View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14417_high_6 (Length: 357)
Name: NF14417_high_6
Description: NF14417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14417_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 38336389 - 38336710
Alignment:
| Q |
19 |
tttggcgggttggatgatagataaggttttcaccatcactgttgataatgctagttcaaatgatcttgctatctcttacctgaaaaataggatggaggat |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336389 |
tttggagggttggatgatagataaggttttcaccatcactgttgataatgctagttcaaatgatcttgctatctcttacctgaaaaataggatggaggat |
38336488 |
T |
|
| Q |
119 |
tggaattcacatccgttaaaaggggagcatttacacgttaggtgttgtgcccacattcttaaccttgttgtaggtgatgggttgaagtcaaaggacatgc |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336489 |
tggaattcacatcctttaaaaggggagcatttacacgttaggtgttgtgcccacattcttaaccttgttgtaggtgatgggttgaagtcaaaggacatgc |
38336588 |
T |
|
| Q |
219 |
actcttcaatttccaaaattaggaatgcggttcgatatgttcgtgggtcagctagtcgtttggataggtttaagatatgtattaaagaagctaggataca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336589 |
actcttcaatttccaaaattaggaatgcggttcgatatgttcgtgggtcagctagtcgtttggataggtttaagatatgtattaaagaagctaggataca |
38336688 |
T |
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| Q |
319 |
agacaagtctacagtgcagtat |
340 |
Q |
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|||||||||||||||||||||| |
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| T |
38336689 |
agacaagtctacagtgcagtat |
38336710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 29638658 - 29638337
Alignment:
| Q |
19 |
tttggcgggttggatgatagataaggttttcaccatcactgttgataatgctagttcaaatgatcttgctatctcttacctgaaaaataggatggaggat |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29638658 |
tttggagggttggatgatagataaggttttcaccatcactgttgataatgctagtttaaatgatcttgctatctcttacctgaaaaataggatggaggat |
29638559 |
T |
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| Q |
119 |
tggaattcacatccgttaaaaggggagcatttacacgttaggtgttgtgcccacattcttaaccttgttgtaggtgatgggttgaagtcaaaggacatgc |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29638558 |
tggaattcacatccgttaaaaggggagcatttacatgttaggtgttgtgcccacattcttaaccttgttgtaggtgatgggttgaagtcaaaggacatgc |
29638459 |
T |
|
| Q |
219 |
actcttcaatttccaaaattaggaatgcggttcgatatgttcgtgggtcagctagtcgtttggataggtttaagatatgtattaaagaagctaggataca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29638458 |
actcttcaatttccaaaattaggaatgcggttcgatatgttcgtgggtcagctagtcgtttggataggtttaagatatgtattaaagaagctaggataca |
29638359 |
T |
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| Q |
319 |
agacaagtctacagtgcagtat |
340 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
29638358 |
agacaagtctacagtgcagtat |
29638337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 20418664 - 20418343
Alignment:
| Q |
19 |
tttggcgggttggatgatagataaggttttcaccatcactgttgataatgctagttcaaatgatcttgctatctcttacctgaaaaataggatggaggat |
118 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418664 |
tttggagggttggatgatagataaggttttcaccatcactgttgataatgctagttcaaatgatcttgctatctcttacctgaaaaataggatggaggat |
20418565 |
T |
|
| Q |
119 |
tggaattcacatccgttaaaaggggagcatttacacgttaggtgttgtgcccacattcttaaccttgttgtaggtgatgggttgaagtcaaaggacatgc |
218 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418564 |
tggaattcacatcctttataaggggagcatttacacgttaggtgttgtgcccacattcttaaccttgttgtaggtgatgggttgaagtcaaaggacatgt |
20418465 |
T |
|
| Q |
219 |
actcttcaatttccaaaattaggaatgcggttcgatatgttcgtgggtcagctagtcgtttggataggtttaagatatgtattaaagaagctaggataca |
318 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418464 |
attcttcaatttccaaaattaggaatgcggttcgatatgttcgtgggtcagctagtcgtttggataggtttaagatatgtattaaagaagctaggataca |
20418365 |
T |
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| Q |
319 |
agacaagtctacagtgcagtat |
340 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
20418364 |
agacaattctacagtgcagtat |
20418343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 11217561 - 11217510
Alignment:
| Q |
45 |
ttttcaccatcactgttgataatgctagttcaaatgatcttgctatctctta |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11217561 |
ttttcaccatcactgttgataatgctagttcaaatgatcttgctatccctta |
11217510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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