View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14417_low_13 (Length: 251)
Name: NF14417_low_13
Description: NF14417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14417_low_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 4655964 - 4656202
Alignment:
| Q |
15 |
aggaaaccaaatatgactaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagccttttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4655964 |
aggaaaccaaatatgactaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagccttttt |
4656063 |
T |
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| Q |
115 |
ctcgttgcattcaagttttcaaattgccctcatacataatcttttgaccattctcaataacattcttttattct--tatttttacatttcagctaataat |
212 |
Q |
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||| |||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
4656064 |
ctcattgcattcaagttttcaaattgacctcatacataatattttgaccattttcaataacattcttttattcttgtattcttacatttcagctcataat |
4656163 |
T |
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| Q |
213 |
cgtaccgatacctccgattgctcaagtaatgattgttcc |
251 |
Q |
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| T |
4656164 |
tgtaccgatatatccgattgctcaagtaatcattgttcc |
4656202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 4647519 - 4647756
Alignment:
| Q |
15 |
aggaaaccaaatatgactaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagccttttt |
114 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4647519 |
aggaaaccaaatatgaccaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagacttttt |
4647618 |
T |
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| Q |
115 |
-ctcgttgcattcaagttttcaaattgccctcatacataatcttttgaccattctcaataacattcttttattcttatttttacatttcagctaataatc |
213 |
Q |
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| T |
4647619 |
tctcaccgtattcaagttttcaaattgacctcatacataatcttctgaccattttcaataacattcttttattcttatttttacatttcagctaataatt |
4647718 |
T |
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| Q |
214 |
gtaccgatacctccgattgctcaagtaatgattgttcc |
251 |
Q |
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| T |
4647719 |
gtaccgatacctccgattgctcaagtaatcattgttcc |
4647756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 31038188 - 31038244
Alignment:
| Q |
24 |
aatatgactaagttttttaagtttgtttatactatgttcattttaatttctctattt |
80 |
Q |
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| T |
31038188 |
aatatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattt |
31038244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 23233451 - 23233497
Alignment:
| Q |
42 |
aagtttgtttatactatgttcattttaatttctctatttcttgttgt |
88 |
Q |
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| T |
23233451 |
aagtttttttatactatgatcattttagtttccctatttcttgttgt |
23233497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 22815825 - 22815879
Alignment:
| Q |
42 |
aagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatg |
96 |
Q |
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| T |
22815825 |
aagtttgtttatattatactcctttttatttctctatttcttgttgttatcaatg |
22815879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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