q  123 catatgggatgtaaataggatattcaagatccaaaagcatag--catatacttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcat 220  Q
    ||||||||||  ||||||||||||||||||  |||| || ||   ||||||||||| |||| ||||||||||||| ||||||||||| | ||||||||||    
T  5030 catatgggatagaaataggatattcaagataaaaaaacaaagtatatatacttgctcttaagatgattccaaaatttgaatgtgaatttataagtatcat 4931  T
Q  221 ttacaaagcataatgacttttaa 243  Q
    |||||||||||| ||||||||||    
T  4930 ttacaaagcatattgacttttaa 4908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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