View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14417_low_1 (Length: 675)
Name: NF14417_low_1
Description: NF14417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14417_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 207 - 659
Target Start/End: Original strand, 2646239 - 2646691
Alignment:
| Q |
207 |
tgacaagagtaacattgttgaataatagaaaattttggaagattagatgtgagtgaaagaaaaatgagggggaatattagaaatgaacacacaaagacta |
306 |
Q |
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| T |
2646239 |
tgacaagattaacattgttgaataatagaaaattttggaagattagatgtgagtgaaagaaaaatgagggggaatattagaaatgaacacacaaagacta |
2646338 |
T |
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| Q |
307 |
acctcaagataataaagtaacttgaactattatagatagagaagctgaaagagggagagattgatgaagaaatgtgacaataggcatggtttatatacta |
406 |
Q |
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| T |
2646339 |
acctcaagataataaagtaacttgaactattatagatagagaagctgaaagagggagagattgatgaagaaatgtgacaataggcatggtttatatacta |
2646438 |
T |
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| Q |
407 |
gaagacaccacataaaaaagaggataaatggagggaaaagagaatattgtagtactttttagtgctgtttaagtgacaaccttgataaatggaatcaata |
506 |
Q |
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| T |
2646439 |
gaagacaccacataaaaaagaggataaatggagggaaaagagaatattgtagtactttttagtgttgtttaagtgacaaccttgataaatggaatcaata |
2646538 |
T |
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| Q |
507 |
aaatttaaaggagagaaaaagagataaaggaaattcgtgcttcaattccaaagagaggttactttgaattttgaacatttactttggcagtgggctacaa |
606 |
Q |
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| T |
2646539 |
aaatttaaaggagagaaaaagagataaaggaaattcgtgcttcaattccaaagagaggttactttgaattttgaacatttactttggcagtgggctacaa |
2646638 |
T |
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| Q |
607 |
cttcattttgttaaaatttattggtatgataatggatgcaaagtgcatatagg |
659 |
Q |
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| T |
2646639 |
cttcattttgttaaaatttattggtatgataatggacgcaaagtgcatatagg |
2646691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 2645986 - 2646187
Alignment:
| Q |
14 |
attattctaatgcacaa---tttgtgaatgatagtaggtagtaactagatttctagctagtagtcttcttattataagatatgaacaaatataaaaaata |
110 |
Q |
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| T |
2645986 |
attattctaatgcgcaagagtttgtgaatgatagtaggtagtaactagatttctagctagaagtcttcttattataagatatgaacaaatataaaaaata |
2646085 |
T |
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| Q |
111 |
attgaagttatggattaacttctatgaaaactacaaagcaagttgtgaggttgacattatagagcactctagtagataacatgattgaagattatgtgac |
210 |
Q |
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| T |
2646086 |
attgaagttacggattaacttctttgagaactacaaagcaagttgtgaggttgacattatagagcactctagtagataacatgattgaagattatgtgac |
2646185 |
T |
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| Q |
211 |
aa |
212 |
Q |
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|| |
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| T |
2646186 |
aa |
2646187 |
T |
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