View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14417_high_7 (Length: 339)

Name: NF14417_high_7
Description: NF14417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14417_high_7
NF14417_high_7
[»] chr4 (5 HSPs)
chr4 (222-334)||(45965102-45965214)
chr4 (225-334)||(27726773-27726882)
chr4 (225-334)||(32998483-32998592)
chr4 (225-334)||(27731308-27731417)
chr4 (225-334)||(45969640-45969749)
[»] chr1 (3 HSPs)
chr1 (222-334)||(49221344-49221456)
chr1 (221-334)||(25484682-25484795)
chr1 (225-334)||(29283349-29283458)
[»] chr6 (4 HSPs)
chr6 (225-334)||(29302837-29302946)
chr6 (225-334)||(29307364-29307473)
chr6 (225-334)||(30485784-30485893)
chr6 (112-208)||(12407809-12407905)
[»] chr3 (1 HSPs)
chr3 (225-334)||(1747115-1747224)
[»] chr2 (4 HSPs)
chr2 (222-334)||(42914208-42914320)
chr2 (225-334)||(42299681-42299790)
chr2 (225-334)||(42304217-42304326)
chr2 (225-334)||(42909651-42909760)
[»] chr8 (2 HSPs)
chr8 (225-334)||(21609804-21609913)
chr8 (225-334)||(22757478-22757587)
[»] chr5 (5 HSPs)
chr5 (225-334)||(12525560-12525669)
chr5 (225-334)||(35840818-35840927)
chr5 (225-334)||(35845352-35845461)
chr5 (224-334)||(12530095-12530208)
chr5 (225-291)||(40902709-40902775)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 222 - 334
Target Start/End: Original strand, 45965102 - 45965214
Alignment:
222 aactgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcacca 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
45965102 aactgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcacca 45965201  T
322 cctagaataatct 334  Q
    |||||||||||||    
45965202 cctagaataatct 45965214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 27726882 - 27726773
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
27726882 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 27726783  T
325 agaataatct 334  Q
    ||||||||||    
27726782 agaataatct 27726773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 32998592 - 32998483
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
32998592 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 32998493  T
325 agaataatct 334  Q
    ||||||||||    
32998492 agaataatct 32998483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 27731417 - 27731308
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
27731417 tgttagaaattaaatcaagaaatatctagaagagtataaaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 27731318  T
325 agaataatct 334  Q
    ||||||||||    
27731317 agaataatct 27731308  T

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Target: chr4; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 225 - 334
Target Start/End: Original strand, 45969640 - 45969749
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
45969640 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccccct 45969739  T
325 agaataatct 334  Q
    ||||||||||    
45969740 agaataatct 45969749  T

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Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 222 - 334
Target Start/End: Complemental strand, 49221456 - 49221344
Alignment:
222 aactgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcacca 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
49221456 aactgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcacca 49221357  T
322 cctagaataatct 334  Q
    |||||||||||||    
49221356 cctagaataatct 49221344  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 221 - 334
Target Start/End: Complemental strand, 25484795 - 25484682
Alignment:
221 aaactgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcacc 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
25484795 aaactgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcacc 25484696  T
321 acctagaataatct 334  Q
     |||||||||||||    
25484695 tcctagaataatct 25484682  T

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Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 29283458 - 29283349
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
29283458 tgttagaaagtaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 29283359  T
325 agaataatct 334  Q
    ||||||||||    
29283358 agaataatct 29283349  T

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Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 225 - 334
Target Start/End: Original strand, 29302837 - 29302946
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
29302837 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 29302936  T
325 agaataatct 334  Q
    ||||||||||    
29302937 agaataatct 29302946  T

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Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 225 - 334
Target Start/End: Original strand, 29307364 - 29307473
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
29307364 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 29307463  T
325 agaataatct 334  Q
    ||||||||||    
29307464 agaataatct 29307473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 225 - 334
Target Start/End: Original strand, 30485784 - 30485893
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
30485784 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 30485883  T
325 agaataatct 334  Q
    ||||||||||    
30485884 agaataatct 30485893  T

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Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 12407809 - 12407905
Alignment:
112 tcttcctccaatccaattgttcatttccccttctgtagtttgatttgcaactcttcttttcccatgaacatcttcaacatctatgaattaataacct 208  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||| || || ||||||||| |||||||||||||||    
12407809 tcttcctccaatccaattattcatttccccttctgttgtttgatttgcaactcttcttctcccataaagatattcaacatccatgaattaataacct 12407905  T

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Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 1747224 - 1747115
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
1747224 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 1747125  T
325 agaataatct 334  Q
    ||||||||||    
1747124 agaataatct 1747115  T

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Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 222 - 334
Target Start/End: Complemental strand, 42914320 - 42914208
Alignment:
222 aactgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcacca 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||    
42914320 aactgttagaaattaaatcaagaaatatctagaagagtatagaagcttagagttactctttgtcattaagagttaaaaatatctatattatgtagcacca 42914221  T
322 cctagaataatct 334  Q
    |||||||||||||    
42914220 cctagaataatct 42914208  T

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Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 225 - 334
Target Start/End: Original strand, 42299681 - 42299790
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
42299681 tgttagaaattaaatcaagaaatatctagaagagtatagaagtttggagttactctttatcattaagagttaaaaatatctatattatgtagcaccacct 42299780  T
325 agaataatct 334  Q
    ||||||||||    
42299781 agaataatct 42299790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 225 - 334
Target Start/End: Original strand, 42304217 - 42304326
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
42304217 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtaacaccacct 42304316  T
325 agaataatct 334  Q
    ||||||||||    
42304317 agaataatct 42304326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 42909760 - 42909651
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
42909760 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttagagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 42909661  T
325 agaataatct 334  Q
    ||||||||||    
42909660 agaataatct 42909651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 225 - 334
Target Start/End: Original strand, 21609804 - 21609913
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
21609804 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttgaagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 21609903  T
325 agaataatct 334  Q
    ||||||||||    
21609904 agaataatct 21609913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 22757587 - 22757478
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
22757587 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttgaagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 22757488  T
325 agaataatct 334  Q
    ||||||||||    
22757487 agaataatct 22757478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 12525669 - 12525560
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
12525669 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccatct 12525570  T
325 agaataatct 334  Q
    ||||||||||    
12525569 agaataatct 12525560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 225 - 334
Target Start/End: Original strand, 35840818 - 35840927
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||    
35840818 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttattctttttcattaagagttaaaaatatctatattatgtagcaccacct 35840917  T
325 agaataatct 334  Q
    ||||||||||    
35840918 agaataatct 35840927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 225 - 334
Target Start/End: Original strand, 35845352 - 35845461
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||    
35845352 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttattctttttcattaagagttaaaaatatctatattatgtagcaccacct 35845451  T
325 agaataatct 334  Q
    ||||||||||    
35845452 agaataatct 35845461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 224 - 334
Target Start/End: Complemental strand, 12530208 - 12530095
Alignment:
224 ctgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatct---atattatgtagcacc 320  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||   |||||||||||||||    
12530208 ctgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctataatattatgtagcacc 12530109  T
321 acctagaataatct 334  Q
    | ||||||||||||    
12530108 atctagaataatct 12530095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 40902709 - 40902775
Alignment:
225 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaag 291  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||   ||||||||| | ||||||    
40902709 tgttagaaattaaataaagaaatatttagaagagtatagaagcttgacattactctttattattaag 40902775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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