View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14416_low_3 (Length: 338)
Name: NF14416_low_3
Description: NF14416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14416_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 321
Target Start/End: Original strand, 10265722 - 10266016
Alignment:
| Q |
25 |
tagttaaattaaattttcaaattcggcatcataattttcaagactctttatttgttgtacaaagggttccccttagatgaaggatcttgatttagatgca |
124 |
Q |
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| T |
10265722 |
tagttaaattaaattttcaaattcggcatcataattttcaagacactttatttgt---acaaagggttccccttagatgaaggatcttcctttagatgca |
10265818 |
T |
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| Q |
125 |
ctgggttacaatgccnnnnnnnnnnnnnnnngttattattcctttctttttacaactaaaccacccc-catgaacaaaatttcattctctccatcatact |
223 |
Q |
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| T |
10265819 |
cagggttacaatgccaaatagaaaataaaaagttattattcctttctttttacaactaaaccaccccccatgaacaaaattttattctctccatcatact |
10265918 |
T |
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| Q |
224 |
acccaagtctgggatttggattcccttgtcatttctctcatgttattcgtgctgcactaagtcatgattattcctctccaatgcaacgctactttagt |
321 |
Q |
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| T |
10265919 |
acccaagtctgggatttggatcctcttgtcatttctctcatgttattcgtgctgcactaagtcatgattattcctctccgatgcaacgccactttagt |
10266016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 10284737 - 10285041
Alignment:
| Q |
13 |
aatatatcgttatagttaaattaaattttcaaattcggcatcataattttcaagactctttatttgttgtacaaagggttccccttagatgaaggatctt |
112 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10284737 |
aatatatcgtta--gttaaattaaattttcaaattcggcatcataattttcatgactctttatttgt---acaaagggttccccttagatgaaggatctt |
10284831 |
T |
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| Q |
113 |
gatttagatgcactgggttacaatgccnnnnnnnnnnnnnnnngttattattcctttctttttacaactaaaccacccc-catgaacaaaatttcattct |
211 |
Q |
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| T |
10284832 |
cctttagatgcacagggttacaatgccaaatagaaaataaaaagttattattcctttctttttacaactaaaccaccccccatgaacaaaattttattct |
10284931 |
T |
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| Q |
212 |
ctccatcatactacccaagtctgggatttggattcccttgtcatttctctcatgttattcgtgctgcactaagtcatgattattcctctccaatgcaacg |
311 |
Q |
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||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
10284932 |
ctccatcatactacccaagtctgggatttggatcctcttatcatttctctcatgttattcgtgctgcattaagtcatgattattcctctccgatgcaacg |
10285031 |
T |
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| Q |
312 |
ctactttagt |
321 |
Q |
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| |||||||| |
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| T |
10285032 |
ccactttagt |
10285041 |
T |
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